BioC 3.3: INSTALL report for flowWorkspace on zin2

Package: flowWorkspace

Version: 3.18.11

Command: /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD INSTALL flowWorkspace

StartedAt: 2016-10-12 18:13:07 -0700 (Wed, 12 Oct 2016)

EndedAt: 2016-10-12 18:17:50 -0700 (Wed, 12 Oct 2016)

EllapsedTime: 283.1 seconds

RetCode: 0

Status:  OK

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###
### Running command:
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###   /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD INSTALL flowWorkspace
###
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* installing to library ‘/home/biocbuild/bbs-3.3-bioc/R/library’
* installing *source* package ‘flowWorkspace’ ...
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether g++ -std=c++11 accepts -g... yes
checking for gcc... gcc -std=gnu99
checking whether we are using the GNU C compiler... yes
checking whether gcc -std=gnu99 accepts -g... yes
checking for gcc -std=gnu99 option to accept ISO C89... none needed
configure: setting xml2 flags...
configure: No directory was specified for --with-xml2. Trying to find xml2 using other methods.
checking for xml2-config... /usr/bin/xml2-config
configure: setting protobuf flags...
configure: No directory was specified for --with-protobuf. Using bundled protocol buffer.
untarring protobuf ...
libtoolize: putting auxiliary files in `.'.
libtoolize: copying file `./ltmain.sh'
libtoolize: putting macros in AC_CONFIG_MACRO_DIR, `m4'.
libtoolize: copying file `m4/libtool.m4'
libtoolize: copying file `m4/ltoptions.m4'
libtoolize: copying file `m4/ltsugar.m4'
libtoolize: copying file `m4/ltversion.m4'
libtoolize: copying file `m4/lt˜obsolete.m4'
configure.ac:45: installing './compile'
/usr/share/automake-1.14/am/ltlibrary.am: warning: 'libprotobuf.la': linking libtool libraries using a non-POSIX
/usr/share/automake-1.14/am/ltlibrary.am: archiver requires 'AM_PROG_AR' in 'configure.ac'
src/Makefile.am:81:   while processing Libtool library 'libprotobuf.la'
building protobuf...
checking whether to enable maintainer-specific portions of Makefiles... yes
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking target system type... x86_64-unknown-linux-gnu
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking for gcc... gcc -std=gnu99
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -std=gnu99 accepts -g... yes
checking for gcc -std=gnu99 option to accept ISO C89... none needed
checking whether gcc -std=gnu99 understands -c and -o together... yes
checking for style of include used by make... GNU
checking dependency style of gcc -std=gnu99... gcc3
checking whether we are using the GNU C++ compiler... yes
checking whether g++ -std=c++11 accepts -g... yes
checking dependency style of g++ -std=c++11... gcc3
checking how to run the C++ preprocessor... g++ -std=c++11 -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking minix/config.h usability... no
checking minix/config.h presence... no
checking for minix/config.h... no
checking whether it is safe to define __EXTENSIONS__... yes
checking C++ compiler flags...... use user-supplied: -g -O2
checking whether __SUNPRO_CC is declared... no
checking how to print strings... printf
checking for a sed that does not truncate output... /bin/sed
checking for fgrep... /bin/grep -F
checking for ld used by gcc -std=gnu99... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc -std=gnu99 object... ok
checking for sysroot... no
checking for mt... mt
checking if mt is a manifest tool... no
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc -std=gnu99 supports -fno-rtti -fno-exceptions... no
checking for gcc -std=gnu99 option to produce PIC... -fPIC -DPIC
checking if gcc -std=gnu99 PIC flag -fPIC -DPIC works... yes
checking if gcc -std=gnu99 static flag -static works... yes
checking if gcc -std=gnu99 supports -c -o file.o... yes
checking if gcc -std=gnu99 supports -c -o file.o... (cached) yes
checking whether the gcc -std=gnu99 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking how to run the C++ preprocessor... g++ -std=c++11 -E
checking for ld used by g++ -std=c++11... /usr/bin/ld -m elf_x86_64
checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the g++ -std=c++11 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking for g++ -std=c++11 option to produce PIC... -fPIC -DPIC
checking if g++ -std=c++11 PIC flag -fPIC -DPIC works... yes
checking if g++ -std=c++11 static flag -static works... yes
checking if g++ -std=c++11 supports -c -o file.o... yes
checking if g++ -std=c++11 supports -c -o file.o... (cached) yes
checking whether the g++ -std=c++11 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for ANSI C header files... (cached) yes
checking fcntl.h usability... yes
checking fcntl.h presence... yes
checking for fcntl.h... yes
checking for inttypes.h... (cached) yes
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
checking for stdlib.h... (cached) yes
checking for unistd.h... (cached) yes
checking for working memcmp... yes
checking for working strtod... yes
checking for ftruncate... yes
checking for memset... yes
checking for mkdir... yes
checking for strchr... yes
checking for strerror... yes
checking for strtol... yes
checking zlib version... ok (1.2.0.4 or later)
checking for library containing zlibVersion... -lz
checking for the pthreads library -lpthreads... no
checking whether pthreads work without any flags... no
checking whether pthreads work with -Kthread... no
checking whether pthreads work with -kthread... no
checking for the pthreads library -llthread... no
checking whether pthreads work with -pthread... yes
checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE
checking if more special flags are required for pthreads... no
checking whether to check for GCC pthread/shared inconsistencies... yes
checking whether -pthread is sufficient with -shared... yes
checking whether what we have so far is sufficient with -nostdlib... no
checking whether -lpthread saves the day... yes
checking the location of hash_map... <unordered_map>
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating protobuf.pc
config.status: creating protobuf-lite.pc
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands
CDPATH="${ZSH_VERSION+.}:" && cd ../protobuf-2.6.0 && /bin/bash /home/biocbuild/bbs-3.3-bioc/meat/flowWorkspace/src/protobuf-2.6.0/missing aclocal-1.14 -I m4
 cd ../protobuf-2.6.0 && /bin/bash /home/biocbuild/bbs-3.3-bioc/meat/flowWorkspace/src/protobuf-2.6.0/missing automake-1.14 --foreign
CDPATH="${ZSH_VERSION+.}:" && cd ../protobuf-2.6.0 && /bin/bash /home/biocbuild/bbs-3.3-bioc/meat/flowWorkspace/src/protobuf-2.6.0/missing autoconf
/bin/bash ./config.status --recheck
running CONFIG_SHELL=/bin/bash /bin/bash ../protobuf-2.6.0/configure --enable-static=no CXX=g++ -std=c++11 CXXFLAGS=-g -O2 CC=gcc -std=gnu99 CFLAGS=-g -O2 -Wall --no-create --no-recursion
checking whether to enable maintainer-specific portions of Makefiles... yes
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking target system type... x86_64-unknown-linux-gnu
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking for gcc... gcc -std=gnu99
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -std=gnu99 accepts -g... yes
checking for gcc -std=gnu99 option to accept ISO C89... none needed
checking whether gcc -std=gnu99 understands -c and -o together... yes
checking for style of include used by make... GNU
checking dependency style of gcc -std=gnu99... gcc3
checking whether we are using the GNU C++ compiler... yes
checking whether g++ -std=c++11 accepts -g... yes
checking dependency style of g++ -std=c++11... gcc3
checking how to run the C++ preprocessor... g++ -std=c++11 -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking minix/config.h usability... no
checking minix/config.h presence... no
checking for minix/config.h... no
checking whether it is safe to define __EXTENSIONS__... yes
checking C++ compiler flags...... use user-supplied: -g -O2
checking whether __SUNPRO_CC is declared... no
checking how to print strings... printf
