flowClust 3.10.1
Greg Finak , Mike Jiang
| Snapshot Date: 2016-10-12 17:20:15 -0700 (Wed, 12 Oct 2016) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_3/madman/Rpacks/flowClust | | Last Changed Rev: 118920 / Revision: 122332 | | Last Changed Date: 2016-06-23 16:24:16 -0700 (Thu, 23 Jun 2016) |
| zin2 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | OK | OK | [ OK ] | |  |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK | OK | |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | OK | OK | |
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### Running command:
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### /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD check --no-vignettes --timings flowClust_3.10.1.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck’
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘flowClust/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘flowClust’ version ‘3.10.1’
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Depends: includes the non-default packages:
‘Biobase’ ‘graph’ ‘RBGL’ ‘ellipse’ ‘flowViz’ ‘mnormt’ ‘corpcor’
‘flowCore’ ‘clue’
Adding so many packages to the search path is excessive and importing
selectively is preferable.
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘flowClust’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 8.5Mb
sub-directories of 1Mb or more:
libs 7.7Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' call to ‘parallel’ in package code.
Please use :: or requireNamespace() instead.
See section 'Suggested packages' in the 'Writing R Extensions' manual.
Packages in Depends field not imported from:
‘RBGL’ ‘corpcor’ ‘ellipse’ ‘flowViz’ ‘mnormt’
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
Unexported object imported by a ':::' call: ‘flowViz:::fplot’
See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.estimateHyperParameters: no visible global function definition for
‘cov.shrink’
.estimateHyperParameters: no visible global function definition for
‘cov’
.estimateHyperParameters: no visible binding for global variable ‘var’
.estimateHyperParameters: no visible global function definition for
‘optimize’
.fcbMap: no visible global function definition for ‘qf’
.flowClustK: no visible global function definition for ‘var’
.flowClustK: no visible global function definition for ‘qf’
.flowClustK: no visible global function definition for ‘qchisq’
.flowClustK: no visible global function definition for ‘quantile’
.flowClustK: no visible global function definition for ‘kmeans’
.mergePriors: no visible global function definition for ‘optim’
SimulateMixture: no visible global function definition for ‘rmt’
dmvt: no visible global function definition for ‘mahalanobis’
flowClust: no visible global function definition for ‘detectCores’
flowClust: no visible global function definition for ‘mclapply’
flowClust2Prior: no visible global function definition for ‘cov’
peakMatch : <anonymous>: no visible global function definition for
‘dist’
plotPrior: no visible global function definition for ‘na.omit’
plotPrior: no visible global function definition for ‘points’
plotPrior: no visible global function definition for ‘lines’
plotPrior: no visible global function definition for ‘ellipse’
plotPrior: no visible global function definition for ‘abline’
plotPrior: no visible global function definition for ‘qnorm’
%in%,flowFrame-tmixFilter: no visible global function definition for
‘parameters’
hist,flowClust: no visible global function definition for ‘curve’
hist,flowClust: no visible global function definition for ‘stripchart’
mkPrior,missing-flowFrame-missing-missing: no visible global function
definition for ‘cov.shrink’
mkPrior,missing-flowFrame-missing-missing: no visible global function
definition for ‘cov’
mkPrior,polygonGate-flowFrame-missing-missing: no visible global
function definition for ‘na.omit’
mkPrior,polygonGate-flowFrame-missing-missing: no visible global
function definition for ‘parameters’
mkPrior,polygonGate-flowFrame-missing-missing: no visible global
function definition for ‘cov’
mkPrior,polygonGate-flowFrame-numeric-matrix: no visible global
function definition for ‘na.omit’
mkPrior,polygonGate-flowFrame-numeric-matrix: no visible global
function definition for ‘parameters’
mkPrior,polygonGate-flowFrame-numeric-matrix: no visible global
function definition for ‘cov’
mkPrior,rectangleGate-flowFrame-missing-missing: no visible global
function definition for ‘na.omit’
mkPrior,rectangleGate-flowFrame-missing-missing: no visible global
function definition for ‘parameters’
mkPrior,rectangleGate-flowFrame-missing-missing: no visible global
function definition for ‘cov’
mkPrior,rectangleGate-flowFrame-numeric-matrix: no visible global
function definition for ‘na.omit’
mkPrior,rectangleGate-flowFrame-numeric-matrix: no visible global
function definition for ‘parameters’
mkPrior,rectangleGate-flowFrame-numeric-matrix: no visible global
function definition for ‘cov’
plot,flowClust-missing: no visible global function definition for
‘gray’
plot,flowClust-missing: no visible global function definition for
‘title’
plot,flowClust-missing: no visible global function definition for
‘points’
plot,flowClust-missing: no visible global function definition for ‘qf’
plot,flowClust-missing: no visible global function definition for
‘qchisq’
plot,flowClustList-missing: no visible global function definition for
‘gray’
plot,flowDens-missing: no visible global function definition for
‘contour’
plot,flowDens-missing: no visible global function definition for
‘heat.colors’
plot,flowDens-missing: no visible global function definition for
‘rainbow’
plot,flowDens-missing: no visible global function definition for
‘terrain.colors’
plot,flowDens-missing: no visible global function definition for
‘topo.colors’
plot,flowDens-missing: no visible global function definition for
‘cm.colors’
plot,flowDens-missing: no visible global function definition for ‘gray’
plot,flowDens-missing: no visible global function definition for
‘image’
ruleOutliers<-,flowClust-list: no visible global function definition
for ‘qf’
ruleOutliers<-,flowClust-list: no visible global function definition
for ‘qchisq’
show,tmixFilter: no visible global function definition for ‘parameters’
summarizeFilter,tmixFilterResult-tmixFilter: no visible global function
definition for ‘parameters’
Undefined global functions or variables:
abline cm.colors contour cov cov.shrink curve detectCores dist
ellipse gray heat.colors image kmeans lines mahalanobis mclapply
na.omit optim optimize parameters points qchisq qf qnorm quantile
rainbow rmt stripchart terrain.colors title topo.colors var
Consider adding
importFrom("grDevices", "cm.colors", "gray", "heat.colors", "rainbow",
"terrain.colors", "topo.colors")
importFrom("graphics", "abline", "contour", "curve", "image", "lines",
"points", "stripchart", "title")
importFrom("stats", "cov", "dist", "kmeans", "mahalanobis", "na.omit",
"optim", "optimize", "qchisq", "qf", "qnorm", "quantile",
"var")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... NOTE
GNU make is a SystemRequirements.
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 5 NOTEs
See
‘/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00check.log’
for details.
* installing *source* package ‘flowClust’ ...
configure: Using bundled GSL.
configure: Searching for the compilers specified by R.
checking for gcc... gcc -std=gnu99
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -std=gnu99 accepts -g... yes
checking for gcc -std=gnu99 option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -std=gnu99 -E
untarring gsl...
configure: Preparing to compile GSL.
configure: Configuring bundled GSL.
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether to enable maintainer-specific portions of Makefiles... no
checking whether make sets $(MAKE)... (cached) yes
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking for gcc... gcc -std=gnu99
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -std=gnu99 accepts -g... yes
checking for gcc -std=gnu99 option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -std=gnu99 -E
checking whether ln -s works... yes
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by gcc -std=gnu99... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking the maximum length of command line arguments... 1572864
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for ar... ar
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc -std=gnu99 object... ok
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc -std=gnu99 supports -fno-rtti -fno-exceptions... no
checking for gcc -std=gnu99 option to produce PIC... -fPIC -DPIC
checking if gcc -std=gnu99 PIC flag -fPIC -DPIC works... yes
checking if gcc -std=gnu99 static flag -static works... yes
checking if gcc -std=gnu99 supports -c -o file.o... yes
checking if gcc -std=gnu99 supports -c -o file.o... (cached) yes
checking whether the gcc -std=gnu99 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for size_t... yes
checking for working volatile... yes
checking for inline... inline
checking whether char is unsigned... no
checking for GNU-style extern inline... no
checking for C99-style inline... yes
checking ieeefp.h usability... no
checking ieeefp.h presence... no
checking for ieeefp.h... no
checking for vprintf... yes
checking for _doprnt... no
checking for memcpy... yes
checking for memmove... yes
checking for strdup... yes
checking for strtol... yes
checking for strtoul... yes
checking for EXIT_SUCCESS and EXIT_FAILURE... yes
checking for cos in -lm... yes
checking whether feenableexcept is declared... yes
checking whether fesettrapenable is declared... no
checking whether hypot is declared... yes
checking whether expm1 is declared... yes
checking whether acosh is declared... yes
checking whether asinh is declared... yes
checking whether atanh is declared... yes
checking whether ldexp is declared... yes
checking whether frexp is declared... yes
checking whether isinf is declared... yes
checking whether isfinite is declared... yes
checking whether finite is declared... yes
checking whether isnan is declared... yes
checking whether log1p is declared... yes
checking for long double stdio... yes
checking for extended floating point registers... yes
checking for IEEE arithmetic interface type... gnux86
checking for FPU_SETCW... yes
checking for SSE extensions... yes
checking for IEEE compiler flags... none
checking for IEEE comparisons... yes
checking for IEEE denormalized values... yes
configure: creating ./config.status
config.status: creating gsl_version.h
config.status: creating gsl.spec
config.status: creating gsl/Makefile
config.status: creating block/Makefile
config.status: creating matrix/Makefile
config.status: creating vector/Makefile
config.status: creating rng/Makefile
config.status: creating randist/Makefile
config.status: creating cdf/Makefile
config.status: creating cblas/Makefile
config.status: creating specfunc/Makefile
config.status: creating linalg/Makefile
config.status: creating statistics/Makefile
config.status: creating blas/Makefile
config.status: creating roots/Makefile
config.status: creating err/Makefile
config.status: creating min/Makefile
config.status: creating permutation/Makefile
config.status: creating complex/Makefile
config.status: creating sys/Makefile
config.status: creating eigen/Makefile
config.status: creating Makefile
config.status: creating config.h
config.status: executing libtool commands
cp: will not overwrite just-created 'gsl/test.h' with 'roots/test.h'
cp: will not overwrite just-created 'gsl/error.h' with 'specfunc/error.h'
cp: will not overwrite just-created 'gsl/view.h' with 'vector/view.h'
Making install in gsl
make[1]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/gsl'
make[2]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/gsl'
make[2]: Nothing to be done for `install-exec-am'.
make[2]: Nothing to be done for `install-data-am'.
make[2]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/gsl'
make[1]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/gsl'
Making install in block
make[1]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/block'
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o init.lo init.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c init.c -fPIC -DPIC -o .libs/init.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o file.lo file.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c file.c -fPIC -DPIC -o .libs/file.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o block.lo block.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c block.c -fPIC -DPIC -o .libs/block.o
/bin/bash ../libtool --tag=CC --mode=link gcc -std=gnu99 -g -O2 -Wall -L/usr/local/lib -o libgslblock.la init.lo file.lo block.lo -lm
libtool: link: ar cru .libs/libgslblock.a .libs/init.o .libs/file.o .libs/block.o
libtool: link: ranlib .libs/libgslblock.a
libtool: link: ( cd ".libs" && rm -f "libgslblock.la" && ln -s "../libgslblock.la" "libgslblock.la" )
make[2]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/block'
make[2]: Nothing to be done for `install-exec-am'.
test -z "/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/include/gsl" || /bin/mkdir -p "/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/include/gsl"
/usr/bin/install -c -m 644 gsl_block.h gsl_block_char.h gsl_block_complex_double.h gsl_block_complex_float.h gsl_block_complex_long_double.h gsl_block_double.h gsl_block_float.h gsl_block_int.h gsl_block_long.h gsl_block_long_double.h gsl_block_short.h gsl_block_uchar.h gsl_block_uint.h gsl_block_ulong.h gsl_block_ushort.h gsl_check_range.h '/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/include/gsl'
make[2]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/block'
make[1]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/block'
Making install in matrix
make[1]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/matrix'
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o init.lo init.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c init.c -fPIC -DPIC -o .libs/init.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o matrix.lo matrix.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c matrix.c -fPIC -DPIC -o .libs/matrix.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o file.lo file.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c file.c -fPIC -DPIC -o .libs/file.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o rowcol.lo rowcol.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c rowcol.c -fPIC -DPIC -o .libs/rowcol.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o swap.lo swap.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c swap.c -fPIC -DPIC -o .libs/swap.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o copy.lo copy.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c copy.c -fPIC -DPIC -o .libs/copy.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o minmax.lo minmax.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c minmax.c -fPIC -DPIC -o .libs/minmax.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o prop.lo prop.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c prop.c -fPIC -DPIC -o .libs/prop.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o oper.lo oper.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c oper.c -fPIC -DPIC -o .libs/oper.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o getset.lo getset.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c getset.c -fPIC -DPIC -o .libs/getset.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o view.lo view.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c view.c -fPIC -DPIC -o .libs/view.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o submatrix.lo submatrix.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c submatrix.c -fPIC -DPIC -o .libs/submatrix.o
/bin/bash ../libtool --tag=CC --mode=link gcc -std=gnu99 -g -O2 -Wall -L/usr/local/lib -o libgslmatrix.la init.lo matrix.lo file.lo rowcol.lo swap.lo copy.lo minmax.lo prop.lo oper.lo getset.lo view.lo submatrix.lo -lm
libtool: link: ar cru .libs/libgslmatrix.a .libs/init.o .libs/matrix.o .libs/file.o .libs/rowcol.o .libs/swap.o .libs/copy.o .libs/minmax.o .libs/prop.o .libs/oper.o .libs/getset.o .libs/view.o .libs/submatrix.o
libtool: link: ranlib .libs/libgslmatrix.a
libtool: link: ( cd ".libs" && rm -f "libgslmatrix.la" && ln -s "../libgslmatrix.la" "libgslmatrix.la" )
make[2]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/matrix'
make[2]: Nothing to be done for `install-exec-am'.
test -z "/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/include/gsl" || /bin/mkdir -p "/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/include/gsl"
/usr/bin/install -c -m 644 gsl_matrix.h gsl_matrix_char.h gsl_matrix_complex_double.h gsl_matrix_complex_float.h gsl_matrix_complex_long_double.h gsl_matrix_double.h gsl_matrix_float.h gsl_matrix_int.h gsl_matrix_long.h gsl_matrix_long_double.h gsl_matrix_short.h gsl_matrix_uchar.h gsl_matrix_uint.h gsl_matrix_ulong.h gsl_matrix_ushort.h '/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/include/gsl'
make[2]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/matrix'
make[1]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/matrix'
Making install in vector
make[1]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/vector'
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o init.lo init.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c init.c -fPIC -DPIC -o .libs/init.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o file.lo file.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c file.c -fPIC -DPIC -o .libs/file.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o vector.lo vector.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c vector.c -fPIC -DPIC -o .libs/vector.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o copy.lo copy.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c copy.c -fPIC -DPIC -o .libs/copy.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o swap.lo swap.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c swap.c -fPIC -DPIC -o .libs/swap.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o prop.lo prop.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c prop.c -fPIC -DPIC -o .libs/prop.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o minmax.lo minmax.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c minmax.c -fPIC -DPIC -o .libs/minmax.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o oper.lo oper.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c oper.c -fPIC -DPIC -o .libs/oper.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o reim.lo reim.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c reim.c -fPIC -DPIC -o .libs/reim.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o subvector.lo subvector.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c subvector.c -fPIC -DPIC -o .libs/subvector.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o view.lo view.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c view.c -fPIC -DPIC -o .libs/view.o
/bin/bash ../libtool --tag=CC --mode=link gcc -std=gnu99 -g -O2 -Wall -L/usr/local/lib -o libgslvector.la init.lo file.lo vector.lo copy.lo swap.lo prop.lo minmax.lo oper.lo reim.lo subvector.lo view.lo -lm
libtool: link: ar cru .libs/libgslvector.a .libs/init.o .libs/file.o .libs/vector.o .libs/copy.o .libs/swap.o .libs/prop.o .libs/minmax.o .libs/oper.o .libs/reim.o .libs/subvector.o .libs/view.o
libtool: link: ranlib .libs/libgslvector.a
libtool: link: ( cd ".libs" && rm -f "libgslvector.la" && ln -s "../libgslvector.la" "libgslvector.la" )
make[2]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/vector'
make[2]: Nothing to be done for `install-exec-am'.
