Back to the "Multiple platform build/check report" A  B  C  D  E [F] G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

BioC 3.3: CHECK report for frma on moscato2

This page was generated on 2016-10-13 12:49:14 -0700 (Thu, 13 Oct 2016).

Package 421/1210HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
frma 1.24.0
Matthew N. McCall
Snapshot Date: 2016-10-12 17:20:15 -0700 (Wed, 12 Oct 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_3/madman/Rpacks/frma
Last Changed Rev: 117079 / Revision: 122332
Last Changed Date: 2016-05-03 14:20:18 -0700 (Tue, 03 May 2016)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK [ OK ] OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: frma
Version: 1.24.0
Command: rm -rf frma.buildbin-libdir frma.Rcheck && mkdir frma.buildbin-libdir frma.Rcheck && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=frma.buildbin-libdir frma_1.24.0.tar.gz >frma.Rcheck\00install.out 2>&1 && cp frma.Rcheck\00install.out frma-install.out && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=frma.buildbin-libdir --install="check:frma-install.out" --force-multiarch --no-vignettes --timings frma_1.24.0.tar.gz
StartedAt: 2016-10-13 03:56:04 -0700 (Thu, 13 Oct 2016)
EndedAt: 2016-10-13 04:01:35 -0700 (Thu, 13 Oct 2016)
EllapsedTime: 331.3 seconds
RetCode: 0
Status:  OK  
CheckDir: frma.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf frma.buildbin-libdir frma.Rcheck && mkdir frma.buildbin-libdir frma.Rcheck && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=frma.buildbin-libdir frma_1.24.0.tar.gz >frma.Rcheck\00install.out 2>&1 && cp frma.Rcheck\00install.out frma-install.out  && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=frma.buildbin-libdir --install="check:frma-install.out" --force-multiarch --no-vignettes --timings frma_1.24.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'E:/biocbld/bbs-3.3-bioc/meat/frma.Rcheck'
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'frma/DESCRIPTION' ... OK
* this is package 'frma' version '1.24.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'frma' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Package listed in more than one of Depends, Imports, Suggests, Enhances:
  'Biobase'
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
GNUSE: no visible binding for global variable 'median'
GNUSE: no visible binding for global variable 'quantile'
GNUSE: no visible global function definition for 'boxplot'
barcode: no visible global function definition for 'pnorm'
batchFit: no visible global function definition for 'median'
Undefined global functions or variables:
  boxplot median pnorm quantile
Consider adding
  importFrom("graphics", "boxplot")
  importFrom("stats", "median", "pnorm", "quantile")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
         user system elapsed
GNUSE   17.94   0.12   21.12
barcode 13.96   0.08   14.15
frma    12.64   0.09   12.73
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
         user system elapsed
GNUSE   19.98   0.10   20.07
barcode 15.62   0.31   15.93
frma    15.13   0.03   15.26
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'E:/biocbld/bbs-3.3-bioc/meat/frma.Rcheck/00check.log'
for details.


frma.Rcheck/00install.out:


install for i386

* installing *source* package 'frma' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'frma' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'frma' as frma_1.24.0.zip
* DONE (frma)

frma.Rcheck/examples_i386/frma-Ex.timings:

nameusersystemelapsed
GNUSE17.94 0.1221.12
barcode13.96 0.0814.15
frma12.64 0.0912.73
frmaExpressionSet-class0.190.000.18

frma.Rcheck/examples_x64/frma-Ex.timings:

nameusersystemelapsed
GNUSE19.98 0.1020.07
barcode15.62 0.3115.93
frma15.13 0.0315.26
frmaExpressionSet-class0.20.00.2