checking for a sed that does not truncate output... /bin/sed
checking for fgrep... /bin/grep -F
checking for ld used by gcc -std=gnu99... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 3458764513820540925
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc -std=gnu99 object... ok
checking for sysroot... no
checking for mt... mt
checking if mt is a manifest tool... no
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc -std=gnu99 supports -fno-rtti -fno-exceptions... no
checking for gcc -std=gnu99 option to produce PIC... -fPIC -DPIC
checking if gcc -std=gnu99 PIC flag -fPIC -DPIC works... yes
checking if gcc -std=gnu99 static flag -static works... yes
checking if gcc -std=gnu99 supports -c -o file.o... yes
checking if gcc -std=gnu99 supports -c -o file.o... (cached) yes
checking whether the gcc -std=gnu99 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking how to run the C++ preprocessor... g++ -std=c++11 -E
checking for ld used by g++ -std=c++11... /usr/bin/ld -m elf_x86_64
checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the g++ -std=c++11 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking for g++ -std=c++11 option to produce PIC... -fPIC -DPIC
checking if g++ -std=c++11 PIC flag -fPIC -DPIC works... yes
checking if g++ -std=c++11 static flag -static works... yes
checking if g++ -std=c++11 supports -c -o file.o... yes
checking if g++ -std=c++11 supports -c -o file.o... (cached) yes
checking whether the g++ -std=c++11 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for ANSI C header files... (cached) yes
checking fcntl.h usability... yes
checking fcntl.h presence... yes
checking for fcntl.h... yes
checking for inttypes.h... (cached) yes
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
checking for stdlib.h... (cached) yes
checking for unistd.h... (cached) yes
checking for working memcmp... yes
checking for working strtod... yes
checking for ftruncate... yes
checking for memset... yes
checking for mkdir... yes
checking for strchr... yes
checking for strerror... yes
checking for strtol... yes
checking zlib version... ok (1.2.0.4 or later)
checking for library containing zlibVersion... -lz
checking for the pthreads library -lpthreads... no
checking whether pthreads work without any flags... no
checking whether pthreads work with -Kthread... no
checking whether pthreads work with -kthread... no
checking for the pthreads library -llthread... no
checking whether pthreads work with -pthread... yes
checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE
checking if more special flags are required for pthreads... no
checking whether to check for GCC pthread/shared inconsistencies... yes
checking whether -pthread is sufficient with -shared... yes
checking whether what we have so far is sufficient with -nostdlib... no
checking whether -lpthread saves the day... yes
checking the location of hash_map... <unordered_map>
checking that generated files are newer than configure... done
configure: creating ./config.status
 /bin/bash ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating protobuf.pc
config.status: creating protobuf-lite.pc
config.status: creating config.h
config.status: config.h is unchanged
config.status: executing depfiles commands
config.status: executing libtool commands
(CDPATH="${ZSH_VERSION+.}:" && cd ../protobuf-2.6.0 && /bin/bash /home/biocbuild/bbs-3.3-bioc/meat/flowWorkspace/src/protobuf-2.6.0/missing autoheader)
rm -f stamp-h1
touch ../protobuf-2.6.0/config.h.in
cd . && /bin/bash ./config.status config.h
config.status: creating config.h
config.status: config.h is unchanged
make  all-recursive
make[1]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/flowWorkspace/src/pb_build'
Making all in .
make[2]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/flowWorkspace/src/pb_build'
make[2]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/flowWorkspace/src/pb_build'
Making all in src
make[2]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/flowWorkspace/src/pb_build/src'
depbase=`echo google/protobuf/stubs/atomicops_internals_x86_gcc.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
	/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I..    -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type  -g -O2 -MT google/protobuf/stubs/atomicops_internals_x86_gcc.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/stubs/atomicops_internals_x86_gcc.lo ../../protobuf-2.6.0/src/google/protobuf/stubs/atomicops_internals_x86_gcc.cc &&\
	mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -MT google/protobuf/stubs/atomicops_internals_x86_gcc.lo -MD -MP -MF google/protobuf/stubs/.deps/atomicops_internals_x86_gcc.Tpo -c ../../protobuf-2.6.0/src/google/protobuf/stubs/atomicops_internals_x86_gcc.cc  -fPIC -DPIC -o google/protobuf/stubs/.libs/atomicops_internals_x86_gcc.o
depbase=`echo google/protobuf/stubs/atomicops_internals_x86_msvc.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
	/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I..    -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type  -g -O2 -MT google/protobuf/stubs/atomicops_internals_x86_msvc.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/stubs/atomicops_internals_x86_msvc.lo ../../protobuf-2.6.0/src/google/protobuf/stubs/atomicops_internals_x86_msvc.cc &&\
	mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -MT google/protobuf/stubs/atomicops_internals_x86_msvc.lo -MD -MP -MF google/protobuf/stubs/.deps/atomicops_internals_x86_msvc.Tpo -c ../../protobuf-2.6.0/src/google/protobuf/stubs/atomicops_internals_x86_msvc.cc  -fPIC -DPIC -o google/protobuf/stubs/.libs/atomicops_internals_x86_msvc.o
depbase=`echo google/protobuf/stubs/common.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
	/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I..    -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type  -g -O2 -MT google/protobuf/stubs/common.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/stubs/common.lo ../../protobuf-2.6.0/src/google/protobuf/stubs/common.cc &&\
	mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -MT google/protobuf/stubs/common.lo -MD -MP -MF google/protobuf/stubs/.deps/common.Tpo -c ../../protobuf-2.6.0/src/google/protobuf/stubs/common.cc  -fPIC -DPIC -o google/protobuf/stubs/.libs/common.o
depbase=`echo google/protobuf/stubs/once.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
	/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I..    -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type  -g -O2 -MT google/protobuf/stubs/once.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/stubs/once.lo ../../protobuf-2.6.0/src/google/protobuf/stubs/once.cc &&\
	mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -MT google/protobuf/stubs/once.lo -MD -MP -MF google/protobuf/stubs/.deps/once.Tpo -c ../../protobuf-2.6.0/src/google/protobuf/stubs/once.cc  -fPIC -DPIC -o google/protobuf/stubs/.libs/once.o
depbase=`echo google/protobuf/stubs/stringprintf.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
	/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I..    -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type  -g -O2 -MT google/protobuf/stubs/stringprintf.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/stubs/stringprintf.lo ../../protobuf-2.6.0/src/google/protobuf/stubs/stringprintf.cc &&\
	mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -MT google/protobuf/stubs/stringprintf.lo -MD -MP -MF google/protobuf/stubs/.deps/stringprintf.Tpo -c ../../protobuf-2.6.0/src/google/protobuf/stubs/stringprintf.cc  -fPIC -DPIC -o google/protobuf/stubs/.libs/stringprintf.o
In file included from ../../protobuf-2.6.0/src/google/protobuf/stubs/stringprintf.h:47:0,
                 from ../../protobuf-2.6.0/src/google/protobuf/stubs/stringprintf.cc:33:
../../protobuf-2.6.0/src/google/protobuf/stubs/stringprintf.cc: In function 'std::string google::protobuf::StringPrintfVector(const char*, const std::vector<std::basic_string<char> >&)':
../../protobuf-2.6.0/src/google/protobuf/stubs/stringprintf.cc:164:59: warning: typedef 'arg_count_mismatch' locally defined but not used [-Wunused-local-typedefs]