test -z "/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/include/gsl" || /bin/mkdir -p "/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/include/gsl"
/usr/bin/install -c -m 644 gsl_vector.h gsl_vector_char.h gsl_vector_complex.h gsl_vector_complex_double.h gsl_vector_complex_float.h gsl_vector_complex_long_double.h gsl_vector_double.h gsl_vector_float.h gsl_vector_int.h gsl_vector_long.h gsl_vector_long_double.h gsl_vector_short.h gsl_vector_uchar.h gsl_vector_uint.h gsl_vector_ulong.h gsl_vector_ushort.h '/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/include/gsl'
make[2]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/vector'
make[1]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/vector'
Making install in rng
make[1]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/rng'
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o borosh13.lo borosh13.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c borosh13.c -fPIC -DPIC -o .libs/borosh13.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o cmrg.lo cmrg.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c cmrg.c -fPIC -DPIC -o .libs/cmrg.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o coveyou.lo coveyou.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c coveyou.c -fPIC -DPIC -o .libs/coveyou.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o default.lo default.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c default.c -fPIC -DPIC -o .libs/default.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o file.lo file.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c file.c -fPIC -DPIC -o .libs/file.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o fishman18.lo fishman18.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c fishman18.c -fPIC -DPIC -o .libs/fishman18.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o fishman20.lo fishman20.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c fishman20.c -fPIC -DPIC -o .libs/fishman20.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o fishman2x.lo fishman2x.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c fishman2x.c -fPIC -DPIC -o .libs/fishman2x.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o gfsr4.lo gfsr4.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c gfsr4.c -fPIC -DPIC -o .libs/gfsr4.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o knuthran2.lo knuthran2.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c knuthran2.c -fPIC -DPIC -o .libs/knuthran2.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o knuthran.lo knuthran.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c knuthran.c -fPIC -DPIC -o .libs/knuthran.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o knuthran2002.lo knuthran2002.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c knuthran2002.c -fPIC -DPIC -o .libs/knuthran2002.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o lecuyer21.lo lecuyer21.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c lecuyer21.c -fPIC -DPIC -o .libs/lecuyer21.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o minstd.lo minstd.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c minstd.c -fPIC -DPIC -o .libs/minstd.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o mrg.lo mrg.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c mrg.c -fPIC -DPIC -o .libs/mrg.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o mt.lo mt.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c mt.c -fPIC -DPIC -o .libs/mt.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o r250.lo r250.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c r250.c -fPIC -DPIC -o .libs/r250.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o ran0.lo ran0.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ran0.c -fPIC -DPIC -o .libs/ran0.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o ran1.lo ran1.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ran1.c -fPIC -DPIC -o .libs/ran1.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o ran2.lo ran2.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ran2.c -fPIC -DPIC -o .libs/ran2.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o ran3.lo ran3.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ran3.c -fPIC -DPIC -o .libs/ran3.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o rand48.lo rand48.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c rand48.c -fPIC -DPIC -o .libs/rand48.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o rand.lo rand.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c rand.c -fPIC -DPIC -o .libs/rand.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o random.lo random.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c random.c -fPIC -DPIC -o .libs/random.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o randu.lo randu.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c randu.c -fPIC -DPIC -o .libs/randu.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o ranf.lo ranf.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ranf.c -fPIC -DPIC -o .libs/ranf.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o ranlux.lo ranlux.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ranlux.c -fPIC -DPIC -o .libs/ranlux.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o ranlxd.lo ranlxd.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ranlxd.c -fPIC -DPIC -o .libs/ranlxd.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o ranlxs.lo ranlxs.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ranlxs.c -fPIC -DPIC -o .libs/ranlxs.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o ranmar.lo ranmar.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ranmar.c -fPIC -DPIC -o .libs/ranmar.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o rng.lo rng.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c rng.c -fPIC -DPIC -o .libs/rng.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o slatec.lo slatec.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c slatec.c -fPIC -DPIC -o .libs/slatec.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o taus.lo taus.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c taus.c -fPIC -DPIC -o .libs/taus.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o taus113.lo taus113.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c taus113.c -fPIC -DPIC -o .libs/taus113.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o transputer.lo transputer.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c transputer.c -fPIC -DPIC -o .libs/transputer.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o tt.lo tt.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c tt.c -fPIC -DPIC -o .libs/tt.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o types.lo types.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c types.c -fPIC -DPIC -o .libs/types.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o uni32.lo uni32.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c uni32.c -fPIC -DPIC -o .libs/uni32.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o uni.lo uni.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c uni.c -fPIC -DPIC -o .libs/uni.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o vax.lo vax.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c vax.c -fPIC -DPIC -o .libs/vax.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o waterman14.lo waterman14.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c waterman14.c -fPIC -DPIC -o .libs/waterman14.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o zuf.lo zuf.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c zuf.c -fPIC -DPIC -o .libs/zuf.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o inline.lo inline.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c inline.c -fPIC -DPIC -o .libs/inline.o
/bin/bash ../libtool --tag=CC --mode=link gcc -std=gnu99 -g -O2 -Wall -L/usr/local/lib -o libgslrng.la borosh13.lo cmrg.lo coveyou.lo default.lo file.lo fishman18.lo fishman20.lo fishman2x.lo gfsr4.lo knuthran2.lo knuthran.lo knuthran2002.lo lecuyer21.lo minstd.lo mrg.lo mt.lo r250.lo ran0.lo ran1.lo ran2.lo ran3.lo rand48.lo rand.lo random.lo randu.lo ranf.lo ranlux.lo ranlxd.lo ranlxs.lo ranmar.lo rng.lo slatec.lo taus.lo taus113.lo transputer.lo tt.lo types.lo uni32.lo uni.lo vax.lo waterman14.lo zuf.lo inline.lo -lm
libtool: link: ar cru .libs/libgslrng.a .libs/borosh13.o .libs/cmrg.o .libs/coveyou.o .libs/default.o .libs/file.o .libs/fishman18.o .libs/fishman20.o .libs/fishman2x.o .libs/gfsr4.o .libs/knuthran2.o .libs/knuthran.o .libs/knuthran2002.o .libs/lecuyer21.o .libs/minstd.o .libs/mrg.o .libs/mt.o .libs/r250.o .libs/ran0.o .libs/ran1.o .libs/ran2.o .libs/ran3.o .libs/rand48.o .libs/rand.o .libs/random.o .libs/randu.o .libs/ranf.o .libs/ranlux.o .libs/ranlxd.o .libs/ranlxs.o .libs/ranmar.o .libs/rng.o .libs/slatec.o .libs/taus.o .libs/taus113.o .libs/transputer.o .libs/tt.o .libs/types.o .libs/uni32.o .libs/uni.o .libs/vax.o .libs/waterman14.o .libs/zuf.o .libs/inline.o
libtool: link: ranlib .libs/libgslrng.a
libtool: link: ( cd ".libs" && rm -f "libgslrng.la" && ln -s "../libgslrng.la" "libgslrng.la" )
make[2]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/rng'
make[2]: Nothing to be done for `install-exec-am'.
test -z "/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/include/gsl" || /bin/mkdir -p "/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/include/gsl"
/usr/bin/install -c -m 644 gsl_rng.h '/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/include/gsl'
make[2]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/rng'
make[1]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/rng'
Making install in randist
make[1]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/randist'
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o bernoulli.lo bernoulli.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c bernoulli.c -fPIC -DPIC -o .libs/bernoulli.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o beta.lo beta.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c beta.c -fPIC -DPIC -o .libs/beta.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o bigauss.lo bigauss.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c bigauss.c -fPIC -DPIC -o .libs/bigauss.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o binomial.lo binomial.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c binomial.c -fPIC -DPIC -o .libs/binomial.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o cauchy.lo cauchy.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c cauchy.c -fPIC -DPIC -o .libs/cauchy.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o chisq.lo chisq.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c chisq.c -fPIC -DPIC -o .libs/chisq.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o dirichlet.lo dirichlet.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c dirichlet.c -fPIC -DPIC -o .libs/dirichlet.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o discrete.lo discrete.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c discrete.c -fPIC -DPIC -o .libs/discrete.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o erlang.lo erlang.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c erlang.c -fPIC -DPIC -o .libs/erlang.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o exponential.lo exponential.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c exponential.c -fPIC -DPIC -o .libs/exponential.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o exppow.lo exppow.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c exppow.c -fPIC -DPIC -o .libs/exppow.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o fdist.lo fdist.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c fdist.c -fPIC -DPIC -o .libs/fdist.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o flat.lo flat.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c flat.c -fPIC -DPIC -o .libs/flat.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o gamma.lo gamma.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c gamma.c -fPIC -DPIC -o .libs/gamma.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o gauss.lo gauss.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c gauss.c -fPIC -DPIC -o .libs/gauss.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o gausszig.lo gausszig.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c gausszig.c -fPIC -DPIC -o .libs/gausszig.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o gausstail.lo gausstail.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c gausstail.c -fPIC -DPIC -o .libs/gausstail.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o geometric.lo geometric.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c geometric.c -fPIC -DPIC -o .libs/geometric.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o gumbel.lo gumbel.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c gumbel.c -fPIC -DPIC -o .libs/gumbel.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o hyperg.lo hyperg.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c hyperg.c -fPIC -DPIC -o .libs/hyperg.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o laplace.lo laplace.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c laplace.c -fPIC -DPIC -o .libs/laplace.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o levy.lo levy.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c levy.c -fPIC -DPIC -o .libs/levy.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o logarithmic.lo logarithmic.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c logarithmic.c -fPIC -DPIC -o .libs/logarithmic.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o logistic.lo logistic.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c logistic.c -fPIC -DPIC -o .libs/logistic.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o lognormal.lo lognormal.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c lognormal.c -fPIC -DPIC -o .libs/lognormal.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o multinomial.lo multinomial.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c multinomial.c -fPIC -DPIC -o .libs/multinomial.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o nbinomial.lo nbinomial.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c nbinomial.c -fPIC -DPIC -o .libs/nbinomial.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o pareto.lo pareto.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c pareto.c -fPIC -DPIC -o .libs/pareto.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o pascal.lo pascal.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c pascal.c -fPIC -DPIC -o .libs/pascal.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o poisson.lo poisson.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c poisson.c -fPIC -DPIC -o .libs/poisson.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o rayleigh.lo rayleigh.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c rayleigh.c -fPIC -DPIC -o .libs/rayleigh.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o shuffle.lo shuffle.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c shuffle.c -fPIC -DPIC -o .libs/shuffle.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o sphere.lo sphere.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c sphere.c -fPIC -DPIC -o .libs/sphere.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o tdist.lo tdist.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c tdist.c -fPIC -DPIC -o .libs/tdist.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o weibull.lo weibull.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c weibull.c -fPIC -DPIC -o .libs/weibull.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o landau.lo landau.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c landau.c -fPIC -DPIC -o .libs/landau.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o binomial_tpe.lo binomial_tpe.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c binomial_tpe.c -fPIC -DPIC -o .libs/binomial_tpe.o
/bin/bash ../libtool --tag=CC --mode=link gcc -std=gnu99 -g -O2 -Wall -L/usr/local/lib -o libgslrandist.la bernoulli.lo beta.lo bigauss.lo binomial.lo cauchy.lo chisq.lo dirichlet.lo discrete.lo erlang.lo exponential.lo exppow.lo fdist.lo flat.lo gamma.lo gauss.lo gausszig.lo gausstail.lo geometric.lo gumbel.lo hyperg.lo laplace.lo levy.lo logarithmic.lo logistic.lo lognormal.lo multinomial.lo nbinomial.lo pareto.lo pascal.lo poisson.lo rayleigh.lo shuffle.lo sphere.lo tdist.lo weibull.lo landau.lo binomial_tpe.lo -lm
libtool: link: ar cru .libs/libgslrandist.a .libs/bernoulli.o .libs/beta.o .libs/bigauss.o .libs/binomial.o .libs/cauchy.o .libs/chisq.o .libs/dirichlet.o .libs/discrete.o .libs/erlang.o .libs/exponential.o .libs/exppow.o .libs/fdist.o .libs/flat.o .libs/gamma.o .libs/gauss.o .libs/gausszig.o .libs/gausstail.o .libs/geometric.o .libs/gumbel.o .libs/hyperg.o .libs/laplace.o .libs/levy.o .libs/logarithmic.o .libs/logistic.o .libs/lognormal.o .libs/multinomial.o .libs/nbinomial.o .libs/pareto.o .libs/pascal.o .libs/poisson.o .libs/rayleigh.o .libs/shuffle.o .libs/sphere.o .libs/tdist.o .libs/weibull.o .libs/landau.o .libs/binomial_tpe.o
libtool: link: ranlib .libs/libgslrandist.a
libtool: link: ( cd ".libs" && rm -f "libgslrandist.la" && ln -s "../libgslrandist.la" "libgslrandist.la" )
make[2]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/randist'
make[2]: Nothing to be done for `install-exec-am'.
