BioC 3.3: CHECK report for genbankr on moscato2

Package: genbankr

Version: 1.0.4

Command: rm -rf genbankr.buildbin-libdir genbankr.Rcheck && mkdir genbankr.buildbin-libdir genbankr.Rcheck && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=genbankr.buildbin-libdir genbankr_1.0.4.tar.gz >genbankr.Rcheck\00install.out 2>&1 && cp genbankr.Rcheck\00install.out genbankr-install.out && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=genbankr.buildbin-libdir --install="check:genbankr-install.out" --force-multiarch --no-vignettes --timings genbankr_1.0.4.tar.gz

StartedAt: 2016-10-13 04:01:08 -0700 (Thu, 13 Oct 2016)

EndedAt: 2016-10-13 04:07:35 -0700 (Thu, 13 Oct 2016)

EllapsedTime: 387.3 seconds

RetCode: 0

Status:  OK

CheckDir: genbankr.Rcheck

Warnings: 0

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf genbankr.buildbin-libdir genbankr.Rcheck && mkdir genbankr.buildbin-libdir genbankr.Rcheck && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=genbankr.buildbin-libdir genbankr_1.0.4.tar.gz >genbankr.Rcheck\00install.out 2>&1 && cp genbankr.Rcheck\00install.out genbankr-install.out  && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=genbankr.buildbin-libdir --install="check:genbankr-install.out" --force-multiarch --no-vignettes --timings genbankr_1.0.4.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'E:/biocbld/bbs-3.3-bioc/meat/genbankr.Rcheck'
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'genbankr/DESCRIPTION' ... OK
* this is package 'genbankr' version '1.0.4'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'genbankr' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'runTests.R'
 OK
** running tests for arch 'x64' ...
  Running 'runTests.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

install for i386

* installing *source* package 'genbankr' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'genbankr' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'genbankr' as genbankr_1.0.4.zip
* DONE (genbankr)

name	user	system	elapsed
GBAccession	0.01	0.00	0.01
GenBank-classes	2.39	0.00	2.39
api-methods	1.82	0.02	1.84
gbk-api	1.89	0.00	1.89
gbkfile	1.79	0.03	1.82
intergenic	1.83	0.00	1.83
make_gbobjs	1.7	0.0	1.7
otherFeatures	1.79	0.01	1.81
parseGenBank	1.14	0.02	1.15
readGenBank	1.72	0.00	1.72
txdb	0.97	0.19	1.22
variants	1.96	0.00	1.96

name	user	system	elapsed
GBAccession	0	0	0
GenBank-classes	2.48	0.01	2.50
api-methods	2.50	0.00	2.49
gbk-api	1.79	0.02	1.81
gbkfile	3.14	0.02	3.15
intergenic	1.95	0.00	1.95
make_gbobjs	2.30	0.00	2.31
otherFeatures	2	0	2
parseGenBank	1.45	0.00	1.45
readGenBank	2.29	0.01	2.31
txdb	1.01	0.33	1.34
variants	2.67	0.00	2.67