   GOOGLE_COMPILE_ASSERT(kStringPrintfVectorMaxArgs == 32, arg_count_mismatch);
                                                           ^
../../protobuf-2.6.0/src/google/protobuf/stubs/common.h:382:11: note: in definition of macro 'GOOGLE_COMPILE_ASSERT'
           msg[bool(expr) ? 1 : -1]
           ^
depbase=`echo google/protobuf/extension_set.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
	/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I..    -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type  -g -O2 -MT google/protobuf/extension_set.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/extension_set.lo ../../protobuf-2.6.0/src/google/protobuf/extension_set.cc &&\
	mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -MT google/protobuf/extension_set.lo -MD -MP -MF google/protobuf/.deps/extension_set.Tpo -c ../../protobuf-2.6.0/src/google/protobuf/extension_set.cc  -fPIC -DPIC -o google/protobuf/.libs/extension_set.o
In file included from ../../protobuf-2.6.0/src/google/protobuf/extension_set.cc:43:0:
../../protobuf-2.6.0/src/google/protobuf/stubs/map_util.h: In function 'void google::protobuf::InsertOrDie(Collection*, const typename Collection::value_type::first_type&, const typename Collection::value_type::second_type&)':
../../protobuf-2.6.0/src/google/protobuf/stubs/map_util.h:356:43: warning: typedef 'value_type' locally defined but not used [-Wunused-local-typedefs]
   typedef typename Collection::value_type value_type;
                                           ^
../../protobuf-2.6.0/src/google/protobuf/stubs/map_util.h: In function 'void google::protobuf::InsertOrDieNoPrint(Collection*, const typename Collection::value_type::first_type&, const typename Collection::value_type::second_type&)':
../../protobuf-2.6.0/src/google/protobuf/stubs/map_util.h:367:43: warning: typedef 'value_type' locally defined but not used [-Wunused-local-typedefs]
   typedef typename Collection::value_type value_type;
                                           ^
depbase=`echo google/protobuf/generated_message_util.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
	/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I..    -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type  -g -O2 -MT google/protobuf/generated_message_util.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/generated_message_util.lo ../../protobuf-2.6.0/src/google/protobuf/generated_message_util.cc &&\
	mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -MT google/protobuf/generated_message_util.lo -MD -MP -MF google/protobuf/.deps/generated_message_util.Tpo -c ../../protobuf-2.6.0/src/google/protobuf/generated_message_util.cc  -fPIC -DPIC -o google/protobuf/.libs/generated_message_util.o
depbase=`echo google/protobuf/message_lite.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
	/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I..    -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type  -g -O2 -MT google/protobuf/message_lite.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/message_lite.lo ../../protobuf-2.6.0/src/google/protobuf/message_lite.cc &&\
	mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -MT google/protobuf/message_lite.lo -MD -MP -MF google/protobuf/.deps/message_lite.Tpo -c ../../protobuf-2.6.0/src/google/protobuf/message_lite.cc  -fPIC -DPIC -o google/protobuf/.libs/message_lite.o
depbase=`echo google/protobuf/repeated_field.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
	/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I..    -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type  -g -O2 -MT google/protobuf/repeated_field.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/repeated_field.lo ../../protobuf-2.6.0/src/google/protobuf/repeated_field.cc &&\
	mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -MT google/protobuf/repeated_field.lo -MD -MP -MF google/protobuf/.deps/repeated_field.Tpo -c ../../protobuf-2.6.0/src/google/protobuf/repeated_field.cc  -fPIC -DPIC -o google/protobuf/.libs/repeated_field.o
depbase=`echo google/protobuf/wire_format_lite.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
	/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I..    -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type  -g -O2 -MT google/protobuf/wire_format_lite.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/wire_format_lite.lo ../../protobuf-2.6.0/src/google/protobuf/wire_format_lite.cc &&\
	mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -MT google/protobuf/wire_format_lite.lo -MD -MP -MF google/protobuf/.deps/wire_format_lite.Tpo -c ../../protobuf-2.6.0/src/google/protobuf/wire_format_lite.cc  -fPIC -DPIC -o google/protobuf/.libs/wire_format_lite.o
depbase=`echo google/protobuf/io/coded_stream.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
	/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I..    -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type  -g -O2 -MT google/protobuf/io/coded_stream.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/io/coded_stream.lo ../../protobuf-2.6.0/src/google/protobuf/io/coded_stream.cc &&\
	mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -MT google/protobuf/io/coded_stream.lo -MD -MP -MF google/protobuf/io/.deps/coded_stream.Tpo -c ../../protobuf-2.6.0/src/google/protobuf/io/coded_stream.cc  -fPIC -DPIC -o google/protobuf/io/.libs/coded_stream.o
depbase=`echo google/protobuf/io/zero_copy_stream.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
	/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I..    -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type  -g -O2 -MT google/protobuf/io/zero_copy_stream.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/io/zero_copy_stream.lo ../../protobuf-2.6.0/src/google/protobuf/io/zero_copy_stream.cc &&\
	mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -MT google/protobuf/io/zero_copy_stream.lo -MD -MP -MF google/protobuf/io/.deps/zero_copy_stream.Tpo -c ../../protobuf-2.6.0/src/google/protobuf/io/zero_copy_stream.cc  -fPIC -DPIC -o google/protobuf/io/.libs/zero_copy_stream.o
depbase=`echo google/protobuf/io/zero_copy_stream_impl_lite.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
	/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I..    -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type  -g -O2 -MT google/protobuf/io/zero_copy_stream_impl_lite.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/io/zero_copy_stream_impl_lite.lo ../../protobuf-2.6.0/src/google/protobuf/io/zero_copy_stream_impl_lite.cc &&\
	mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -MT google/protobuf/io/zero_copy_stream_impl_lite.lo -MD -MP -MF google/protobuf/io/.deps/zero_copy_stream_impl_lite.Tpo -c ../../protobuf-2.6.0/src/google/protobuf/io/zero_copy_stream_impl_lite.cc  -fPIC -DPIC -o google/protobuf/io/.libs/zero_copy_stream_impl_lite.o
depbase=`echo google/protobuf/stubs/strutil.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
	/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I..    -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type  -g -O2 -MT google/protobuf/stubs/strutil.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/stubs/strutil.lo ../../protobuf-2.6.0/src/google/protobuf/stubs/strutil.cc &&\
	mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -MT google/protobuf/stubs/strutil.lo -MD -MP -MF google/protobuf/stubs/.deps/strutil.Tpo -c ../../protobuf-2.6.0/src/google/protobuf/stubs/strutil.cc  -fPIC -DPIC -o google/protobuf/stubs/.libs/strutil.o
In file included from ../../protobuf-2.6.0/src/google/protobuf/stubs/strutil.h:38:0,
                 from ../../protobuf-2.6.0/src/google/protobuf/stubs/strutil.cc:33:
../../protobuf-2.6.0/src/google/protobuf/stubs/strutil.h: In function 'google::protobuf::int64 google::protobuf::strto64(const char*, char**, int)':
../../protobuf-2.6.0/src/google/protobuf/stubs/strutil.h:341:25: warning: typedef 'sizeof_int64_is_not_sizeof_long_long' locally defined but not used [-Wunused-local-typedefs]
                         sizeof_int64_is_not_sizeof_long_long);