test -z "/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/include/gsl" || /bin/mkdir -p "/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/include/gsl"
/usr/bin/install -c -m 644 gsl_randist.h '/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/include/gsl'
make[2]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/randist'
make[1]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/randist'
Making install in cdf
make[1]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/cdf'
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o beta.lo beta.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c beta.c -fPIC -DPIC -o .libs/beta.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o betainv.lo betainv.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c betainv.c -fPIC -DPIC -o .libs/betainv.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o cauchy.lo cauchy.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c cauchy.c -fPIC -DPIC -o .libs/cauchy.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o cauchyinv.lo cauchyinv.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c cauchyinv.c -fPIC -DPIC -o .libs/cauchyinv.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o chisq.lo chisq.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c chisq.c -fPIC -DPIC -o .libs/chisq.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o chisqinv.lo chisqinv.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c chisqinv.c -fPIC -DPIC -o .libs/chisqinv.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o exponential.lo exponential.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c exponential.c -fPIC -DPIC -o .libs/exponential.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o exponentialinv.lo exponentialinv.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c exponentialinv.c -fPIC -DPIC -o .libs/exponentialinv.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o exppow.lo exppow.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c exppow.c -fPIC -DPIC -o .libs/exppow.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o fdist.lo fdist.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c fdist.c -fPIC -DPIC -o .libs/fdist.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o fdistinv.lo fdistinv.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c fdistinv.c -fPIC -DPIC -o .libs/fdistinv.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o flat.lo flat.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c flat.c -fPIC -DPIC -o .libs/flat.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o flatinv.lo flatinv.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c flatinv.c -fPIC -DPIC -o .libs/flatinv.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o gamma.lo gamma.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c gamma.c -fPIC -DPIC -o .libs/gamma.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o gammainv.lo gammainv.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c gammainv.c -fPIC -DPIC -o .libs/gammainv.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o gauss.lo gauss.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c gauss.c -fPIC -DPIC -o .libs/gauss.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o gaussinv.lo gaussinv.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c gaussinv.c -fPIC -DPIC -o .libs/gaussinv.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o gumbel1.lo gumbel1.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c gumbel1.c -fPIC -DPIC -o .libs/gumbel1.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o gumbel1inv.lo gumbel1inv.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c gumbel1inv.c -fPIC -DPIC -o .libs/gumbel1inv.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o gumbel2.lo gumbel2.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c gumbel2.c -fPIC -DPIC -o .libs/gumbel2.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o gumbel2inv.lo gumbel2inv.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c gumbel2inv.c -fPIC -DPIC -o .libs/gumbel2inv.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o laplace.lo laplace.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c laplace.c -fPIC -DPIC -o .libs/laplace.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o laplaceinv.lo laplaceinv.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c laplaceinv.c -fPIC -DPIC -o .libs/laplaceinv.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o logistic.lo logistic.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c logistic.c -fPIC -DPIC -o .libs/logistic.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o logisticinv.lo logisticinv.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c logisticinv.c -fPIC -DPIC -o .libs/logisticinv.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o lognormal.lo lognormal.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c lognormal.c -fPIC -DPIC -o .libs/lognormal.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o lognormalinv.lo lognormalinv.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c lognormalinv.c -fPIC -DPIC -o .libs/lognormalinv.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o pareto.lo pareto.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c pareto.c -fPIC -DPIC -o .libs/pareto.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o paretoinv.lo paretoinv.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c paretoinv.c -fPIC -DPIC -o .libs/paretoinv.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o rayleigh.lo rayleigh.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c rayleigh.c -fPIC -DPIC -o .libs/rayleigh.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o rayleighinv.lo rayleighinv.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c rayleighinv.c -fPIC -DPIC -o .libs/rayleighinv.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o tdist.lo tdist.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c tdist.c -fPIC -DPIC -o .libs/tdist.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o tdistinv.lo tdistinv.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c tdistinv.c -fPIC -DPIC -o .libs/tdistinv.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o weibull.lo weibull.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c weibull.c -fPIC -DPIC -o .libs/weibull.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o weibullinv.lo weibullinv.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c weibullinv.c -fPIC -DPIC -o .libs/weibullinv.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o binomial.lo binomial.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c binomial.c -fPIC -DPIC -o .libs/binomial.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o poisson.lo poisson.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c poisson.c -fPIC -DPIC -o .libs/poisson.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o geometric.lo geometric.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c geometric.c -fPIC -DPIC -o .libs/geometric.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o nbinomial.lo nbinomial.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c nbinomial.c -fPIC -DPIC -o .libs/nbinomial.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o pascal.lo pascal.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c pascal.c -fPIC -DPIC -o .libs/pascal.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o hypergeometric.lo hypergeometric.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c hypergeometric.c -fPIC -DPIC -o .libs/hypergeometric.o
/bin/bash ../libtool --tag=CC --mode=link gcc -std=gnu99 -g -O2 -Wall -L/usr/local/lib -o libgslcdf.la beta.lo betainv.lo cauchy.lo cauchyinv.lo chisq.lo chisqinv.lo exponential.lo exponentialinv.lo exppow.lo fdist.lo fdistinv.lo flat.lo flatinv.lo gamma.lo gammainv.lo gauss.lo gaussinv.lo gumbel1.lo gumbel1inv.lo gumbel2.lo gumbel2inv.lo laplace.lo laplaceinv.lo logistic.lo logisticinv.lo lognormal.lo lognormalinv.lo pareto.lo paretoinv.lo rayleigh.lo rayleighinv.lo tdist.lo tdistinv.lo weibull.lo weibullinv.lo binomial.lo poisson.lo geometric.lo nbinomial.lo pascal.lo hypergeometric.lo -lm
libtool: link: ar cru .libs/libgslcdf.a .libs/beta.o .libs/betainv.o .libs/cauchy.o .libs/cauchyinv.o .libs/chisq.o .libs/chisqinv.o .libs/exponential.o .libs/exponentialinv.o .libs/exppow.o .libs/fdist.o .libs/fdistinv.o .libs/flat.o .libs/flatinv.o .libs/gamma.o .libs/gammainv.o .libs/gauss.o .libs/gaussinv.o .libs/gumbel1.o .libs/gumbel1inv.o .libs/gumbel2.o .libs/gumbel2inv.o .libs/laplace.o .libs/laplaceinv.o .libs/logistic.o .libs/logisticinv.o .libs/lognormal.o .libs/lognormalinv.o .libs/pareto.o .libs/paretoinv.o .libs/rayleigh.o .libs/rayleighinv.o .libs/tdist.o .libs/tdistinv.o .libs/weibull.o .libs/weibullinv.o .libs/binomial.o .libs/poisson.o .libs/geometric.o .libs/nbinomial.o .libs/pascal.o .libs/hypergeometric.o
libtool: link: ranlib .libs/libgslcdf.a
libtool: link: ( cd ".libs" && rm -f "libgslcdf.la" && ln -s "../libgslcdf.la" "libgslcdf.la" )
make[2]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/cdf'
make[2]: Nothing to be done for `install-exec-am'.
test -z "/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/include/gsl" || /bin/mkdir -p "/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/include/gsl"
/usr/bin/install -c -m 644 gsl_cdf.h '/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/include/gsl'
make[2]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/cdf'
make[1]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/cdf'
Making install in cblas
make[1]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/cblas'
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o sasum.lo sasum.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c sasum.c -fPIC -DPIC -o .libs/sasum.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o saxpy.lo saxpy.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c saxpy.c -fPIC -DPIC -o .libs/saxpy.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o scasum.lo scasum.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c scasum.c -fPIC -DPIC -o .libs/scasum.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o scnrm2.lo scnrm2.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c scnrm2.c -fPIC -DPIC -o .libs/scnrm2.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o scopy.lo scopy.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c scopy.c -fPIC -DPIC -o .libs/scopy.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o sdot.lo sdot.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c sdot.c -fPIC -DPIC -o .libs/sdot.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o sdsdot.lo sdsdot.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c sdsdot.c -fPIC -DPIC -o .libs/sdsdot.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o sgbmv.lo sgbmv.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c sgbmv.c -fPIC -DPIC -o .libs/sgbmv.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o sgemm.lo sgemm.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c sgemm.c -fPIC -DPIC -o .libs/sgemm.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o sgemv.lo sgemv.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c sgemv.c -fPIC -DPIC -o .libs/sgemv.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o sger.lo sger.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c sger.c -fPIC -DPIC -o .libs/sger.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o snrm2.lo snrm2.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c snrm2.c -fPIC -DPIC -o .libs/snrm2.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o srot.lo srot.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c srot.c -fPIC -DPIC -o .libs/srot.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o srotg.lo srotg.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c srotg.c -fPIC -DPIC -o .libs/srotg.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o srotm.lo srotm.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c srotm.c -fPIC -DPIC -o .libs/srotm.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o srotmg.lo srotmg.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c srotmg.c -fPIC -DPIC -o .libs/srotmg.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o ssbmv.lo ssbmv.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ssbmv.c -fPIC -DPIC -o .libs/ssbmv.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o sscal.lo sscal.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c sscal.c -fPIC -DPIC -o .libs/sscal.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o sspmv.lo sspmv.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c sspmv.c -fPIC -DPIC -o .libs/sspmv.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o sspr.lo sspr.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c sspr.c -fPIC -DPIC -o .libs/sspr.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o sspr2.lo sspr2.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c sspr2.c -fPIC -DPIC -o .libs/sspr2.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o sswap.lo sswap.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c sswap.c -fPIC -DPIC -o .libs/sswap.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o ssymm.lo ssymm.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ssymm.c -fPIC -DPIC -o .libs/ssymm.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o ssymv.lo ssymv.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ssymv.c -fPIC -DPIC -o .libs/ssymv.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o ssyr.lo ssyr.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ssyr.c -fPIC -DPIC -o .libs/ssyr.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o ssyr2.lo ssyr2.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ssyr2.c -fPIC -DPIC -o .libs/ssyr2.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o ssyr2k.lo ssyr2k.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ssyr2k.c -fPIC -DPIC -o .libs/ssyr2k.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o ssyrk.lo ssyrk.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ssyrk.c -fPIC -DPIC -o .libs/ssyrk.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o stbmv.lo stbmv.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c stbmv.c -fPIC -DPIC -o .libs/stbmv.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o stbsv.lo stbsv.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c stbsv.c -fPIC -DPIC -o .libs/stbsv.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o stpmv.lo stpmv.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c stpmv.c -fPIC -DPIC -o .libs/stpmv.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o stpsv.lo stpsv.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c stpsv.c -fPIC -DPIC -o .libs/stpsv.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o strmm.lo strmm.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c strmm.c -fPIC -DPIC -o .libs/strmm.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o strmv.lo strmv.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c strmv.c -fPIC -DPIC -o .libs/strmv.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o strsm.lo strsm.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c strsm.c -fPIC -DPIC -o .libs/strsm.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o strsv.lo strsv.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c strsv.c -fPIC -DPIC -o .libs/strsv.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o dasum.lo dasum.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c dasum.c -fPIC -DPIC -o .libs/dasum.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o daxpy.lo daxpy.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c daxpy.c -fPIC -DPIC -o .libs/daxpy.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o dcopy.lo dcopy.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c dcopy.c -fPIC -DPIC -o .libs/dcopy.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o ddot.lo ddot.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ddot.c -fPIC -DPIC -o .libs/ddot.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o dgbmv.lo dgbmv.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c dgbmv.c -fPIC -DPIC -o .libs/dgbmv.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o dgemm.lo dgemm.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c dgemm.c -fPIC -DPIC -o .libs/dgemm.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o dgemv.lo dgemv.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c dgemv.c -fPIC -DPIC -o .libs/dgemv.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o dger.lo dger.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c dger.c -fPIC -DPIC -o .libs/dger.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o dnrm2.lo dnrm2.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c dnrm2.c -fPIC -DPIC -o .libs/dnrm2.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o drot.lo drot.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c drot.c -fPIC -DPIC -o .libs/drot.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o drotg.lo drotg.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c drotg.c -fPIC -DPIC -o .libs/drotg.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o drotm.lo drotm.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c drotm.c -fPIC -DPIC -o .libs/drotm.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o drotmg.lo drotmg.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c drotmg.c -fPIC -DPIC -o .libs/drotmg.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o dsbmv.lo dsbmv.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c dsbmv.c -fPIC -DPIC -o .libs/dsbmv.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o dscal.lo dscal.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c dscal.c -fPIC -DPIC -o .libs/dscal.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o dsdot.lo dsdot.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c dsdot.c -fPIC -DPIC -o .libs/dsdot.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o dspmv.lo dspmv.