                         ^
../../protobuf-2.6.0/src/google/protobuf/stubs/common.h:382:11: note: in definition of macro 'GOOGLE_COMPILE_ASSERT'
           msg[bool(expr) ? 1 : -1]
           ^
../../protobuf-2.6.0/src/google/protobuf/stubs/strutil.h: In function 'google::protobuf::uint64 google::protobuf::strtou64(const char*, char**, int)':
../../protobuf-2.6.0/src/google/protobuf/stubs/strutil.h:347:25: warning: typedef 'sizeof_uint64_is_not_sizeof_long_long' locally defined but not used [-Wunused-local-typedefs]
                         sizeof_uint64_is_not_sizeof_long_long);
                         ^
../../protobuf-2.6.0/src/google/protobuf/stubs/common.h:382:11: note: in definition of macro 'GOOGLE_COMPILE_ASSERT'
           msg[bool(expr) ? 1 : -1]
           ^
../../protobuf-2.6.0/src/google/protobuf/stubs/strutil.cc: In function 'char* google::protobuf::DoubleToBuffer(double, char*)':
../../protobuf-2.6.0/src/google/protobuf/stubs/strutil.cc:1172:39: warning: typedef 'DBL_DIG_is_too_big' locally defined but not used [-Wunused-local-typedefs]
   GOOGLE_COMPILE_ASSERT(DBL_DIG < 20, DBL_DIG_is_too_big);
                                       ^
../../protobuf-2.6.0/src/google/protobuf/stubs/common.h:382:11: note: in definition of macro 'GOOGLE_COMPILE_ASSERT'
           msg[bool(expr) ? 1 : -1]
           ^
../../protobuf-2.6.0/src/google/protobuf/stubs/strutil.cc: In function 'char* google::protobuf::FloatToBuffer(float, char*)':
../../protobuf-2.6.0/src/google/protobuf/stubs/strutil.cc:1227:39: warning: typedef 'FLT_DIG_is_too_big' locally defined but not used [-Wunused-local-typedefs]
   GOOGLE_COMPILE_ASSERT(FLT_DIG < 10, FLT_DIG_is_too_big);
                                       ^
../../protobuf-2.6.0/src/google/protobuf/stubs/common.h:382:11: note: in definition of macro 'GOOGLE_COMPILE_ASSERT'
           msg[bool(expr) ? 1 : -1]
           ^
depbase=`echo google/protobuf/stubs/substitute.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
	/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I..    -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type  -g -O2 -MT google/protobuf/stubs/substitute.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/stubs/substitute.lo ../../protobuf-2.6.0/src/google/protobuf/stubs/substitute.cc &&\
	mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -MT google/protobuf/stubs/substitute.lo -MD -MP -MF google/protobuf/stubs/.deps/substitute.Tpo -c ../../protobuf-2.6.0/src/google/protobuf/stubs/substitute.cc  -fPIC -DPIC -o google/protobuf/stubs/.libs/substitute.o
In file included from ../../protobuf-2.6.0/src/google/protobuf/stubs/substitute.h:35:0,
                 from ../../protobuf-2.6.0/src/google/protobuf/stubs/substitute.cc:33:
../../protobuf-2.6.0/src/google/protobuf/stubs/strutil.h: In function 'google::protobuf::int64 google::protobuf::strto64(const char*, char**, int)':
../../protobuf-2.6.0/src/google/protobuf/stubs/strutil.h:341:25: warning: typedef 'sizeof_int64_is_not_sizeof_long_long' locally defined but not used [-Wunused-local-typedefs]
                         sizeof_int64_is_not_sizeof_long_long);
                         ^
../../protobuf-2.6.0/src/google/protobuf/stubs/common.h:382:11: note: in definition of macro 'GOOGLE_COMPILE_ASSERT'
           msg[bool(expr) ? 1 : -1]
           ^
../../protobuf-2.6.0/src/google/protobuf/stubs/strutil.h: In function 'google::protobuf::uint64 google::protobuf::strtou64(const char*, char**, int)':
../../protobuf-2.6.0/src/google/protobuf/stubs/strutil.h:347:25: warning: typedef 'sizeof_uint64_is_not_sizeof_long_long' locally defined but not used [-Wunused-local-typedefs]
                         sizeof_uint64_is_not_sizeof_long_long);
                         ^
../../protobuf-2.6.0/src/google/protobuf/stubs/common.h:382:11: note: in definition of macro 'GOOGLE_COMPILE_ASSERT'
           msg[bool(expr) ? 1 : -1]
           ^
depbase=`echo google/protobuf/stubs/structurally_valid.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
	/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I..    -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type  -g -O2 -MT google/protobuf/stubs/structurally_valid.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/stubs/structurally_valid.lo ../../protobuf-2.6.0/src/google/protobuf/stubs/structurally_valid.cc &&\
	mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -MT google/protobuf/stubs/structurally_valid.lo -MD -MP -MF google/protobuf/stubs/.deps/structurally_valid.Tpo -c ../../protobuf-2.6.0/src/google/protobuf/stubs/structurally_valid.cc  -fPIC -DPIC -o google/protobuf/stubs/.libs/structurally_valid.o
depbase=`echo google/protobuf/descriptor.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
	/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I..    -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type  -g -O2 -MT google/protobuf/descriptor.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/descriptor.lo ../../protobuf-2.6.0/src/google/protobuf/descriptor.cc &&\
	mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -MT google/protobuf/descriptor.lo -MD -MP -MF google/protobuf/.deps/descriptor.Tpo -c ../../protobuf-2.6.0/src/google/protobuf/descriptor.cc  -fPIC -DPIC -o google/protobuf/.libs/descriptor.o
In file included from ../../protobuf-2.6.0/src/google/protobuf/stubs/hash.h:39:0,
                 from ../../protobuf-2.6.0/src/google/protobuf/descriptor.cc:35:
../../protobuf-2.6.0/src/google/protobuf/stubs/strutil.h: In function 'google::protobuf::int64 google::protobuf::strto64(const char*, char**, int)':
../../protobuf-2.6.0/src/google/protobuf/stubs/strutil.h:341:25: warning: typedef 'sizeof_int64_is_not_sizeof_long_long' locally defined but not used [-Wunused-local-typedefs]
                         sizeof_int64_is_not_sizeof_long_long);
                         ^
../../protobuf-2.6.0/src/google/protobuf/stubs/common.h:382:11: note: in definition of macro 'GOOGLE_COMPILE_ASSERT'
           msg[bool(expr) ? 1 : -1]
           ^
../../protobuf-2.6.0/src/google/protobuf/stubs/strutil.h: In function 'google::protobuf::uint64 google::protobuf::strtou64(const char*, char**, int)':
../../protobuf-2.6.0/src/google/protobuf/stubs/strutil.h:347:25: warning: typedef 'sizeof_uint64_is_not_sizeof_long_long' locally defined but not used [-Wunused-local-typedefs]
                         sizeof_uint64_is_not_sizeof_long_long);
                         ^
../../protobuf-2.6.0/src/google/protobuf/stubs/common.h:382:11: note: in definition of macro 'GOOGLE_COMPILE_ASSERT'
           msg[bool(expr) ? 1 : -1]
           ^
In file included from ../../protobuf-2.6.0/src/google/protobuf/descriptor.cc:59:0:
../../protobuf-2.6.0/src/google/protobuf/stubs/map_util.h: In function 'void google::protobuf::InsertOrDie(Collection*, const typename Collection::value_type::first_type&, const typename Collection::value_type::second_type&)':
../../protobuf-2.6.0/src/google/protobuf/stubs/map_util.h:356:43: warning: typedef 'value_type' locally defined but not used [-Wunused-local-typedefs]
   typedef typename Collection::value_type value_type;
                                           ^
../../protobuf-2.6.0/src/google/protobuf/stubs/map_util.h: In function 'void google::protobuf::InsertOrDieNoPrint(Collection*, const typename Collection::value_type::first_type&, const typename Collection::value_type::second_type&)':
../../protobuf-2.6.0/src/google/protobuf/stubs/map_util.h:367:43: warning: typedef 'value_type' locally defined but not used [-Wunused-local-typedefs]
   typedef typename Collection::value_type value_type;
                                           ^
depbase=`echo google/protobuf/descriptor.pb.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
	/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I..    -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type  -g -O2 -MT google/protobuf/descriptor.pb.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/descriptor.pb.lo ../../protobuf-2.6.0/src/google/protobuf/descriptor.pb.cc &&\
	mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -MT google/protobuf/descriptor.pb.lo -MD -MP -MF google/protobuf/.deps/descriptor.pb.Tpo -c ../../protobuf-2.6.0/src/google/protobuf/descriptor.pb.cc  -fPIC -DPIC -o google/protobuf/.libs/descriptor.pb.o
depbase=`echo google/protobuf/descriptor_database.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
	/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I..    -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type  -g -O2 -MT google/protobuf/descriptor_database.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/descriptor_database.lo ../../protobuf-2.6.0/src/google/protobuf/descriptor_database.cc &&\
	mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -MT google/protobuf/descriptor_database.lo -MD -MP -MF google/protobuf/.deps/descriptor_database.Tpo -c ../../protobuf-2.6.0/src/google/protobuf/descriptor_database.cc  -fPIC -DPIC -o google/protobuf/.libs/descriptor_database.o
In file included from ../../protobuf-2.6.0/src/google/protobuf/descriptor_database.h:44:0,
                 from ../../protobuf-2.6.0/src/google/protobuf/descriptor_database.cc:35:
../../protobuf-2.6.0/src/google/protobuf/stubs/strutil.h: In function 'google::protobuf::int64 google::protobuf::strto64(const char*, char**, int)':
../../protobuf-2.6.0/src/google/protobuf/stubs/strutil.h:341:25: warning: typedef 'sizeof_int64_is_not_sizeof_long_long' locally defined but not used [-Wunused-local-typedefs]
                         sizeof_int64_is_not_sizeof_long_long);
                         ^
../../protobuf-2.6.0/src/google/protobuf/stubs/common.h:382:11: note: in definition of macro 'GOOGLE_COMPILE_ASSERT'
           msg[bool(expr) ? 1 : -1]
           ^
../../protobuf-2.6.0/src/google/protobuf/stubs/strutil.h: In function 'google::protobuf::uint64 google::protobuf::strtou64(const char*, char**, int)':
../../protobuf-2.6.0/src/google/protobuf/stubs/strutil.h:347:25: warning: typedef 'sizeof_uint64_is_not_sizeof_long_long' locally defined but not used [-Wunused-local-typedefs]
                         sizeof_uint64_is_not_sizeof_long_long);
                         ^
../../protobuf-2.6.0/src/google/protobuf/stubs/common.h:382:11: note: in definition of macro 'GOOGLE_COMPILE_ASSERT'
           msg[bool(expr) ? 1 : -1]
           ^
In file included from ../../protobuf-2.6.0/src/google/protobuf/descriptor_database.cc:43:0:
../../protobuf-2.6.0/src/google/protobuf/stubs/map_util.h: In function 'void google::protobuf::InsertOrDie(Collection*, const typename Collection::value_type::first_type&, const typename Collection::value_type::second_type&)':
../../protobuf-2.6.0/src/google/protobuf/stubs/map_util.h:356:43: warning: typedef 'value_type' locally defined but not used [-Wunused-local-typedefs]
   typedef typename Collection::value_type value_type;
                                           ^
../../protobuf-2.6.0/src/google/protobuf/stubs/map_util.h: In function 'void google::protobuf::InsertOrDieNoPrint(Collection*, const typename Collection::value_type::first_type&, const typename Collection::value_type::second_type&)':
../../protobuf-2.6.0/src/google/protobuf/stubs/map_util.h:367:43: warning: typedef 'value_type' locally defined but not used [-Wunused-local-typedefs]
   typedef typename Collection::value_type value_type;
                                           ^
depbase=`echo google/protobuf/dynamic_message.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
	/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I..    -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type  -g -O2 -MT google/protobuf/dynamic_message.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/dynamic_message.lo ../../protobuf-2.6.0/src/google/protobuf/dynamic_message.cc &&\
	mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -MT google/protobuf/dynamic_message.lo -MD -MP -MF google/protobuf/.deps/dynamic_message.Tpo -c ../../protobuf-2.6.0/src/google/protobuf/dynamic_message.cc  -fPIC -DPIC -o google/protobuf/.libs/dynamic_message.o
depbase=`echo google/protobuf/extension_set_heavy.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
	/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I..    -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type  -g -O2 -MT google/protobuf/extension_set_heavy.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/extension_set_heavy.lo ../../protobuf-2.6.0/src/google/protobuf/extension_set_heavy.cc &&\
	mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -MT google/protobuf/extension_set_heavy.lo -MD -MP -MF google/protobuf/.deps/extension_set_heavy.Tpo -c ../../protobuf-2.6.0/src/google/protobuf/extension_set_heavy.cc  -fPIC -DPIC -o google/protobuf/.libs/extension_set_heavy.o
depbase=`echo google/protobuf/generated_message_reflection.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
	/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I..    -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type  -g -O2 -MT google/protobuf/generated_message_reflection.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/generated_message_reflection.lo ../../protobuf-2.6.0/src/google/protobuf/generated_message_reflection.cc &&\
	mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -MT google/protobuf/generated_message_reflection.lo -MD -MP -MF google/protobuf/.deps/generated_message_reflection.Tpo -c ../../protobuf-2.6.0/src/google/protobuf/generated_message_reflection.cc  -fPIC -DPIC -o google/protobuf/.libs/generated_message_reflection.o
../../protobuf-2.6.0/src/google/protobuf/generated_message_reflection.cc: In member function 'void google::protobuf::internal::GeneratedMessageReflection::SwapOneofField(google::protobuf::Message*, google::protobuf::Message*, const google::protobuf::OneofDescriptor*) const':
../../protobuf-2.6.0/src/google/protobuf/generated_message_reflection.cc:503:54: warning: 'field1' may be used uninitialized in this function [-Wmaybe-uninitialized]
         SetField<TYPE>(message2, field1, temp_##TYPE);                  \
                                                      ^
../../protobuf-2.6.0/src/google/protobuf/generated_message_reflection.cc:516:60: warning: 'temp_message' may be used uninitialized in this function [-Wmaybe-uninitialized]
         SetAllocatedMessage(message2, temp_message, field1);
                                                            ^
depbase=`echo google/protobuf/message.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
	/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I..    -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type  -g -O2 -MT google/protobuf/message.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/message.lo ../../protobuf-2.6.0/src/google/protobuf/message.cc &&\
	mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -MT google/protobuf/message.lo -MD -MP -MF google/protobuf/.deps/message.Tpo -c ../../protobuf-2.6.0/src/google/protobuf/message.cc  -fPIC -DPIC -o google/protobuf/.libs/message.o
In file included from ../../protobuf-2.6.0/src/google/protobuf/stubs/hash.h:39:0,
                 from ../../protobuf-2.6.0/src/google/protobuf/message.cc:37:
../../protobuf-2.6.0/src/google/protobuf/stubs/strutil.h: In function 'google::protobuf::int64 google::protobuf::strto64(const char*, char**, int)':
../../protobuf-2.6.0/src/google/protobuf/stubs/strutil.h:341:25: warning: typedef 'sizeof_int64_is_not_sizeof_long_long' locally defined but not used [-Wunused-local-typedefs]
                         sizeof_int64_is_not_sizeof_long_long);
                         ^
../../protobuf-2.6.0/src/google/protobuf/stubs/common.h:382:11: note: in definition of macro 'GOOGLE_COMPILE_ASSERT'
           msg[bool(expr) ? 1 : -1]
           ^
../../protobuf-2.6.0/src/google/protobuf/stubs/strutil.h: In function 'google::protobuf::uint64 google::protobuf::strtou64(const char*, char**, int)':
../../protobuf-2.6.0/src/google/protobuf/stubs/strutil.h:347:25: warning: typedef 'sizeof_uint64_is_not_sizeof_long_long' locally defined but not used [-Wunused-local-typedefs]
                         sizeof_uint64_is_not_sizeof_long_long);