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c dspmv.c -fPIC -DPIC -o .libs/dspmv.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o dspr.lo dspr.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c dspr.c -fPIC -DPIC -o .libs/dspr.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o dspr2.lo dspr2.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c dspr2.c -fPIC -DPIC -o .libs/dspr2.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o dswap.lo dswap.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c dswap.c -fPIC -DPIC -o .libs/dswap.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o dsymm.lo dsymm.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c dsymm.c -fPIC -DPIC -o .libs/dsymm.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o dsymv.lo dsymv.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c dsymv.c -fPIC -DPIC -o .libs/dsymv.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o dsyr.lo dsyr.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c dsyr.c -fPIC -DPIC -o .libs/dsyr.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o dsyr2.lo dsyr2.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c dsyr2.c -fPIC -DPIC -o .libs/dsyr2.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o dsyr2k.lo dsyr2k.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c dsyr2k.c -fPIC -DPIC -o .libs/dsyr2k.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o dsyrk.lo dsyrk.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c dsyrk.c -fPIC -DPIC -o .libs/dsyrk.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o dtbmv.lo dtbmv.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c dtbmv.c -fPIC -DPIC -o .libs/dtbmv.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o dtbsv.lo dtbsv.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c dtbsv.c -fPIC -DPIC -o .libs/dtbsv.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o dtpmv.lo dtpmv.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c dtpmv.c -fPIC -DPIC -o .libs/dtpmv.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o dtpsv.lo dtpsv.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c dtpsv.c -fPIC -DPIC -o .libs/dtpsv.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o dtrmm.lo dtrmm.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c dtrmm.c -fPIC -DPIC -o .libs/dtrmm.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o dtrmv.lo dtrmv.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c dtrmv.c -fPIC -DPIC -o .libs/dtrmv.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o dtrsm.lo dtrsm.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c dtrsm.c -fPIC -DPIC -o .libs/dtrsm.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o dtrsv.lo dtrsv.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c dtrsv.c -fPIC -DPIC -o .libs/dtrsv.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o dzasum.lo dzasum.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c dzasum.c -fPIC -DPIC -o .libs/dzasum.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o dznrm2.lo dznrm2.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c dznrm2.c -fPIC -DPIC -o .libs/dznrm2.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o caxpy.lo caxpy.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c caxpy.c -fPIC -DPIC -o .libs/caxpy.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o ccopy.lo ccopy.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ccopy.c -fPIC -DPIC -o .libs/ccopy.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o cdotc_sub.lo cdotc_sub.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c cdotc_sub.c -fPIC -DPIC -o .libs/cdotc_sub.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o cdotu_sub.lo cdotu_sub.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c cdotu_sub.c -fPIC -DPIC -o .libs/cdotu_sub.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c cgbmv.c -fPIC -DPIC -o .libs/cgbmv.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c cgemm.c -fPIC -DPIC -o .libs/cgemm.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c cgemv.c -fPIC -DPIC -o .libs/cgemv.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c cgerc.c -fPIC -DPIC -o .libs/cgerc.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c cgeru.c -fPIC -DPIC -o .libs/cgeru.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c chbmv.c -fPIC -DPIC -o .libs/chbmv.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c chemm.c -fPIC -DPIC -o .libs/chemm.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c chemv.c -fPIC -DPIC -o .libs/chemv.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o cher.lo cher.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c cher.c -fPIC -DPIC -o .libs/cher.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c cher2.c -fPIC -DPIC -o .libs/cher2.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c cher2k.c -fPIC -DPIC -o .libs/cher2k.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c cherk.c -fPIC -DPIC -o .libs/cherk.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c chpmv.c -fPIC -DPIC -o .libs/chpmv.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c chpr.c -fPIC -DPIC -o .libs/chpr.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c chpr2.c -fPIC -DPIC -o .libs/chpr2.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c cscal.c -fPIC -DPIC -o .libs/cscal.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c csscal.c -fPIC -DPIC -o .libs/csscal.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c cswap.c -fPIC -DPIC -o .libs/cswap.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c csymm.c -fPIC -DPIC -o .libs/csymm.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c csyr2k.c -fPIC -DPIC -o .libs/csyr2k.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c csyrk.c -fPIC -DPIC -o .libs/csyrk.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ctbmv.c -fPIC -DPIC -o .libs/ctbmv.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ctbsv.c -fPIC -DPIC -o .libs/ctbsv.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ctpmv.c -fPIC -DPIC -o .libs/ctpmv.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ctpsv.c -fPIC -DPIC -o .libs/ctpsv.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ctrmm.c -fPIC -DPIC -o .libs/ctrmm.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ctrmv.c -fPIC -DPIC -o .libs/ctrmv.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ctrsm.c -fPIC -DPIC -o .libs/ctrsm.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ctrsv.c -fPIC -DPIC -o .libs/ctrsv.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c zaxpy.c -fPIC -DPIC -o .libs/zaxpy.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c zcopy.c -fPIC -DPIC -o .libs/zcopy.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o zdotc_sub.lo zdotc_sub.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c zdotc_sub.c -fPIC -DPIC -o .libs/zdotc_sub.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c zdotu_sub.c -fPIC -DPIC -o .libs/zdotu_sub.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c zdscal.c -fPIC -DPIC -o .libs/zdscal.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c zgbmv.c -fPIC -DPIC -o .libs/zgbmv.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c zgemm.c -fPIC -DPIC -o .libs/zgemm.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c zgemv.c -fPIC -DPIC -o .libs/zgemv.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c zgerc.c -fPIC -DPIC -o .libs/zgerc.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c zgeru.c -fPIC -DPIC -o .libs/zgeru.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c zhbmv.c -fPIC -DPIC -o .libs/zhbmv.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c zhemm.c -fPIC -DPIC -o .libs/zhemm.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c zhemv.c -fPIC -DPIC -o .libs/zhemv.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c zher.c -fPIC -DPIC -o .libs/zher.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c zher2.c -fPIC -DPIC -o .libs/zher2.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c zher2k.c -fPIC -DPIC -o .libs/zher2k.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c zherk.c -fPIC -DPIC -o .libs/zherk.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c zhpmv.c -fPIC -DPIC -o .libs/zhpmv.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c zhpr.c -fPIC -DPIC -o .libs/zhpr.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c zhpr2.c -fPIC -DPIC -o .libs/zhpr2.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c zscal.c -fPIC -DPIC -o .libs/zscal.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o zswap.lo zswap.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c zswap.c -fPIC -DPIC -o .libs/zswap.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c zsymm.c -fPIC -DPIC -o .libs/zsymm.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c zsyr2k.c -fPIC -DPIC -o .libs/zsyr2k.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c zsyrk.c -fPIC -DPIC -o .libs/zsyrk.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ztbmv.c -fPIC -DPIC -o .libs/ztbmv.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ztbsv.c -fPIC -DPIC -o .libs/ztbsv.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ztpmv.c -fPIC -DPIC -o .libs/ztpmv.o
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libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ztpsv.c -fPIC -DPIC -o .libs/ztpsv.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o ztrmm.lo ztrmm.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ztrmm.c -fPIC -DPIC -o .libs/ztrmm.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o ztrmv.lo ztrmv.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ztrmv.c -fPIC -DPIC -o .libs/ztrmv.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o ztrsm.lo ztrsm.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ztrsm.c -fPIC -DPIC -o .libs/ztrsm.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o ztrsv.lo ztrsv.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ztrsv.c -fPIC -DPIC -o .libs/ztrsv.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o icamax.lo icamax.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c icamax.c -fPIC -DPIC -o .libs/icamax.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o idamax.lo idamax.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c idamax.c -fPIC -DPIC -o .libs/idamax.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o isamax.lo isamax.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c isamax.c -fPIC -DPIC -o .libs/isamax.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o izamax.lo izamax.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c izamax.c -fPIC -DPIC -o .libs/izamax.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o xerbla.lo xerbla.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c xerbla.c -fPIC -DPIC -o .libs/xerbla.o
/bin/bash ../libtool --tag=CC --mode=link gcc -std=gnu99 -g -O2 -Wall -version-info 0:0:0 -L/usr/local/lib -o libgslcblas.la -rpath /home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/lib sasum.lo saxpy.lo scasum.lo scnrm2.lo scopy.lo sdot.lo sdsdot.lo sgbmv.lo sgemm.lo sgemv.lo sger.lo snrm2.lo srot.lo srotg.lo srotm.lo srotmg.lo ssbmv.lo sscal.lo sspmv.lo sspr.lo sspr2.lo sswap.lo ssymm.lo ssymv.lo ssyr.lo ssyr2.lo ssyr2k.lo ssyrk.lo stbmv.lo stbsv.lo stpmv.lo stpsv.lo strmm.lo strmv.lo strsm.lo strsv.lo dasum.lo daxpy.lo dcopy.lo ddot.lo dgbmv.lo dgemm.lo dgemv.lo dger.lo dnrm2.lo drot.lo drotg.lo drotm.lo drotmg.lo dsbmv.lo dscal.lo dsdot.lo dspmv.lo dspr.lo dspr2.lo dswap.lo dsymm.lo dsymv.lo dsyr.lo dsyr2.lo dsyr2k.lo dsyrk.lo dtbmv.lo dtbsv.lo dtpmv.lo dtpsv.lo dtrmm.lo dtrmv.lo dtrsm.lo dtrsv.lo dzasum.lo dznrm2.lo caxpy.lo ccopy.lo cdotc_sub.lo cdotu_sub.lo cgbmv.lo cgemm.lo cgemv.lo cgerc.lo cgeru.lo chbmv.lo chemm.lo chemv.lo cher.lo cher2.lo cher2k.lo cherk.lo chpmv.lo chpr.lo chpr2.lo cscal.lo csscal.lo cswap.lo csymm.lo csyr2k.lo csyrk.lo ctbmv.lo ctbsv.lo ctpmv.lo ctpsv.lo ctrmm.lo ctrmv.lo ctrsm.lo ctrsv.lo zaxpy.lo zcopy.lo zdotc_sub.lo zdotu_sub.lo zdscal.lo zgbmv.lo zgemm.lo zgemv.lo zgerc.lo zgeru.lo zhbmv.lo zhemm.lo zhemv.lo zher.lo zher2.lo zher2k.lo zherk.lo zhpmv.lo zhpr.lo zhpr2.lo zscal.lo zswap.lo zsymm.lo zsyr2k.lo zsyrk.lo ztbmv.lo ztbsv.lo ztpmv.lo ztpsv.lo ztrmm.lo ztrmv.lo ztrsm.lo ztrsv.lo icamax.lo idamax.lo isamax.lo izamax.lo xerbla.lo -lm
libtool: link: gcc -std=gnu99 -shared .libs/sasum.o .libs/saxpy.o .libs/scasum.o .libs/scnrm2.o .libs/scopy.o .libs/sdot.o .libs/sdsdot.o .libs/sgbmv.o .libs/sgemm.o .libs/sgemv.o .libs/sger.o .libs/snrm2.o .libs/srot.o .libs/srotg.o .libs/srotm.o .libs/srotmg.o .libs/ssbmv.o .libs/sscal.o .libs/sspmv.o .libs/sspr.o .libs/sspr2.o .libs/sswap.o .libs/ssymm.o .libs/ssymv.o .libs/ssyr.o .libs/ssyr2.o .libs/ssyr2k.o .libs/ssyrk.o .libs/stbmv.o .libs/stbsv.o .libs/stpmv.o .libs/stpsv.o .libs/strmm.o .libs/strmv.o .libs/strsm.o .libs/strsv.o .libs/dasum.o .libs/daxpy.o .libs/dcopy.o .libs/ddot.o .libs/dgbmv.o .libs/dgemm.o .libs/dgemv.o .libs/dger.o .libs/dnrm2.o .libs/drot.o .libs/drotg.o .libs/drotm.o .libs/drotmg.o .libs/dsbmv.o .libs/dscal.o .libs/dsdot.o .libs/dspmv.o .libs/dspr.o .libs/dspr2.o .libs/dswap.o .libs/dsymm.o .libs/dsymv.o .libs/dsyr.o .libs/dsyr2.o .libs/dsyr2k.o .libs/dsyrk.o .libs/dtbmv.o .libs/dtbsv.o .libs/dtpmv.o .libs/dtpsv.o .libs/dtrmm.o .libs/dtrmv.o .libs/dtrsm.o .libs/dtrsv.o .libs/dzasum.o .libs/dznrm2.o .libs/caxpy.o .libs/ccopy.o .libs/cdotc_sub.o .libs/cdotu_sub.o .libs/cgbmv.o .libs/cgemm.o .libs/cgemv.o .libs/cgerc.o .libs/cgeru.o .libs/chbmv.o .libs/chemm.o .libs/chemv.o .libs/cher.o .libs/cher2.o .libs/cher2k.o .libs/cherk.o .libs/chpmv.o .libs/chpr.o .libs/chpr2.o .libs/cscal.o .libs/csscal.o .libs/cswap.o .libs/csymm.o .libs/csyr2k.o .libs/csyrk.o .libs/ctbmv.o .libs/ctbsv.o .libs/ctpmv.o .libs/ctpsv.o .libs/ctrmm.o .libs/ctrmv.o .libs/ctrsm.o .libs/ctrsv.o .libs/zaxpy.o .libs/zcopy.o .libs/zdotc_sub.o .libs/zdotu_sub.o .libs/zdscal.o .libs/zgbmv.o .libs/zgemm.o .libs/zgemv.o .libs/zgerc.o .libs/zgeru.o .libs/zhbmv.o .libs/zhemm.o .libs/zhemv.o .libs/zher.o .libs/zher2.o .libs/zher2k.o .libs/zherk.o .libs/zhpmv.o .libs/zhpr.o .libs/zhpr2.o .libs/zscal.o .libs/zswap.o .libs/zsymm.o .libs/zsyr2k.o .libs/zsyrk.o .libs/ztbmv.o .libs/ztbsv.o .libs/ztpmv.o .libs/ztpsv.o .libs/ztrmm.o .libs/ztrmv.o .libs/ztrsm.o .libs/ztrsv.o .libs/icamax.o .libs/idamax.o .libs/isamax.o .libs/izamax.o .libs/xerbla.o -L/usr/local/lib -lm -Wl,-soname -Wl,libgslcblas.so.0 -o .libs/libgslcblas.so.0.0.0
libtool: link: (cd ".libs" && rm -f "libgslcblas.so.0" && ln -s "libgslcblas.so.0.0.0" "libgslcblas.so.0")
libtool: link: (cd ".libs" && rm -f "libgslcblas.so" && ln -s "libgslcblas.so.0.0.0" "libgslcblas.so")
libtool: link: ( cd ".libs" && rm -f "libgslcblas.la" && ln -s "../libgslcblas.la" "libgslcblas.la" )
make[2]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/cblas'
test -z "/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/lib" || /bin/mkdir -p "/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/lib"
/bin/bash ../libtool --mode=install /usr/bin/install -c libgslcblas.la '/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/lib'
libtool: install: /usr/bin/install -c .libs/libgslcblas.so.0.0.0 /home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/lib/libgslcblas.so.0.0.0
libtool: install: (cd /home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/lib && { ln -s -f libgslcblas.so.0.0.0 libgslcblas.so.0 || { rm -f libgslcblas.so.0 && ln -s libgslcblas.so.0.0.0 libgslcblas.so.0; }; })
libtool: install: (cd /home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/lib && { ln -s -f libgslcblas.so.0.0.0 libgslcblas.so || { rm -f libgslcblas.so && ln -s libgslcblas.so.0.0.0 libgslcblas.so; }; })
libtool: install: /usr/bin/install -c .libs/libgslcblas.lai /home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/lib/libgslcblas.la
libtool: finish: PATH="/opt/moab/bin:/app/bin:/usr/local/bin:/usr/bin:/bin:/usr/local/bin:/usr/local/root/bin:/usr/local/variant_effect_predictor:/sbin" ldconfig -n /home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/lib
----------------------------------------------------------------------
Libraries have been installed in:
/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/lib
If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
- add LIBDIR to the `LD_LIBRARY_PATH' environment variable
during execution
- add LIBDIR to the `LD_RUN_PATH' environment variable
during linking
- use the `-Wl,-rpath -Wl,LIBDIR' linker flag
- have your system administrator add LIBDIR to `/etc/ld.so.conf'
See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
test -z "/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/include/gsl" || /bin/mkdir -p "/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/include/gsl"
/usr/bin/install -c -m 644 gsl_cblas.h '/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/include/gsl'
make[2]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/cblas'
make[1]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/cblas'
Making install in specfunc
make[1]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/specfunc'
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o airy.lo airy.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c airy.c -fPIC -DPIC -o .libs/airy.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o airy_der.lo airy_der.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c airy_der.c -fPIC -DPIC -o .libs/airy_der.o
airy_der.c: In function 'airy_deriv_mod_phase':
airy_der.c:595:10: warning: variable 'x32' set but not used [-Wunused-but-set-variable]
double x32;
^