                         ^
../../protobuf-2.6.0/src/google/protobuf/stubs/common.h:382:11: note: in definition of macro 'GOOGLE_COMPILE_ASSERT'
           msg[bool(expr) ? 1 : -1]
           ^
In file included from ../../protobuf-2.6.0/src/google/protobuf/message.cc:51:0:
../../protobuf-2.6.0/src/google/protobuf/stubs/map_util.h: In function 'void google::protobuf::InsertOrDie(Collection*, const typename Collection::value_type::first_type&, const typename Collection::value_type::second_type&)':
../../protobuf-2.6.0/src/google/protobuf/stubs/map_util.h:356:43: warning: typedef 'value_type' locally defined but not used [-Wunused-local-typedefs]
   typedef typename Collection::value_type value_type;
                                           ^
../../protobuf-2.6.0/src/google/protobuf/stubs/map_util.h: In function 'void google::protobuf::InsertOrDieNoPrint(Collection*, const typename Collection::value_type::first_type&, const typename Collection::value_type::second_type&)':
../../protobuf-2.6.0/src/google/protobuf/stubs/map_util.h:367:43: warning: typedef 'value_type' locally defined but not used [-Wunused-local-typedefs]
   typedef typename Collection::value_type value_type;
                                           ^
depbase=`echo google/protobuf/reflection_ops.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
	/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I..    -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type  -g -O2 -MT google/protobuf/reflection_ops.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/reflection_ops.lo ../../protobuf-2.6.0/src/google/protobuf/reflection_ops.cc &&\
	mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -MT google/protobuf/reflection_ops.lo -MD -MP -MF google/protobuf/.deps/reflection_ops.Tpo -c ../../protobuf-2.6.0/src/google/protobuf/reflection_ops.cc  -fPIC -DPIC -o google/protobuf/.libs/reflection_ops.o
In file included from ../../protobuf-2.6.0/src/google/protobuf/reflection_ops.h:41:0,
                 from ../../protobuf-2.6.0/src/google/protobuf/reflection_ops.cc:38:
../../protobuf-2.6.0/src/google/protobuf/stubs/strutil.h: In function 'google::protobuf::int64 google::protobuf::strto64(const char*, char**, int)':
../../protobuf-2.6.0/src/google/protobuf/stubs/strutil.h:341:25: warning: typedef 'sizeof_int64_is_not_sizeof_long_long' locally defined but not used [-Wunused-local-typedefs]
                         sizeof_int64_is_not_sizeof_long_long);
                         ^
../../protobuf-2.6.0/src/google/protobuf/stubs/common.h:382:11: note: in definition of macro 'GOOGLE_COMPILE_ASSERT'
           msg[bool(expr) ? 1 : -1]
           ^
../../protobuf-2.6.0/src/google/protobuf/stubs/strutil.h: In function 'google::protobuf::uint64 google::protobuf::strtou64(const char*, char**, int)':
../../protobuf-2.6.0/src/google/protobuf/stubs/strutil.h:347:25: warning: typedef 'sizeof_uint64_is_not_sizeof_long_long' locally defined but not used [-Wunused-local-typedefs]
                         sizeof_uint64_is_not_sizeof_long_long);
                         ^
../../protobuf-2.6.0/src/google/protobuf/stubs/common.h:382:11: note: in definition of macro 'GOOGLE_COMPILE_ASSERT'
           msg[bool(expr) ? 1 : -1]
           ^
depbase=`echo google/protobuf/service.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
	/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I..    -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type  -g -O2 -MT google/protobuf/service.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/service.lo ../../protobuf-2.6.0/src/google/protobuf/service.cc &&\
	mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -MT google/protobuf/service.lo -MD -MP -MF google/protobuf/.deps/service.Tpo -c ../../protobuf-2.6.0/src/google/protobuf/service.cc  -fPIC -DPIC -o google/protobuf/.libs/service.o
depbase=`echo google/protobuf/text_format.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
	/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I..    -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type  -g -O2 -MT google/protobuf/text_format.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/text_format.lo ../../protobuf-2.6.0/src/google/protobuf/text_format.cc &&\
	mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -MT google/protobuf/text_format.lo -MD -MP -MF google/protobuf/.deps/text_format.Tpo -c ../../protobuf-2.6.0/src/google/protobuf/text_format.cc  -fPIC -DPIC -o google/protobuf/.libs/text_format.o
In file included from ../../protobuf-2.6.0/src/google/protobuf/text_format.h:46:0,
                 from ../../protobuf-2.6.0/src/google/protobuf/text_format.cc:43:
../../protobuf-2.6.0/src/google/protobuf/stubs/strutil.h: In function 'google::protobuf::int64 google::protobuf::strto64(const char*, char**, int)':
../../protobuf-2.6.0/src/google/protobuf/stubs/strutil.h:341:25: warning: typedef 'sizeof_int64_is_not_sizeof_long_long' locally defined but not used [-Wunused-local-typedefs]
                         sizeof_int64_is_not_sizeof_long_long);
                         ^
../../protobuf-2.6.0/src/google/protobuf/stubs/common.h:382:11: note: in definition of macro 'GOOGLE_COMPILE_ASSERT'
           msg[bool(expr) ? 1 : -1]
           ^
../../protobuf-2.6.0/src/google/protobuf/stubs/strutil.h: In function 'google::protobuf::uint64 google::protobuf::strtou64(const char*, char**, int)':
../../protobuf-2.6.0/src/google/protobuf/stubs/strutil.h:347:25: warning: typedef 'sizeof_uint64_is_not_sizeof_long_long' locally defined but not used [-Wunused-local-typedefs]
                         sizeof_uint64_is_not_sizeof_long_long);
                         ^
../../protobuf-2.6.0/src/google/protobuf/stubs/common.h:382:11: note: in definition of macro 'GOOGLE_COMPILE_ASSERT'
           msg[bool(expr) ? 1 : -1]
           ^
In file included from ../../protobuf-2.6.0/src/google/protobuf/text_format.cc:54:0:
../../protobuf-2.6.0/src/google/protobuf/stubs/map_util.h: In function 'void google::protobuf::InsertOrDie(Collection*, const typename Collection::value_type::first_type&, const typename Collection::value_type::second_type&)':
../../protobuf-2.6.0/src/google/protobuf/stubs/map_util.h:356:43: warning: typedef 'value_type' locally defined but not used [-Wunused-local-typedefs]
   typedef typename Collection::value_type value_type;
                                           ^
../../protobuf-2.6.0/src/google/protobuf/stubs/map_util.h: In function 'void google::protobuf::InsertOrDieNoPrint(Collection*, const typename Collection::value_type::first_type&, const typename Collection::value_type::second_type&)':
../../protobuf-2.6.0/src/google/protobuf/stubs/map_util.h:367:43: warning: typedef 'value_type' locally defined but not used [-Wunused-local-typedefs]
   typedef typename Collection::value_type value_type;
                                           ^
depbase=`echo google/protobuf/unknown_field_set.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
	/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I..    -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type  -g -O2 -MT google/protobuf/unknown_field_set.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/unknown_field_set.lo ../../protobuf-2.6.0/src/google/protobuf/unknown_field_set.cc &&\
	mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -MT google/protobuf/unknown_field_set.lo -MD -MP -MF google/protobuf/.deps/unknown_field_set.Tpo -c ../../protobuf-2.6.0/src/google/protobuf/unknown_field_set.cc  -fPIC -DPIC -o google/protobuf/.libs/unknown_field_set.o
depbase=`echo google/protobuf/wire_format.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
	/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I..    -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type  -g -O2 -MT google/protobuf/wire_format.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/wire_format.lo ../../protobuf-2.6.0/src/google/protobuf/wire_format.cc &&\
	mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -MT google/protobuf/wire_format.lo -MD -MP -MF google/protobuf/.deps/wire_format.Tpo -c ../../protobuf-2.6.0/src/google/protobuf/wire_format.cc  -fPIC -DPIC -o google/protobuf/.libs/wire_format.o