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o airy_zero.lo airy_zero.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c airy_zero.c -fPIC -DPIC -o .libs/airy_zero.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o atanint.lo atanint.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c atanint.c -fPIC -DPIC -o .libs/atanint.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o bessel.lo bessel.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c bessel.c -fPIC -DPIC -o .libs/bessel.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o bessel_I0.lo bessel_I0.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c bessel_I0.c -fPIC -DPIC -o .libs/bessel_I0.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o bessel_I1.lo bessel_I1.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c bessel_I1.c -fPIC -DPIC -o .libs/bessel_I1.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o bessel_In.lo bessel_In.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c bessel_In.c -fPIC -DPIC -o .libs/bessel_In.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o bessel_Inu.lo bessel_Inu.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c bessel_Inu.c -fPIC -DPIC -o .libs/bessel_Inu.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o bessel_J0.lo bessel_J0.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c bessel_J0.c -fPIC -DPIC -o .libs/bessel_J0.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o bessel_J1.lo bessel_J1.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c bessel_J1.c -fPIC -DPIC -o .libs/bessel_J1.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o bessel_Jn.lo bessel_Jn.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c bessel_Jn.c -fPIC -DPIC -o .libs/bessel_Jn.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o bessel_Jnu.lo bessel_Jnu.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c bessel_Jnu.c -fPIC -DPIC -o .libs/bessel_Jnu.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o bessel_K0.lo bessel_K0.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c bessel_K0.c -fPIC -DPIC -o .libs/bessel_K0.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o bessel_K1.lo bessel_K1.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c bessel_K1.c -fPIC -DPIC -o .libs/bessel_K1.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o bessel_Kn.lo bessel_Kn.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c bessel_Kn.c -fPIC -DPIC -o .libs/bessel_Kn.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o bessel_Knu.lo bessel_Knu.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c bessel_Knu.c -fPIC -DPIC -o .libs/bessel_Knu.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o bessel_Y0.lo bessel_Y0.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c bessel_Y0.c -fPIC -DPIC -o .libs/bessel_Y0.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o bessel_Y1.lo bessel_Y1.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c bessel_Y1.c -fPIC -DPIC -o .libs/bessel_Y1.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o bessel_Yn.lo bessel_Yn.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c bessel_Yn.c -fPIC -DPIC -o .libs/bessel_Yn.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o bessel_Ynu.lo bessel_Ynu.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c bessel_Ynu.c -fPIC -DPIC -o .libs/bessel_Ynu.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o bessel_amp_phase.lo bessel_amp_phase.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c bessel_amp_phase.c -fPIC -DPIC -o .libs/bessel_amp_phase.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o bessel_i.lo bessel_i.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c bessel_i.c -fPIC -DPIC -o .libs/bessel_i.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o bessel_j.lo bessel_j.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c bessel_j.c -fPIC -DPIC -o .libs/bessel_j.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o bessel_k.lo bessel_k.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c bessel_k.c -fPIC -DPIC -o .libs/bessel_k.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o bessel_olver.lo bessel_olver.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c bessel_olver.c -fPIC -DPIC -o .libs/bessel_olver.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o bessel_temme.lo bessel_temme.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c bessel_temme.c -fPIC -DPIC -o .libs/bessel_temme.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o bessel_y.lo bessel_y.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c bessel_y.c -fPIC -DPIC -o .libs/bessel_y.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o bessel_zero.lo bessel_zero.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c bessel_zero.c -fPIC -DPIC -o .libs/bessel_zero.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o bessel_sequence.lo bessel_sequence.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c bessel_sequence.c -fPIC -DPIC -o .libs/bessel_sequence.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o beta.lo beta.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c beta.c -fPIC -DPIC -o .libs/beta.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o beta_inc.lo beta_inc.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c beta_inc.c -fPIC -DPIC -o .libs/beta_inc.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o clausen.lo clausen.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c clausen.c -fPIC -DPIC -o .libs/clausen.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o coulomb.lo coulomb.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c coulomb.c -fPIC -DPIC -o .libs/coulomb.o
coulomb.c: In function 'gsl_sf_coulomb_wave_FG_e':
coulomb.c:1061:9: warning: variable 'stat_CF1_lam_G' set but not used [-Wunused-but-set-variable]
int stat_CF1_lam_G;
^
coulomb.c:1131:23: warning: variable 'Fp_lam_min' set but not used [-Wunused-but-set-variable]
double F_lam_min, Fp_lam_min;
^
coulomb.c:994:15: warning: 'G_lam_G' may be used uninitialized in this function [-Wmaybe-uninitialized]
G->val = G_lam_G;
^
coulomb.c:996:15: warning: 'Gp_lam_G' may be used uninitialized in this function [-Wmaybe-uninitialized]
Gp->val = Gp_lam_G;
^
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o coupling.lo coupling.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c coupling.c -fPIC -DPIC -o .libs/coupling.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o coulomb_bound.lo coulomb_bound.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c coulomb_bound.c -fPIC -DPIC -o .libs/coulomb_bound.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o dawson.lo dawson.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c dawson.c -fPIC -DPIC -o .libs/dawson.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o debye.lo debye.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c debye.c -fPIC -DPIC -o .libs/debye.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o dilog.lo dilog.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c dilog.c -fPIC -DPIC -o .libs/dilog.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o elementary.lo elementary.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c elementary.c -fPIC -DPIC -o .libs/elementary.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o ellint.lo ellint.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ellint.c -fPIC -DPIC -o .libs/ellint.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o elljac.lo elljac.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c elljac.c -fPIC -DPIC -o .libs/elljac.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o erfc.lo erfc.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c erfc.c -fPIC -DPIC -o .libs/erfc.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o exp.lo exp.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c exp.c -fPIC -DPIC -o .libs/exp.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o expint.lo expint.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c expint.c -fPIC -DPIC -o .libs/expint.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o expint3.lo expint3.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c expint3.c -fPIC -DPIC -o .libs/expint3.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o fermi_dirac.lo fermi_dirac.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c fermi_dirac.c -fPIC -DPIC -o .libs/fermi_dirac.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o gegenbauer.lo gegenbauer.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c gegenbauer.c -fPIC -DPIC -o .libs/gegenbauer.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o gamma.lo gamma.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c gamma.c -fPIC -DPIC -o .libs/gamma.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o gamma_inc.lo gamma_inc.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c gamma_inc.c -fPIC -DPIC -o .libs/gamma_inc.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o hyperg_0F1.lo hyperg_0F1.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c hyperg_0F1.c -fPIC -DPIC -o .libs/hyperg_0F1.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o hyperg_2F0.lo hyperg_2F0.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c hyperg_2F0.c -fPIC -DPIC -o .libs/hyperg_2F0.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o hyperg_1F1.lo hyperg_1F1.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c hyperg_1F1.c -fPIC -DPIC -o .libs/hyperg_1F1.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o hyperg_2F1.lo hyperg_2F1.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c hyperg_2F1.c -fPIC -DPIC -o .libs/hyperg_2F1.o
hyperg_2F1.c: In function 'hyperg_2F1_reflect':
hyperg_2F1.c:373:9: warning: variable 'stat_c' set but not used [-Wunused-but-set-variable]
int stat_c;
^
hyperg_2F1.c:523:20: warning: variable 'status_F2' set but not used [-Wunused-but-set-variable]
int status_F1, status_F2;
^
hyperg_2F1.c:523:9: warning: variable 'status_F1' set but not used [-Wunused-but-set-variable]
int status_F1, status_F2;
^
hyperg_2F1.c: In function 'gsl_sf_hyperg_2F1_e':
hyperg_2F1.c:721:12: warning: variable 'ap' set but not used [-Wunused-but-set-variable]
double ap, bp;
^
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o hyperg_U.lo hyperg_U.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c hyperg_U.c -fPIC -DPIC -o .libs/hyperg_U.o
hyperg_U.c: In function 'hyperg_U_finite_sum':
hyperg_U.c:301:11: warning: variable 'stat_gamr' set but not used [-Wunused-but-set-variable]
int stat_gamr;
^
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o hyperg.lo hyperg.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c hyperg.c -fPIC -DPIC -o .libs/hyperg.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o laguerre.lo laguerre.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c laguerre.c -fPIC -DPIC -o .libs/laguerre.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o lambert.lo lambert.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c lambert.c -fPIC -DPIC -o .libs/lambert.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o legendre_H3d.lo legendre_H3d.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c legendre_H3d.c -fPIC -DPIC -o .libs/legendre_H3d.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o legendre_Qn.lo legendre_Qn.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c legendre_Qn.c -fPIC -DPIC -o .libs/legendre_Qn.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o legendre_con.lo legendre_con.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c legendre_con.c -fPIC -DPIC -o .libs/legendre_con.o
legendre_con.c: In function 'gsl_sf_conicalP_1_e':
legendre_con.c:875:17: warning: variable 'stat_E' set but not used [-Wunused-but-set-variable]
int stat_K, stat_E;
^
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o legendre_poly.lo legendre_poly.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c legendre_poly.c -fPIC -DPIC -o .libs/legendre_poly.o
legendre_poly.c: In function 'gsl_sf_legendre_sphPlm_e':
legendre_poly.c:588:32: warning: 'y_ell_err' may be used uninitialized in this function [-Wmaybe-uninitialized]
result->err = y_ell_err + (0.5*(l-m) + 1.0) * GSL_DBL_EPSILON * fabs(y_ell);
^
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o log.lo log.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c log.c -fPIC -DPIC -o .libs/log.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o mathieu_angfunc.lo mathieu_angfunc.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c mathieu_angfunc.c -fPIC -DPIC -o .libs/mathieu_angfunc.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o mathieu_charv.lo mathieu_charv.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c mathieu_charv.c -fPIC -DPIC -o .libs/mathieu_charv.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o mathieu_coeff.lo mathieu_coeff.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c mathieu_coeff.c -fPIC -DPIC -o .libs/mathieu_coeff.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o mathieu_radfunc.lo mathieu_radfunc.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c mathieu_radfunc.c -fPIC -DPIC -o .libs/mathieu_radfunc.o
mathieu_radfunc.c: In function 'gsl_sf_mathieu_Mc':
mathieu_radfunc.c:33:21: warning: variable 'mm' set but not used [-Wunused-but-set-variable]
int even_odd, kk, mm, status;
^
mathieu_radfunc.c: In function 'gsl_sf_mathieu_Ms':
mathieu_radfunc.c:139:21: warning: variable 'mm' set but not used [-Wunused-but-set-variable]
int even_odd, kk, mm, status;
^
mathieu_radfunc.c: In function 'gsl_sf_mathieu_Mc_array':
mathieu_radfunc.c:250:32: warning: variable 'mm' set but not used [-Wunused-but-set-variable]
int even_odd, order, ii, kk, mm, status;
^
mathieu_radfunc.c: In function 'gsl_sf_mathieu_Ms_array':
mathieu_radfunc.c:356:32: warning: variable 'mm' set but not used [-Wunused-but-set-variable]
int even_odd, order, ii, kk, mm, status;
^
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o mathieu_workspace.lo mathieu_workspace.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c mathieu_workspace.c -fPIC -DPIC -o .libs/mathieu_workspace.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o poch.lo poch.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c poch.c -fPIC -DPIC -o .libs/poch.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o pow_int.lo pow_int.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c pow_int.c -fPIC -DPIC -o .libs/pow_int.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o psi.lo psi.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c psi.c -fPIC -DPIC -o .libs/psi.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o result.lo result.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c result.c -fPIC -DPIC -o .libs/result.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o shint.lo shint.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c shint.c -fPIC -DPIC -o .libs/shint.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o sinint.lo sinint.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c sinint.c -fPIC -DPIC -o .libs/sinint.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o synchrotron.lo synchrotron.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c synchrotron.c -fPIC -DPIC -o .libs/synchrotron.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o transport.lo transport.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c transport.c -fPIC -DPIC -o .libs/transport.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o trig.lo trig.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c trig.c -fPIC -DPIC -o .libs/trig.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o zeta.lo zeta.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c zeta.c -fPIC -DPIC -o .libs/zeta.o
/bin/bash ../libtool --tag=CC --mode=link gcc -std=gnu99 -g -O2 -Wall -L/usr/local/lib -o libgslspecfunc.la airy.lo airy_der.lo airy_zero.lo atanint.lo bessel.lo bessel_I0.lo bessel_I1.lo bessel_In.lo bessel_Inu.lo bessel_J0.lo bessel_J1.lo bessel_Jn.lo bessel_Jnu.lo bessel_K0.lo bessel_K1.lo bessel_Kn.lo bessel_Knu.lo bessel_Y0.lo bessel_Y1.lo bessel_Yn.lo bessel_Ynu.lo bessel_amp_phase.lo bessel_i.lo bessel_j.lo bessel_k.lo bessel_olver.lo bessel_temme.lo bessel_y.lo bessel_zero.lo bessel_sequence.lo beta.lo beta_inc.lo clausen.lo coulomb.lo coupling.lo coulomb_bound.lo dawson.lo debye.lo dilog.lo elementary.lo ellint.lo elljac.lo erfc.lo exp.lo expint.lo expint3.lo fermi_dirac.lo gegenbauer.lo gamma.lo gamma_inc.lo hyperg_0F1.lo hyperg_2F0.lo hyperg_1F1.lo hyperg_2F1.lo hyperg_U.lo hyperg.lo laguerre.lo lambert.lo legendre_H3d.lo legendre_Qn.lo legendre_con.lo legendre_poly.lo log.lo mathieu_angfunc.lo mathieu_charv.lo mathieu_coeff.lo mathieu_radfunc.lo mathieu_workspace.lo poch.lo pow_int.lo psi.lo result.lo shint.lo sinint.lo synchrotron.lo transport.lo trig.lo zeta.lo -lm
libtool: link: ar cru .libs/libgslspecfunc.a .libs/airy.o .libs/airy_der.o .libs/airy_zero.o .libs/atanint.o .libs/bessel.o .libs/bessel_I0.o .libs/bessel_I1.o .libs/bessel_In.o .libs/bessel_Inu.o .libs/bessel_J0.o .libs/bessel_J1.o .libs/bessel_Jn.o .libs/bessel_Jnu.o .libs/bessel_K0.o .libs/bessel_K1.o .libs/bessel_Kn.o .libs/bessel_Knu.o .libs/bessel_Y0.o .libs/bessel_Y1.o .libs/bessel_Yn.o .libs/bessel_Ynu.o .libs/bessel_amp_phase.o .libs/bessel_i.o .libs/bessel_j.o .libs/bessel_k.o .libs/bessel_olver.o .libs/bessel_temme.o .libs/bessel_y.o .libs/bessel_zero.o .libs/bessel_sequence.o .libs/beta.o .libs/beta_inc.o .libs/clausen.o .libs/coulomb.o .libs/coupling.o .libs/coulomb_bound.o .libs/dawson.o .libs/debye.o .libs/dilog.o .libs/elementary.o .libs/ellint.o .libs/elljac.o .libs/erfc.o .libs/exp.o .libs/expint.o .libs/expint3.o .libs/fermi_dirac.o .libs/gegenbauer.o .libs/gamma.o .libs/gamma_inc.o .libs/hyperg_0F1.o .libs/hyperg_2F0.o .libs/hyperg_1F1.o .libs/hyperg_2F1.o .libs/hyperg_U.o .libs/hyperg.o .libs/laguerre.o .libs/lambert.o .libs/legendre_H3d.o .libs/legendre_Qn.o .libs/legendre_con.o .libs/legendre_poly.o .libs/log.o .libs/mathieu_angfunc.o .libs/mathieu_charv.o .libs/mathieu_coeff.o .libs/mathieu_radfunc.o .libs/mathieu_workspace.o .libs/poch.o .libs/pow_int.o .libs/psi.o .libs/result.o .libs/shint.o .libs/sinint.o .libs/synchrotron.o .libs/transport.o .libs/trig.o .libs/zeta.o
libtool: link: ranlib .libs/libgslspecfunc.a
libtool: link: ( cd ".libs" && rm -f "libgslspecfunc.la" && ln -s "../libgslspecfunc.la" "libgslspecfunc.la" )
make[2]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/specfunc'
make[2]: Nothing to be done for `install-exec-am'.
test -z "/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/include/gsl" || /bin/mkdir -p "/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/include/gsl"
/usr/bin/install -c -m 644 gsl_sf.h gsl_sf_airy.h gsl_sf_bessel.h gsl_sf_clausen.h gsl_sf_coulomb.h gsl_sf_coupling.h gsl_sf_dawson.h gsl_sf_debye.h gsl_sf_dilog.h gsl_sf_elementary.h gsl_sf_ellint.h gsl_sf_elljac.h gsl_sf_erf.h gsl_sf_exp.h gsl_sf_expint.h gsl_sf_fermi_dirac.h gsl_sf_gamma.h gsl_sf_gegenbauer.h gsl_sf_hyperg.h gsl_sf_laguerre.h gsl_sf_lambert.h gsl_sf_legendre.h gsl_sf_log.h gsl_sf_mathieu.h gsl_sf_pow_int.h gsl_sf_psi.h gsl_sf_result.h gsl_sf_synchrotron.h gsl_sf_transport.h gsl_sf_trig.h gsl_sf_zeta.h gsl_specfunc.h '/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/include/gsl'
make[2]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/specfunc'
make[1]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/specfunc'
Making install in linalg
make[1]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/linalg'
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o multiply.lo multiply.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c multiply.c -fPIC -DPIC -o .libs/multiply.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o exponential.lo exponential.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c exponential.c -fPIC -DPIC -o .libs/exponential.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o tridiag.lo tridiag.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c tridiag.c -fPIC -DPIC -o .libs/tridiag.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o lu.lo lu.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c lu.c -fPIC -DPIC -o .libs/lu.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o luc.lo luc.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c luc.c -fPIC -DPIC -o .libs/luc.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o hh.lo hh.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c hh.c -fPIC -DPIC -o .libs/hh.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o qr.lo qr.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c qr.c -fPIC -DPIC -o .libs/qr.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o qrpt.lo qrpt.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c qrpt.c -fPIC -DPIC -o .libs/qrpt.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o lq.lo lq.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c lq.c -fPIC -DPIC -o .libs/lq.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o ptlq.lo ptlq.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ptlq.c -fPIC -DPIC -o .libs/ptlq.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o svd.lo svd.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c svd.c -fPIC -DPIC -o .libs/svd.o
In file included from svd.c:31:0:
svdstep.c: In function 'qrstep':
svdstep.c:379:34: warning: variable 'bq' set but not used [-Wunused-but-set-variable]
double ak, bk, zk, ap, bp, aq, bq;
^
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o householder.lo householder.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c householder.c -fPIC -DPIC -o .libs/householder.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o householdercomplex.lo householdercomplex.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c householdercomplex.c -fPIC -DPIC -o .libs/householdercomplex.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o hessenberg.lo hessenberg.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c hessenberg.c -fPIC -DPIC -o .libs/hessenberg.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o hesstri.lo hesstri.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c hesstri.c -fPIC -DPIC -o .libs/hesstri.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o cholesky.lo cholesky.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c cholesky.c -fPIC -DPIC -o .libs/cholesky.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o choleskyc.lo choleskyc.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c choleskyc.c -fPIC -DPIC -o .libs/choleskyc.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o symmtd.lo symmtd.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c symmtd.c -fPIC -DPIC -o .libs/symmtd.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o hermtd.lo hermtd.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c hermtd.c -fPIC -DPIC -o .libs/hermtd.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o bidiag.lo bidiag.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c bidiag.c -fPIC -DPIC -o .libs/bidiag.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o balance.lo balance.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c balance.c -fPIC -DPIC -o .libs/balance.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o balancemat.lo balancemat.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c balancemat.c -fPIC -DPIC -o .libs/balancemat.o
/bin/bash ../libtool --tag=CC --mode=link gcc -std=gnu99 -g -O2 -Wall -L/usr/local/lib -o libgsllinalg.la multiply.lo exponential.lo tridiag.lo lu.lo luc.lo hh.lo qr.lo qrpt.lo lq.lo ptlq.lo svd.lo householder.lo householdercomplex.lo hessenberg.lo hesstri.lo cholesky.lo choleskyc.lo symmtd.lo hermtd.lo bidiag.lo balance.lo balancemat.lo -lm
libtool: link: ar cru .libs/libgsllinalg.a .libs/multiply.o .libs/exponential.o .libs/tridiag.o .libs/lu.o .libs/luc.o .libs/hh.o .libs/qr.o .libs/qrpt.o .libs/lq.o .libs/ptlq.o .libs/svd.o .libs/householder.o .libs/householdercomplex.o .libs/hessenberg.o .libs/hesstri.o .libs/cholesky.o .libs/choleskyc.o .libs/symmtd.o .libs/hermtd.o .libs/bidiag.o .libs/balance.o .libs/balancemat.o
libtool: link: ranlib .libs/libgsllinalg.a
libtool: link: ( cd ".libs" && rm -f "libgsllinalg.la" && ln -s "../libgsllinalg.la" "libgsllinalg.la" )
make[2]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/linalg'
make[2]: Nothing to be done for `install-exec-am'.
test -z "/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/include/gsl" || /bin/mkdir -p "/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/include/gsl"
/usr/bin/install -c -m 644 gsl_linalg.h '/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/include/gsl'
make[2]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/linalg'
make[1]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/linalg'
Making install in statistics
make[1]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/statistics'
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o mean.lo mean.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c mean.c -fPIC -DPIC -o .libs/mean.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o variance.lo variance.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c variance.c -fPIC -DPIC -o .libs/variance.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o absdev.lo absdev.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c absdev.c -fPIC -DPIC -o .libs/absdev.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o skew.lo skew.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c skew.c -fPIC -DPIC -o .libs/skew.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o kurtosis.lo kurtosis.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c kurtosis.c -fPIC -DPIC -o .libs/kurtosis.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o lag1.lo lag1.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c lag1.c -fPIC -DPIC -o .libs/lag1.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o p_variance.lo p_variance.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c p_variance.c -fPIC -DPIC -o .libs/p_variance.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o minmax.lo minmax.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c minmax.c -fPIC -DPIC -o .libs/minmax.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o ttest.lo ttest.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ttest.c -fPIC -DPIC -o .libs/ttest.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o median.lo median.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c median.c -fPIC -DPIC -o .libs/median.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o covariance.lo covariance.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c covariance.c -fPIC -DPIC -o .libs/covariance.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o quantiles.lo quantiles.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c quantiles.c -fPIC -DPIC -o .libs/quantiles.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o wmean.lo wmean.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c wmean.c -fPIC -DPIC -o .libs/wmean.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o wvariance.lo wvariance.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c wvariance.c -fPIC -DPIC -o .libs/wvariance.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o wabsdev.lo wabsdev.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c wabsdev.c -fPIC -DPIC -o .libs/wabsdev.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o wskew.lo wskew.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c wskew.c -fPIC -DPIC -o .libs/wskew.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o wkurtosis.lo wkurtosis.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c wkurtosis.c -fPIC -DPIC -o .libs/wkurtosis.o
/bin/bash ../libtool --tag=CC --mode=link gcc -std=gnu99 -g -O2 -Wall -L/usr/local/lib -o libgslstatistics.la mean.lo variance.lo absdev.lo skew.lo kurtosis.lo lag1.lo p_variance.lo minmax.lo ttest.lo median.lo covariance.lo quantiles.lo wmean.lo wvariance.lo wabsdev.lo wskew.lo wkurtosis.lo -lm
libtool: link: ar cru .libs/libgslstatistics.a .libs/mean.o .libs/variance.o .libs/absdev.o .libs/skew.o .libs/kurtosis.o .libs/lag1.o .libs/p_variance.o .libs/minmax.o .libs/ttest.o .libs/median.o .libs/covariance.o .libs/quantiles.o .libs/wmean.o .libs/wvariance.o .libs/wabsdev.o .libs/wskew.o .libs/wkurtosis.o
libtool: link: ranlib .libs/libgslstatistics.a
libtool: link: ( cd ".libs" && rm -f "libgslstatistics.la" && ln -s "../libgslstatistics.la" "libgslstatistics.la" )
make[2]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/statistics'
make[2]: Nothing to be done for `install-exec-am'.
test -z "/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/include/gsl" || /bin/mkdir -p "/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/include/gsl"
/usr/bin/install -c -m 644 gsl_statistics.h gsl_statistics_char.h gsl_statistics_double.h gsl_statistics_float.h gsl_statistics_int.h gsl_statistics_long.h gsl_statistics_long_double.h gsl_statistics_short.h gsl_statistics_uchar.h gsl_statistics_uint.h gsl_statistics_ulong.h gsl_statistics_ushort.h '/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/include/gsl'
make[2]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/statistics'
make[1]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/statistics'
Making install in blas
make[1]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/blas'
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o blas.lo blas.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c blas.c -fPIC -DPIC -o .libs/blas.o
/bin/bash ../libtool --tag=CC --mode=link gcc -std=gnu99 -g -O2 -Wall -L/usr/local/lib -o libgslblas.la blas.lo -lm
libtool: link: ar cru .libs/libgslblas.a .libs/blas.o
libtool: link: ranlib .libs/libgslblas.a
libtool: link: ( cd ".libs" && rm -f "libgslblas.la" && ln -s "../libgslblas.la" "libgslblas.la" )
make[2]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/blas'
make[2]: Nothing to be done for `install-exec-am'.
test -z "/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/include/gsl" || /bin/mkdir -p "/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/include/gsl"
/usr/bin/install -c -m 644 gsl_blas.h gsl_blas_types.h '/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/include/gsl'
make[2]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/blas'
make[1]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/blas'
Making install in roots
make[1]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/roots'
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o bisection.lo bisection.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c bisection.c -fPIC -DPIC -o .libs/bisection.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o brent.lo brent.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c brent.c -fPIC -DPIC -o .libs/brent.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o falsepos.lo falsepos.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c falsepos.c -fPIC -DPIC -o .libs/falsepos.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o newton.lo newton.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c newton.c -fPIC -DPIC -o .libs/newton.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o secant.lo secant.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c secant.c -fPIC -DPIC -o .libs/secant.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o steffenson.lo steffenson.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c steffenson.c -fPIC -DPIC -o .libs/steffenson.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o convergence.lo convergence.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c convergence.c -fPIC -DPIC -o .libs/convergence.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o fsolver.lo fsolver.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c fsolver.c -fPIC -DPIC -o .libs/fsolver.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o fdfsolver.lo fdfsolver.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c fdfsolver.c -fPIC -DPIC -o .libs/fdfsolver.o
/bin/bash ../libtool --tag=CC --mode=link gcc -std=gnu99 -g -O2 -Wall -L/usr/local/lib -o libgslroots.la bisection.lo brent.lo falsepos.lo newton.lo secant.lo steffenson.lo convergence.lo fsolver.lo fdfsolver.lo -lm
libtool: link: ar cru .libs/libgslroots.a .libs/bisection.o .libs/brent.o .libs/falsepos.o .libs/newton.o .libs/secant.o .libs/steffenson.o .libs/convergence.o .libs/fsolver.o .libs/fdfsolver.o
libtool: link: ranlib .libs/libgslroots.a
libtool: link: ( cd ".libs" && rm -f "libgslroots.la" && ln -s "../libgslroots.la" "libgslroots.la" )
make[2]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/roots'
make[2]: Nothing to be done for `install-exec-am'.
test -z "/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/include/gsl" || /bin/mkdir -p "/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/include/gsl"
/usr/bin/install -c -m 644 gsl_roots.h '/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/include/gsl'
make[2]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/roots'
make[1]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/roots'
Making install in err
make[1]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/err'
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include -g -O2 -Wall -c -o error.lo error.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include -g -O2 -Wall -c error.c -fPIC -DPIC -o .libs/error.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include -g -O2 -Wall -c -o stream.lo stream.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include -g -O2 -Wall -c stream.c -fPIC -DPIC -o .libs/stream.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include -g -O2 -Wall -c -o message.lo message.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include -g -O2 -Wall -c message.c -fPIC -DPIC -o .libs/message.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include -g -O2 -Wall -c -o strerror.lo strerror.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I/usr/local/include -g -O2 -Wall -c strerror.c -fPIC -DPIC -o .libs/strerror.o
/bin/bash ../libtool --tag=CC --mode=link gcc -std=gnu99 -g -O2 -Wall -L/usr/local/lib -o libgslerr.la error.lo stream.lo message.lo strerror.lo -lm
libtool: link: ar cru .libs/libgslerr.a .libs/error.o .libs/stream.o .libs/message.o .libs/strerror.o
libtool: link: ranlib .libs/libgslerr.a
libtool: link: ( cd ".libs" && rm -f "libgslerr.la" && ln -s "../libgslerr.la" "libgslerr.la" )
make[2]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/err'
make[2]: Nothing to be done for `install-exec-am'.
test -z "/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/include/gsl" || /bin/mkdir -p "/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/include/gsl"
/usr/bin/install -c -m 644 gsl_errno.h gsl_message.h '/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/include/gsl'
make[2]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/err'
make[1]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/err'
Making install in min
make[1]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/min'
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o fsolver.lo fsolver.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c fsolver.c -fPIC -DPIC -o .libs/fsolver.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o golden.lo golden.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c golden.c -fPIC -DPIC -o .libs/golden.o
golden.c: In function 'goldensection_init':
golden.c:49:27: warning: variable 'state' set but not used [-Wunused-but-set-variable]
goldensection_state_t * state = (goldensection_state_t *) vstate;
^
golden.c: In function 'goldensection_iterate':
golden.c:68:27: warning: variable 'state' set but not used [-Wunused-but-set-variable]
goldensection_state_t * state = (goldensection_state_t *) vstate;
^
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o brent.lo brent.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c brent.c -fPIC -DPIC -o .libs/brent.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o convergence.lo convergence.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c convergence.c -fPIC -DPIC -o .libs/convergence.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o bracketing.lo bracketing.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c bracketing.c -fPIC -DPIC -o .libs/bracketing.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o quad_golden.lo quad_golden.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c quad_golden.c -fPIC -DPIC -o .libs/quad_golden.o
/bin/bash ../libtool --tag=CC --mode=link gcc -std=gnu99 -g -O2 -Wall -L/usr/local/lib -o libgslmin.la fsolver.lo golden.lo brent.lo convergence.lo bracketing.lo quad_golden.lo -lm
libtool: link: ar cru .libs/libgslmin.a .libs/fsolver.o .libs/golden.o .libs/brent.o .libs/convergence.o .libs/bracketing.o .libs/quad_golden.o
libtool: link: ranlib .libs/libgslmin.a
libtool: link: ( cd ".libs" && rm -f "libgslmin.la" && ln -s "../libgslmin.la" "libgslmin.la" )
make[2]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/min'
make[2]: Nothing to be done for `install-exec-am'.
test -z "/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/include/gsl" || /bin/mkdir -p "/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/include/gsl"
/usr/bin/install -c -m 644 gsl_min.h '/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/include/gsl'
make[2]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/min'
make[1]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/min'
Making install in permutation
make[1]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/permutation'
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o init.lo init.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c init.c -fPIC -DPIC -o .libs/init.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o file.lo file.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c file.c -fPIC -DPIC -o .libs/file.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o permutation.lo permutation.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c permutation.c -fPIC -DPIC -o .libs/permutation.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o permute.lo permute.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c permute.c -fPIC -DPIC -o .libs/permute.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o canonical.lo canonical.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c canonical.c -fPIC -DPIC -o .libs/canonical.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o inline.lo inline.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c inline.c -fPIC -DPIC -o .libs/inline.o
/bin/bash ../libtool --tag=CC --mode=link gcc -std=gnu99 -g -O2 -Wall -L/usr/local/lib -o libgslpermutation.la init.lo file.lo permutation.lo permute.lo canonical.lo inline.lo -lm
libtool: link: ar cru .libs/libgslpermutation.a .libs/init.o .libs/file.o .libs/permutation.o .libs/permute.o .libs/canonical.o .libs/inline.o
libtool: link: ranlib .libs/libgslpermutation.a
libtool: link: ( cd ".libs" && rm -f "libgslpermutation.la" && ln -s "../libgslpermutation.la" "libgslpermutation.la" )
make[2]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/permutation'
make[2]: Nothing to be done for `install-exec-am'.