depbase=`echo google/protobuf/io/gzip_stream.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
	/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I..    -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type  -g -O2 -MT google/protobuf/io/gzip_stream.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/io/gzip_stream.lo ../../protobuf-2.6.0/src/google/protobuf/io/gzip_stream.cc &&\
	mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -MT google/protobuf/io/gzip_stream.lo -MD -MP -MF google/protobuf/io/.deps/gzip_stream.Tpo -c ../../protobuf-2.6.0/src/google/protobuf/io/gzip_stream.cc  -fPIC -DPIC -o google/protobuf/io/.libs/gzip_stream.o
depbase=`echo google/protobuf/io/printer.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
	/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I..    -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type  -g -O2 -MT google/protobuf/io/printer.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/io/printer.lo ../../protobuf-2.6.0/src/google/protobuf/io/printer.cc &&\
	mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -MT google/protobuf/io/printer.lo -MD -MP -MF google/protobuf/io/.deps/printer.Tpo -c ../../protobuf-2.6.0/src/google/protobuf/io/printer.cc  -fPIC -DPIC -o google/protobuf/io/.libs/printer.o
depbase=`echo google/protobuf/io/strtod.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
	/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I..    -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type  -g -O2 -MT google/protobuf/io/strtod.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/io/strtod.lo ../../protobuf-2.6.0/src/google/protobuf/io/strtod.cc &&\
	mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -MT google/protobuf/io/strtod.lo -MD -MP -MF google/protobuf/io/.deps/strtod.Tpo -c ../../protobuf-2.6.0/src/google/protobuf/io/strtod.cc  -fPIC -DPIC -o google/protobuf/io/.libs/strtod.o
depbase=`echo google/protobuf/io/tokenizer.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
	/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I..    -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type  -g -O2 -MT google/protobuf/io/tokenizer.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/io/tokenizer.lo ../../protobuf-2.6.0/src/google/protobuf/io/tokenizer.cc &&\
	mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -MT google/protobuf/io/tokenizer.lo -MD -MP -MF google/protobuf/io/.deps/tokenizer.Tpo -c ../../protobuf-2.6.0/src/google/protobuf/io/tokenizer.cc  -fPIC -DPIC -o google/protobuf/io/.libs/tokenizer.o
In file included from ../../protobuf-2.6.0/src/google/protobuf/io/tokenizer.h:42:0,
                 from ../../protobuf-2.6.0/src/google/protobuf/io/tokenizer.cc:91:
../../protobuf-2.6.0/src/google/protobuf/stubs/strutil.h: In function 'google::protobuf::int64 google::protobuf::strto64(const char*, char**, int)':
../../protobuf-2.6.0/src/google/protobuf/stubs/strutil.h:341:25: warning: typedef 'sizeof_int64_is_not_sizeof_long_long' locally defined but not used [-Wunused-local-typedefs]
                         sizeof_int64_is_not_sizeof_long_long);
                         ^
../../protobuf-2.6.0/src/google/protobuf/stubs/common.h:382:11: note: in definition of macro 'GOOGLE_COMPILE_ASSERT'
           msg[bool(expr) ? 1 : -1]
           ^
../../protobuf-2.6.0/src/google/protobuf/stubs/strutil.h: In function 'google::protobuf::uint64 google::protobuf::strtou64(const char*, char**, int)':
../../protobuf-2.6.0/src/google/protobuf/stubs/strutil.h:347:25: warning: typedef 'sizeof_uint64_is_not_sizeof_long_long' locally defined but not used [-Wunused-local-typedefs]
                         sizeof_uint64_is_not_sizeof_long_long);
                         ^
../../protobuf-2.6.0/src/google/protobuf/stubs/common.h:382:11: note: in definition of macro 'GOOGLE_COMPILE_ASSERT'
           msg[bool(expr) ? 1 : -1]
           ^
depbase=`echo google/protobuf/io/zero_copy_stream_impl.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
	/bin/bash ../libtool  --tag=CXX   --mode=compile g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I..    -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type  -g -O2 -MT google/protobuf/io/zero_copy_stream_impl.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/io/zero_copy_stream_impl.lo ../../protobuf-2.6.0/src/google/protobuf/io/zero_copy_stream_impl.cc &&\
	mv -f $depbase.Tpo $depbase.Plo
libtool: compile:  g++ -std=c++11 -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I.. -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -g -O2 -MT google/protobuf/io/zero_copy_stream_impl.lo -MD -MP -MF google/protobuf/io/.deps/zero_copy_stream_impl.Tpo -c ../../protobuf-2.6.0/src/google/protobuf/io/zero_copy_stream_impl.cc  -fPIC -DPIC -o google/protobuf/io/.libs/zero_copy_stream_impl.o
/bin/bash ../libtool  --tag=CXX   --mode=link g++ -std=c++11 -pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type  -g -O2 -version-info 9:0:0 -export-dynamic -no-undefined  -o libprotobuf.la -rpath /usr/local/lib google/protobuf/stubs/atomicops_internals_x86_gcc.lo google/protobuf/stubs/atomicops_internals_x86_msvc.lo google/protobuf/stubs/common.lo google/protobuf/stubs/once.lo google/protobuf/stubs/stringprintf.lo google/protobuf/extension_set.lo google/protobuf/generated_message_util.lo google/protobuf/message_lite.lo google/protobuf/repeated_field.lo google/protobuf/wire_format_lite.lo google/protobuf/io/coded_stream.lo google/protobuf/io/zero_copy_stream.lo google/protobuf/io/zero_copy_stream_impl_lite.lo google/protobuf/stubs/strutil.lo google/protobuf/stubs/substitute.lo google/protobuf/stubs/structurally_valid.lo google/protobuf/descriptor.lo google/protobuf/descriptor.pb.lo google/protobuf/descriptor_database.lo google/protobuf/dynamic_message.lo google/protobuf/extension_set_heavy.lo google/protobuf/generated_message_reflection.lo google/protobuf/message.lo google/protobuf/reflection_ops.lo google/protobuf/service.lo google/protobuf/text_format.lo google/protobuf/unknown_field_set.lo google/protobuf/wire_format.lo google/protobuf/io/gzip_stream.lo google/protobuf/io/printer.lo google/protobuf/io/strtod.lo google/protobuf/io/tokenizer.lo google/protobuf/io/zero_copy_stream_impl.lo -lpthread -lz 
libtool: link: g++ -std=c++11  -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.8/crtbeginS.o  google/protobuf/stubs/.libs/atomicops_internals_x86_gcc.o google/protobuf/stubs/.libs/atomicops_internals_x86_msvc.o google/protobuf/stubs/.libs/common.o google/protobuf/stubs/.libs/once.o google/protobuf/stubs/.libs/stringprintf.o google/protobuf/.libs/extension_set.o google/protobuf/.libs/generated_message_util.o google/protobuf/.libs/message_lite.o google/protobuf/.libs/repeated_field.o google/protobuf/.libs/wire_format_lite.o google/protobuf/io/.libs/coded_stream.o google/protobuf/io/.libs/zero_copy_stream.o google/protobuf/io/.libs/zero_copy_stream_impl_lite.o google/protobuf/stubs/.libs/strutil.o google/protobuf/stubs/.libs/substitute.o google/protobuf/stubs/.libs/structurally_valid.o google/protobuf/.libs/descriptor.o google/protobuf/.libs/descriptor.pb.o google/protobuf/.libs/descriptor_database.o google/protobuf/.libs/dynamic_message.o google/protobuf/.libs/extension_set_heavy.o google/protobuf/.libs/generated_message_reflection.o google/protobuf/.libs/message.o google/protobuf/.libs/reflection_ops.o google/protobuf/.libs/service.o google/protobuf/.libs/text_format.o google/protobuf/.libs/unknown_field_set.o google/protobuf/.libs/wire_format.o google/protobuf/io/.libs/gzip_stream.o google/protobuf/io/.libs/printer.o google/protobuf/io/.libs/strtod.o google/protobuf/io/.libs/tokenizer.o google/protobuf/io/.libs/zero_copy_stream_impl.o   -lpthread -lz -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.8/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/crtn.o  -pthread -O2   -pthread -Wl,-soname -Wl,libprotobuf.so.9 -o .libs/libprotobuf.so.9.0.0