test -z "/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/include/gsl" || /bin/mkdir -p "/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/include/gsl"
/usr/bin/install -c -m 644 gsl_permutation.h gsl_permute.h gsl_permute_char.h gsl_permute_complex_double.h gsl_permute_complex_float.h gsl_permute_complex_long_double.h gsl_permute_double.h gsl_permute_float.h gsl_permute_int.h gsl_permute_long.h gsl_permute_long_double.h gsl_permute_short.h gsl_permute_uchar.h gsl_permute_uint.h gsl_permute_ulong.h gsl_permute_ushort.h gsl_permute_vector.h gsl_permute_vector_char.h gsl_permute_vector_complex_double.h gsl_permute_vector_complex_float.h gsl_permute_vector_complex_long_double.h gsl_permute_vector_double.h gsl_permute_vector_float.h gsl_permute_vector_int.h gsl_permute_vector_long.h gsl_permute_vector_long_double.h gsl_permute_vector_short.h gsl_permute_vector_uchar.h gsl_permute_vector_uint.h gsl_permute_vector_ulong.h gsl_permute_vector_ushort.h '/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/include/gsl'
make[2]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/permutation'
make[1]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/permutation'
Making install in complex
make[1]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/complex'
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o math.lo math.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c math.c -fPIC -DPIC -o .libs/math.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o inline.lo inline.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c inline.c -fPIC -DPIC -o .libs/inline.o
/bin/bash ../libtool --tag=CC --mode=link gcc -std=gnu99 -g -O2 -Wall -L/usr/local/lib -o libgslcomplex.la math.lo inline.lo -lm
libtool: link: ar cru .libs/libgslcomplex.a .libs/math.o .libs/inline.o
libtool: link: ranlib .libs/libgslcomplex.a
libtool: link: ( cd ".libs" && rm -f "libgslcomplex.la" && ln -s "../libgslcomplex.la" "libgslcomplex.la" )
make[2]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/complex'
make[2]: Nothing to be done for `install-exec-am'.
test -z "/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/include/gsl" || /bin/mkdir -p "/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/include/gsl"
/usr/bin/install -c -m 644 gsl_complex.h gsl_complex_math.h '/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/include/gsl'
make[2]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/complex'
make[1]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/complex'
Making install in sys
make[1]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/sys'
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o minmax.lo minmax.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c minmax.c -fPIC -DPIC -o .libs/minmax.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o prec.lo prec.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c prec.c -fPIC -DPIC -o .libs/prec.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o hypot.lo hypot.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c hypot.c -fPIC -DPIC -o .libs/hypot.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o log1p.lo log1p.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c log1p.c -fPIC -DPIC -o .libs/log1p.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o expm1.lo expm1.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c expm1.c -fPIC -DPIC -o .libs/expm1.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o coerce.lo coerce.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c coerce.c -fPIC -DPIC -o .libs/coerce.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o invhyp.lo invhyp.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c invhyp.c -fPIC -DPIC -o .libs/invhyp.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o pow_int.lo pow_int.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c pow_int.c -fPIC -DPIC -o .libs/pow_int.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o infnan.lo infnan.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c infnan.c -fPIC -DPIC -o .libs/infnan.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o fdiv.lo fdiv.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c fdiv.c -fPIC -DPIC -o .libs/fdiv.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o fcmp.lo fcmp.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c fcmp.c -fPIC -DPIC -o .libs/fcmp.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o ldfrexp.lo ldfrexp.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c ldfrexp.c -fPIC -DPIC -o .libs/ldfrexp.o
/bin/bash ../libtool --tag=CC --mode=link gcc -std=gnu99 -g -O2 -Wall -L/usr/local/lib -o libgslsys.la minmax.lo prec.lo hypot.lo log1p.lo expm1.lo coerce.lo invhyp.lo pow_int.lo infnan.lo fdiv.lo fcmp.lo ldfrexp.lo -lm
libtool: link: ar cru .libs/libgslsys.a .libs/minmax.o .libs/prec.o .libs/hypot.o .libs/log1p.o .libs/expm1.o .libs/coerce.o .libs/invhyp.o .libs/pow_int.o .libs/infnan.o .libs/fdiv.o .libs/fcmp.o .libs/ldfrexp.o
libtool: link: ranlib .libs/libgslsys.a
libtool: link: ( cd ".libs" && rm -f "libgslsys.la" && ln -s "../libgslsys.la" "libgslsys.la" )
make[2]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/sys'
make[2]: Nothing to be done for `install-exec-am'.
test -z "/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/include/gsl" || /bin/mkdir -p "/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/include/gsl"
/usr/bin/install -c -m 644 gsl_sys.h '/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/include/gsl'
make[2]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/sys'
make[1]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/sys'
Making install in eigen
make[1]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/eigen'
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o jacobi.lo jacobi.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c jacobi.c -fPIC -DPIC -o .libs/jacobi.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o symm.lo symm.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c symm.c -fPIC -DPIC -o .libs/symm.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o symmv.lo symmv.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c symmv.c -fPIC -DPIC -o .libs/symmv.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o nonsymm.lo nonsymm.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c nonsymm.c -fPIC -DPIC -o .libs/nonsymm.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o nonsymmv.lo nonsymmv.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c nonsymmv.c -fPIC -DPIC -o .libs/nonsymmv.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o herm.lo herm.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c herm.c -fPIC -DPIC -o .libs/herm.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o hermv.lo hermv.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c hermv.c -fPIC -DPIC -o .libs/hermv.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o gensymm.lo gensymm.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c gensymm.c -fPIC -DPIC -o .libs/gensymm.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o gensymmv.lo gensymmv.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c gensymmv.c -fPIC -DPIC -o .libs/gensymmv.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o genherm.lo genherm.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c genherm.c -fPIC -DPIC -o .libs/genherm.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o genhermv.lo genhermv.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c genhermv.c -fPIC -DPIC -o .libs/genhermv.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o gen.lo gen.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c gen.c -fPIC -DPIC -o .libs/gen.o
gen.c: In function 'gen_schur_standardize1':
gen.c:1571:11: warning: 'top' may be used uninitialized in this function [-Wmaybe-uninitialized]
for (i = 0; i <= top; ++i)
^
gen.c: In function 'gen_schur_standardize2':
gen.c:1752:14: warning: 'top' may be used uninitialized in this function [-Wmaybe-uninitialized]
xv = gsl_matrix_subcolumn(w->R, top, 0, top);
^
gen.c: In function 'gen_schur_decomp':
gen.c:1447:40: warning: 'top' may be used uninitialized in this function [-Wmaybe-uninitialized]
xv = gsl_matrix_column(w->Z, top + N - 1);
^
gen.c:1403:10: note: 'top' was declared here
size_t top;
^
gen.c:1316:76: warning: 'top' may be used uninitialized in this function [-Wmaybe-uninitialized]
xv = gsl_matrix_subrow(w->R, top + j, top + j + 1, w->size - top - j - 1);
^
gen.c:1299:13: note: 'top' was declared here
size_t j, top;
^
gen.c:1263:29: warning: 'top' may be used uninitialized in this function [-Wmaybe-uninitialized]
xv = gsl_matrix_subrow(w->R, top + j, top + 1, w->size - top - 1);
^
gen.c:1232:13: note: 'top' was declared here
size_t j, top;
^
gen.c:609:10: warning: 'top' may be used uninitialized in this function [-Wmaybe-uninitialized]
size_t top;
^
gen.c:1131:31: warning: 'top' may be used uninitialized in this function [-Wmaybe-uninitialized]
m = gsl_matrix_submatrix(w->H,
^
gen.c:829:10: note: 'top' was declared here
size_t top; /* location of H in original matrix */
^
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o genv.lo genv.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c genv.c -fPIC -DPIC -o .libs/genv.o
genv.c: In function 'genv_get_right_eigenvectors':
genv.c:343:32: warning: '*((void *)&im2+16)' may be used uninitialized in this function [-Wmaybe-uninitialized]
gsl_vector_view re, im, re2, im2;
^
In file included from ../gsl/gsl_vector_complex_double.h:28:0,
from ../gsl/gsl_vector.h:5,
from ../gsl/gsl_eigen.h:23,
from genv.c:24:
../gsl/gsl_vector_double.h:193:13: warning: '*((void *)&im2+8)' may be used uninitialized in this function [-Wmaybe-uninitialized]
v->data[i * v->stride] = x;
^
genv.c:343:32: note: '*((void *)&im2+8)' was declared here
gsl_vector_view re, im, re2, im2;
^
genv.c:343:27: warning: '*((void *)&re2+16)' may be used uninitialized in this function [-Wmaybe-uninitialized]
gsl_vector_view re, im, re2, im2;
^
In file included from ../gsl/gsl_vector_complex_double.h:28:0,
from ../gsl/gsl_vector.h:5,
from ../gsl/gsl_eigen.h:23,
from genv.c:24:
../gsl/gsl_vector_double.h:193:13: warning: '*((void *)&re2+8)' may be used uninitialized in this function [-Wmaybe-uninitialized]
v->data[i * v->stride] = x;
^
genv.c:343:27: note: '*((void *)&re2+8)' was declared here
gsl_vector_view re, im, re2, im2;
^
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o sort.lo sort.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c sort.c -fPIC -DPIC -o .libs/sort.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o francis.lo francis.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c francis.c -fPIC -DPIC -o .libs/francis.o
/bin/bash ../libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c -o schur.lo schur.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -g -O2 -Wall -c schur.c -fPIC -DPIC -o .libs/schur.o
/bin/bash ../libtool --tag=CC --mode=link gcc -std=gnu99 -g -O2 -Wall -L/usr/local/lib -o libgsleigen.la jacobi.lo symm.lo symmv.lo nonsymm.lo nonsymmv.lo herm.lo hermv.lo gensymm.lo gensymmv.lo genherm.lo genhermv.lo gen.lo genv.lo sort.lo francis.lo schur.lo -lm
libtool: link: ar cru .libs/libgsleigen.a .libs/jacobi.o .libs/symm.o .libs/symmv.o .libs/nonsymm.o .libs/nonsymmv.o .libs/herm.o .libs/hermv.o .libs/gensymm.o .libs/gensymmv.o .libs/genherm.o .libs/genhermv.o .libs/gen.o .libs/genv.o .libs/sort.o .libs/francis.o .libs/schur.o
libtool: link: ranlib .libs/libgsleigen.a
libtool: link: ( cd ".libs" && rm -f "libgsleigen.la" && ln -s "../libgsleigen.la" "libgsleigen.la" )
make[2]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/eigen'
make[2]: Nothing to be done for `install-exec-am'.
test -z "/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/include/gsl" || /bin/mkdir -p "/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/include/gsl"
/usr/bin/install -c -m 644 gsl_eigen.h '/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/include/gsl'
make[2]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/eigen'
make[1]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/eigen'
make[1]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13'
/bin/bash ./libtool --tag=CC --mode=compile gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/include -g -O2 -Wall -c -o version.lo version.c
libtool: compile: gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/include -g -O2 -Wall -c version.c -fPIC -DPIC -o .libs/version.o
/bin/bash ./libtool --tag=CC --mode=link gcc -std=gnu99 -g -O2 -Wall -version-info 14:0:14 -L/usr/local/lib -o libgsl.la -rpath /home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/lib version.lo block/libgslblock.la matrix/libgslmatrix.la vector/libgslvector.la rng/libgslrng.la randist/libgslrandist.la cdf/libgslcdf.la cblas/libgslcblas.la specfunc/libgslspecfunc.la linalg/libgsllinalg.la statistics/libgslstatistics.la blas/libgslblas.la roots/libgslroots.la err/libgslerr.la min/libgslmin.la permutation/libgslpermutation.la complex/libgslcomplex.la sys/libgslsys.la eigen/libgsleigen.la -lm
libtool: link: gcc -std=gnu99 -shared .libs/version.o -Wl,--whole-archive block/.libs/libgslblock.a matrix/.libs/libgslmatrix.a vector/.libs/libgslvector.a rng/.libs/libgslrng.a randist/.libs/libgslrandist.a cdf/.libs/libgslcdf.a specfunc/.libs/libgslspecfunc.a linalg/.libs/libgsllinalg.a statistics/.libs/libgslstatistics.a blas/.libs/libgslblas.a roots/.libs/libgslroots.a err/.libs/libgslerr.a min/.libs/libgslmin.a permutation/.libs/libgslpermutation.a complex/.libs/libgslcomplex.a sys/.libs/libgslsys.a eigen/.libs/libgsleigen.a -Wl,--no-whole-archive -Wl,-rpath -Wl,/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/cblas/.libs -Wl,-rpath -Wl,/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/lib -L/usr/local/lib cblas/.libs/libgslcblas.so -lm -Wl,-soname -Wl,libgsl.so.0 -o .libs/libgsl.so.0.14.0
libtool: link: (cd ".libs" && rm -f "libgsl.so.0" && ln -s "libgsl.so.0.14.0" "libgsl.so.0")
libtool: link: (cd ".libs" && rm -f "libgsl.so" && ln -s "libgsl.so.0.14.0" "libgsl.so")
libtool: link: ( cd ".libs" && rm -f "libgsl.la" && ln -s "../libgsl.la" "libgsl.la" )
gcc -std=gnu99 -DHAVE_CONFIG_H -I. -I/usr/local/include -g -O2 -Wall -c gsl-randist.c
/bin/bash ./libtool --tag=CC --mode=link gcc -std=gnu99 -g -O2 -Wall -L/usr/local/lib -o gsl-randist gsl-randist.o libgsl.la cblas/libgslcblas.la -lm
libtool: link: gcc -std=gnu99 -g -O2 -Wall -o .libs/gsl-randist gsl-randist.o -L/usr/local/lib ./.libs/libgsl.so /home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/cblas/.libs/libgslcblas.so cblas/.libs/libgslcblas.so -lm -Wl,-rpath -Wl,/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/lib
creating gsl-config
creating gsl.pc
make[2]: Entering directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13'
test -z "/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/lib" || /bin/mkdir -p "/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/lib"
/bin/bash ./libtool --mode=install /usr/bin/install -c libgsl.la '/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/lib'
libtool: install: warning: relinking `libgsl.la'
libtool: install: (cd /home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13; /bin/bash /home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13/libtool --tag CC --mode=relink gcc -std=gnu99 -g -O2 -Wall -version-info 14:0:14 -L/usr/local/lib -o libgsl.la -rpath /home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/lib version.lo block/libgslblock.la matrix/libgslmatrix.la vector/libgslvector.la rng/libgslrng.la randist/libgslrandist.la cdf/libgslcdf.la cblas/libgslcblas.la specfunc/libgslspecfunc.la linalg/libgsllinalg.la statistics/libgslstatistics.la blas/libgslblas.la roots/libgslroots.la err/libgslerr.la min/libgslmin.la permutation/libgslpermutation.la complex/libgslcomplex.la sys/libgslsys.la eigen/libgsleigen.la -lm )
libtool: relink: gcc -std=gnu99 -shared .libs/version.o -Wl,--whole-archive block/.libs/libgslblock.a matrix/.libs/libgslmatrix.a vector/.libs/libgslvector.a rng/.libs/libgslrng.a randist/.libs/libgslrandist.a cdf/.libs/libgslcdf.a specfunc/.libs/libgslspecfunc.a linalg/.libs/libgsllinalg.a statistics/.libs/libgslstatistics.a blas/.libs/libgslblas.a roots/.libs/libgslroots.a err/.libs/libgslerr.a min/.libs/libgslmin.a permutation/.libs/libgslpermutation.a complex/.libs/libgslcomplex.a sys/.libs/libgslsys.a eigen/.libs/libgsleigen.a -Wl,--no-whole-archive -Wl,-rpath -Wl,/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/lib -L/usr/local/lib -L/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/lib -lgslcblas -lm -Wl,-soname -Wl,libgsl.so.0 -o .libs/libgsl.so.0.14.0
libtool: install: /usr/bin/install -c .libs/libgsl.so.0.14.0T /home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/lib/libgsl.so.0.14.0
libtool: install: (cd /home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/lib && { ln -s -f libgsl.so.0.14.0 libgsl.so.0 || { rm -f libgsl.so.0 && ln -s libgsl.so.0.14.0 libgsl.so.0; }; })
libtool: install: (cd /home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/lib && { ln -s -f libgsl.so.0.14.0 libgsl.so || { rm -f libgsl.so && ln -s libgsl.so.0.14.0 libgsl.so; }; })
libtool: install: /usr/bin/install -c .libs/libgsl.lai /home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/lib/libgsl.la
libtool: finish: PATH="/opt/moab/bin:/app/bin:/usr/local/bin:/usr/bin:/bin:/usr/local/bin:/usr/local/root/bin:/usr/local/variant_effect_predictor:/sbin" ldconfig -n /home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/lib
----------------------------------------------------------------------
Libraries have been installed in:
/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/lib
If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
- add LIBDIR to the `LD_LIBRARY_PATH' environment variable
during execution
- add LIBDIR to the `LD_RUN_PATH' environment variable
during linking
- use the `-Wl,-rpath -Wl,LIBDIR' linker flag
- have your system administrator add LIBDIR to `/etc/ld.so.conf'
See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
test -z "/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/bin" || /bin/mkdir -p "/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/bin"
/bin/bash ./libtool --mode=install /usr/bin/install -c gsl-randist '/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/bin'
libtool: install: /usr/bin/install -c .libs/gsl-randist /home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/bin/gsl-randist
test -z "/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/bin" || /bin/mkdir -p "/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/bin"
/usr/bin/install -c gsl-config '/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/bin'
test -z "/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/share/aclocal" || /bin/mkdir -p "/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/share/aclocal"
/usr/bin/install -c -m 644 gsl.m4 '/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/share/aclocal'
test -z "/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/lib/pkgconfig" || /bin/mkdir -p "/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/lib/pkgconfig"
/usr/bin/install -c -m 644 gsl.pc '/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/lib/pkgconfig'
test -z "/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/include/gsl" || /bin/mkdir -p "/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/include/gsl"
/usr/bin/install -c -m 644 gsl_math.h gsl_pow_int.h gsl_nan.h gsl_machine.h gsl_mode.h gsl_precision.h gsl_types.h gsl_version.h gsl_minmax.h gsl_inline.h '/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/include/gsl'
make[2]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13'
make[1]: Leaving directory `/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gsl-1.13'
configure: Using the following compilation and linking flags for flowClust
configure: PKG_CFLAGS= -I/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/include
configure: PKG_LIBS=
configure: FLOWCLUST_DEFS=-DGSL_MAJOR=1 -DGSL_MINOR=13 -DGSL_STATIC
configure: Compiling using GSL version: '1.13.0'.