libtool: link: (cd ".libs" && rm -f "libprotobuf.so.9" && ln -s "libprotobuf.so.9.0.0" "libprotobuf.so.9")
libtool: link: (cd ".libs" && rm -f "libprotobuf.so" && ln -s "libprotobuf.so.9.0.0" "libprotobuf.so")
libtool: link: ( cd ".libs" && rm -f "libprotobuf.la" && ln -s "../libprotobuf.la" "libprotobuf.la" )
make[2]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/flowWorkspace/src/pb_build/src'
make[1]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/flowWorkspace/src/pb_build'
configure: Using the following compilation and linking flags for flowWorkspace
configure:    PKG_CPPFLAGS=-I/usr/include/libxml2 -Iprotobuf-2.6.0/src
configure:    PKG_LIBS=-lxml2 
configure: creating ./config.status
config.status: creating src/Makevars
** libs
g++ -std=c++11 -I/home/biocbuild/bbs-3.3-bioc/R/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -I/usr/local/include -I"/home/biocbuild/bbs-3.3-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.3-bioc/R/library/BH/include"   -fpic  -g -O2 -c GatingHierarchy.cpp -o GatingHierarchy.o
g++ -std=c++11 -I/home/biocbuild/bbs-3.3-bioc/R/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -I/usr/local/include -I"/home/biocbuild/bbs-3.3-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.3-bioc/R/library/BH/include"   -fpic  -g -O2 -c GatingSet.cpp -o GatingSet.o
g++ -std=c++11 -I/home/biocbuild/bbs-3.3-bioc/R/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -I/usr/local/include -I"/home/biocbuild/bbs-3.3-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.3-bioc/R/library/BH/include"   -fpic  -g -O2 -c GatingSet.pb.cc -o GatingSet.pb.o
g++ -std=c++11 -I/home/biocbuild/bbs-3.3-bioc/R/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -I/usr/local/include -I"/home/biocbuild/bbs-3.3-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.3-bioc/R/library/BH/include"   -fpic  -g -O2 -c POPINDICES.cpp -o POPINDICES.o
g++ -std=c++11 -I/home/biocbuild/bbs-3.3-bioc/R/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -I/usr/local/include -I"/home/biocbuild/bbs-3.3-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.3-bioc/R/library/BH/include"   -fpic  -g -O2 -c R_API.cpp -o R_API.o
g++ -std=c++11 -I/home/biocbuild/bbs-3.3-bioc/R/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -I/usr/local/include -I"/home/biocbuild/bbs-3.3-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.3-bioc/R/library/BH/include"   -fpic  -g -O2 -c R_GatingHierarchy.cpp -o R_GatingHierarchy.o
g++ -std=c++11 -I/home/biocbuild/bbs-3.3-bioc/R/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -I/usr/local/include -I"/home/biocbuild/bbs-3.3-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.3-bioc/R/library/BH/include"   -fpic  -g -O2 -c R_GatingSet.cpp -o R_GatingSet.o
g++ -std=c++11 -I/home/biocbuild/bbs-3.3-bioc/R/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -I/usr/local/include -I"/home/biocbuild/bbs-3.3-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.3-bioc/R/library/BH/include"   -fpic  -g -O2 -c RcppExports.cpp -o RcppExports.o
g++ -std=c++11 -I/home/biocbuild/bbs-3.3-bioc/R/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -I/usr/local/include -I"/home/biocbuild/bbs-3.3-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.3-bioc/R/library/BH/include"   -fpic  -g -O2 -c calibrationTable.cpp -o calibrationTable.o
g++ -std=c++11 -I/home/biocbuild/bbs-3.3-bioc/R/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -I/usr/local/include -I"/home/biocbuild/bbs-3.3-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.3-bioc/R/library/BH/include"   -fpic  -g -O2 -c compensation.cpp -o compensation.o
g++ -std=c++11 -I/home/biocbuild/bbs-3.3-bioc/R/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -I/usr/local/include -I"/home/biocbuild/bbs-3.3-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.3-bioc/R/library/BH/include"   -fpic  -g -O2 -c delimitedMessage.cpp -o delimitedMessage.o
g++ -std=c++11 -I/home/biocbuild/bbs-3.3-bioc/R/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -I/usr/local/include -I"/home/biocbuild/bbs-3.3-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.3-bioc/R/library/BH/include"   -fpic  -g -O2 -c flowData.cpp -o flowData.o
g++ -std=c++11 -I/home/biocbuild/bbs-3.3-bioc/R/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -I/usr/local/include -I"/home/biocbuild/bbs-3.3-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.3-bioc/R/library/BH/include"   -fpic  -g -O2 -c flowJoWorkspace.cpp -o flowJoWorkspace.o
g++ -std=c++11 -I/home/biocbuild/bbs-3.3-bioc/R/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -I/usr/local/include -I"/home/biocbuild/bbs-3.3-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.3-bioc/R/library/BH/include"   -fpic  -g -O2 -c gate.cpp -o gate.o
g++ -std=c++11 -I/home/biocbuild/bbs-3.3-bioc/R/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -I/usr/local/include -I"/home/biocbuild/bbs-3.3-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.3-bioc/R/library/BH/include"   -fpic  -g -O2 -c global.cpp -o global.o
g++ -std=c++11 -I/home/biocbuild/bbs-3.3-bioc/R/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -I/usr/local/include -I"/home/biocbuild/bbs-3.3-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.3-bioc/R/library/BH/include"   -fpic  -g -O2 -c macFlowJoWorkspace.cpp -o macFlowJoWorkspace.o
g++ -std=c++11 -I/home/biocbuild/bbs-3.3-bioc/R/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -I/usr/local/include -I"/home/biocbuild/bbs-3.3-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.3-bioc/R/library/BH/include"   -fpic  -g -O2 -c nodeProperties.cpp -o nodeProperties.o
g++ -std=c++11 -I/home/biocbuild/bbs-3.3-bioc/R/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -I/usr/local/include -I"/home/biocbuild/bbs-3.3-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.3-bioc/R/library/BH/include"   -fpic  -g -O2 -c spline.cpp -o spline.o
g++ -std=c++11 -I/home/biocbuild/bbs-3.3-bioc/R/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -I/usr/local/include -I"/home/biocbuild/bbs-3.3-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.3-bioc/R/library/BH/include"   -fpic  -g -O2 -c transformation.cpp -o transformation.o
g++ -std=c++11 -I/home/biocbuild/bbs-3.3-bioc/R/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -I/usr/local/include -I"/home/biocbuild/bbs-3.3-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.3-bioc/R/library/BH/include"   -fpic  -g -O2 -c winFlowJoWorkspace.cpp -o winFlowJoWorkspace.o
g++ -std=c++11 -I/home/biocbuild/bbs-3.3-bioc/R/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -I/usr/local/include -I"/home/biocbuild/bbs-3.3-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.3-bioc/R/library/BH/include"   -fpic  -g -O2 -c workspace.cpp -o workspace.o
g++ -std=c++11 -I/home/biocbuild/bbs-3.3-bioc/R/include -DNDEBUG -DROUT -I/usr/include/libxml2 -Iprotobuf-2.6.0/src -I/usr/local/include -I"/home/biocbuild/bbs-3.3-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.3-bioc/R/library/BH/include"   -fpic  -g -O2 -c wsNode.cpp -o wsNode.o
mkdir -p "/home/biocbuild/bbs-3.3-bioc/R/library/flowWorkspace/lib"
ar rs "/home/biocbuild/bbs-3.3-bioc/R/library/flowWorkspace/lib/libprotobuf.a" pb_build/src/google/protobuf/.libs/*.o pb_build/src/google/protobuf/stubs/.libs/*.o pb_build/src/google/protobuf/io/.libs/*.o
ar: creating /home/biocbuild/bbs-3.3-bioc/R/library/flowWorkspace/lib/libprotobuf.a
g++ -std=c++11 -shared -L/home/biocbuild/bbs-3.3-bioc/R/lib -L/usr/local/lib -o flowWorkspace.so GatingHierarchy.o GatingSet.o GatingSet.pb.o POPINDICES.o R_API.o R_GatingHierarchy.o R_GatingSet.o RcppExports.o calibrationTable.o compensation.o delimitedMessage.o flowData.o flowJoWorkspace.o gate.o global.o macFlowJoWorkspace.o nodeProperties.o spline.o transformation.o winFlowJoWorkspace.o workspace.o wsNode.o /home/biocbuild/bbs-3.3-bioc/R/library/flowWorkspace/lib/libprotobuf.a /home/biocbuild/bbs-3.3-bioc/R/library/flowCore/lib/libboost_regex.a -lxml2 -L/home/biocbuild/bbs-3.3-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.3-bioc/R/library/flowWorkspace/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (flowWorkspace)