configure: Using bundled GSL: 'yes'.
configure: creating ./config.status
config.status: creating src/Makevars
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-3.3-bioc/R/include -DNDEBUG -I/usr/local/include -I/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/include -DGSL_MAJOR=1 -DGSL_MINOR=13 -DGSL_STATIC -fpic -g -O2 -Wall -c BoxCox.c -o BoxCox.o
gcc -std=gnu99 -I/home/biocbuild/bbs-3.3-bioc/R/include -DNDEBUG -I/usr/local/include -I/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/include -DGSL_MAJOR=1 -DGSL_MINOR=13 -DGSL_STATIC -fpic -g -O2 -Wall -c BoxCoxPriors.c -o BoxCoxPriors.o
BoxCoxPriors.c: In function ‘BoxCoxGradientPriors’:
BoxCoxPriors.c:57:16: warning: unused variable ‘rowZ’ [-Wunused-variable]
rowPrecision, rowZ, rowLambda0;
^
BoxCoxPriors.c:33:24: warning: unused variable ‘kappa0’ [-Wunused-variable]
double *nu0 = p->nu0, kappa0 = p->kappa0;
^
BoxCoxPriors.c:32:7: warning: unused variable ‘itersolve’ [-Wunused-variable]
int *itersolve = p->itersolve;
^
BoxCoxPriors.c:31:6: warning: unused variable ‘iter’ [-Wunused-variable]
int iter = p->iter;
^
BoxCoxPriors.c:28:6: warning: unused variable ‘model’ [-Wunused-variable]
int model = *p->model;
^
BoxCoxPriors.c:23:14: warning: unused variable ‘SumZlogY’ [-Wunused-variable]
gsl_vector *SumZlogY = p->SumZlogY;
^
BoxCoxPriors.c:15:14: warning: unused variable ‘Precision’ [-Wunused-variable]
gsl_matrix *Precision = p->Precision; // will be updated
^
gcc -std=gnu99 -I/home/biocbuild/bbs-3.3-bioc/R/include -DNDEBUG -I/usr/local/include -I/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/include -DGSL_MAJOR=1 -DGSL_MINOR=13 -DGSL_STATIC -fpic -g -O2 -Wall -c Nu.c -o Nu.o
gcc -std=gnu99 -I/home/biocbuild/bbs-3.3-bioc/R/include -DNDEBUG -I/usr/local/include -I/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/include -DGSL_MAJOR=1 -DGSL_MINOR=13 -DGSL_STATIC -fpic -g -O2 -Wall -c flowClust.c -o flowClust.o
flowClust.c: In function ‘flowClust’:
flowClust.c:48:2: warning: unused variable ‘matrixZUY2’ [-Wunused-variable]
matrixZUY2;
^
flowClust.c:46:48: warning: unused variable ‘subRowZUY2’ [-Wunused-variable]
rowYTransS, rowZUY, subRowZUY, rowZ, rowZUY2, subRowZUY2;
^
flowClust.c:46:39: warning: unused variable ‘rowZUY2’ [-Wunused-variable]
rowYTransS, rowZUY, subRowZUY, rowZ, rowZUY2, subRowZUY2;
^
flowClust.c: In function ‘ECMUpdateSigmaG2’:
flowClust.c:1111:6: warning: unused variable ‘i’ [-Wunused-variable]
int i=0;
^
flowClust.c: In function ‘flowClust’:
flowClust.c:702:11: warning: ‘s3’ may be used uninitialized in this function [-Wmaybe-uninitialized]
status = gsl_min_fminimizer_set(s3, &F3, *nu, *nuLow, *nuUp);
^
flowClust.c:647:13: warning: ‘s2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
nu_hi = gsl_root_fsolver_x_upper(s2);
^
flowClust.c:348:12: warning: ‘s’ may be used uninitialized in this function [-Wmaybe-uninitialized]
x_hi = gsl_root_fsolver_x_upper(s);
^
gcc -std=gnu99 -I/home/biocbuild/bbs-3.3-bioc/R/include -DNDEBUG -I/usr/local/include -I/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/include -DGSL_MAJOR=1 -DGSL_MINOR=13 -DGSL_STATIC -fpic -g -O2 -Wall -c flowClustGaussian.c -o flowClustGaussian.o
flowClustGaussian.c: In function ‘flowClustGaussian’:
flowClustGaussian.c:207:12: warning: ‘s’ may be used uninitialized in this function [-Wmaybe-uninitialized]
x_hi = gsl_root_fsolver_x_upper(s);
^
gcc -std=gnu99 -I/home/biocbuild/bbs-3.3-bioc/R/include -DNDEBUG -I/usr/local/include -I/home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/00_pkg_src/flowClust/src/gslbuild/include -DGSL_MAJOR=1 -DGSL_MINOR=13 -DGSL_STATIC -fpic -g -O2 -Wall -c ranMVNT.c -o ranMVNT.o
gcc -std=gnu99 -shared -L/home/biocbuild/bbs-3.3-bioc/R/lib -L/usr/local/lib -o flowClust.so BoxCox.o BoxCoxPriors.o Nu.o flowClust.o flowClustGaussian.o ranMVNT.o gsl-1.13/blas/.libs/blas.o gsl-1.13/block/.libs/block.o gsl-1.13/block/.libs/file.o gsl-1.13/block/.libs/init.o gsl-1.13/cblas/.libs/caxpy.o gsl-1.13/cblas/.libs/ccopy.o gsl-1.13/cblas/.libs/cdotc_sub.o gsl-1.13/cblas/.libs/cdotu_sub.o gsl-1.13/cblas/.libs/cgbmv.o gsl-1.13/cblas/.libs/cgemm.o gsl-1.13/cblas/.libs/cgemv.o gsl-1.13/cblas/.libs/cgerc.o gsl-1.13/cblas/.libs/cgeru.o gsl-1.13/cblas/.libs/chbmv.o gsl-1.13/cblas/.libs/chemm.o gsl-1.13/cblas/.libs/chemv.o gsl-1.13/cblas/.libs/cher.o gsl-1.13/cblas/.libs/cher2.o gsl-1.13/cblas/.libs/cher2k.o gsl-1.13/cblas/.libs/cherk.o gsl-1.13/cblas/.libs/chpmv.o gsl-1.13/cblas/.libs/chpr.o gsl-1.13/cblas/.libs/chpr2.o gsl-1.13/cblas/.libs/cscal.o gsl-1.13/cblas/.libs/csscal.o gsl-1.13/cblas/.libs/cswap.o gsl-1.13/cblas/.libs/csymm.o gsl-1.13/cblas/.libs/csyr2k.o gsl-1.13/cblas/.libs/csyrk.o gsl-1.13/cblas/.libs/ctbmv.o gsl-1.13/cblas/.libs/ctbsv.o gsl-1.13/cblas/.libs/ctpmv.o gsl-1.13/cblas/.libs/ctpsv.o gsl-1.13/cblas/.libs/ctrmm.o gsl-1.13/cblas/.libs/ctrmv.o gsl-1.13/cblas/.libs/ctrsm.o gsl-1.13/cblas/.libs/ctrsv.o gsl-1.13/cblas/.libs/dasum.o gsl-1.13/cblas/.libs/daxpy.o gsl-1.13/cblas/.libs/dcopy.o gsl-1.13/cblas/.libs/ddot.o gsl-1.13/cblas/.libs/dgbmv.o gsl-1.13/cblas/.libs/dgemm.o gsl-1.13/cblas/.libs/dgemv.o gsl-1.13/cblas/.libs/dger.o gsl-1.13/cblas/.libs/dnrm2.o gsl-1.13/cblas/.libs/drot.o gsl-1.13/cblas/.libs/drotg.o gsl-1.13/cblas/.libs/drotm.o gsl-1.13/cblas/.libs/drotmg.o gsl-1.13/cblas/.libs/dsbmv.o gsl-1.13/cblas/.libs/dscal.o gsl-1.13/cblas/.libs/dsdot.o gsl-1.13/cblas/.libs/dspmv.o gsl-1.13/cblas/.libs/dspr.o gsl-1.13/cblas/.libs/dspr2.o gsl-1.13/cblas/.libs/dswap.o gsl-1.13/cblas/.libs/dsymm.o gsl-1.13/cblas/.libs/dsymv.o gsl-1.13/cblas/.libs/dsyr.o gsl-1.13/cblas/.libs/dsyr2.o gsl-1.13/cblas/.libs/dsyr2k.o gsl-1.13/cblas/.libs/dsyrk.o gsl-1.13/cblas/.libs/dtbmv.o gsl-1.13/cblas/.libs/dtbsv.o gsl-1.13/cblas/.libs/dtpmv.o gsl-1.13/cblas/.libs/dtpsv.o gsl-1.13/cblas/.libs/dtrmm.o gsl-1.13/cblas/.libs/dtrmv.o gsl-1.13/cblas/.libs/dtrsm.o gsl-1.13/cblas/.libs/dtrsv.o gsl-1.13/cblas/.libs/dzasum.o gsl-1.13/cblas/.libs/dznrm2.o gsl-1.13/cblas/.libs/icamax.o gsl-1.13/cblas/.libs/idamax.o gsl-1.13/cblas/.libs/isamax.o gsl-1.13/cblas/.libs/izamax.o gsl-1.13/cblas/.libs/sasum.o gsl-1.13/cblas/.libs/saxpy.o gsl-1.13/cblas/.libs/scasum.o gsl-1.13/cblas/.libs/scnrm2.o gsl-1.13/cblas/.libs/scopy.o gsl-1.13/cblas/.libs/sdot.o gsl-1.13/cblas/.libs/sdsdot.o gsl-1.13/cblas/.libs/sgbmv.o gsl-1.13/cblas/.libs/sgemm.o gsl-1.13/cblas/.libs/sgemv.o gsl-1.13/cblas/.libs/sger.o gsl-1.13/cblas/.libs/snrm2.o gsl-1.13/cblas/.libs/srot.o gsl-1.13/cblas/.libs/srotg.o gsl-1.13/cblas/.libs/srotm.o gsl-1.13/cblas/.libs/srotmg.o gsl-1.13/cblas/.libs/ssbmv.o gsl-1.13/cblas/.libs/sscal.o gsl-1.13/cblas/.libs/sspmv.o 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gsl-1.13/specfunc/.libs/bessel_Jn.o gsl-1.13/specfunc/.libs/bessel_Jnu.o gsl-1.13/specfunc/.libs/bessel_K0.o gsl-1.13/specfunc/.libs/bessel_K1.o gsl-1.13/specfunc/.libs/bessel_Kn.o gsl-1.13/specfunc/.libs/bessel_Knu.o gsl-1.13/specfunc/.libs/bessel_Y0.o gsl-1.13/specfunc/.libs/bessel_Y1.o gsl-1.13/specfunc/.libs/bessel_Yn.o gsl-1.13/specfunc/.libs/bessel_Ynu.o gsl-1.13/specfunc/.libs/bessel_amp_phase.o gsl-1.13/specfunc/.libs/bessel_i.o gsl-1.13/specfunc/.libs/bessel_j.o gsl-1.13/specfunc/.libs/bessel_k.o gsl-1.13/specfunc/.libs/bessel_olver.o gsl-1.13/specfunc/.libs/bessel_sequence.o gsl-1.13/specfunc/.libs/bessel_temme.o gsl-1.13/specfunc/.libs/bessel_y.o gsl-1.13/specfunc/.libs/bessel_zero.o gsl-1.13/specfunc/.libs/beta.o gsl-1.13/specfunc/.libs/beta_inc.o gsl-1.13/specfunc/.libs/clausen.o gsl-1.13/specfunc/.libs/coulomb.o gsl-1.13/specfunc/.libs/coulomb_bound.o gsl-1.13/specfunc/.libs/coupling.o gsl-1.13/specfunc/.libs/dawson.o gsl-1.13/specfunc/.libs/debye.o gsl-1.13/specfunc/.libs/dilog.o gsl-1.13/specfunc/.libs/elementary.o gsl-1.13/specfunc/.libs/ellint.o gsl-1.13/specfunc/.libs/elljac.o gsl-1.13/specfunc/.libs/erfc.o gsl-1.13/specfunc/.libs/exp.o gsl-1.13/specfunc/.libs/expint.o gsl-1.13/specfunc/.libs/expint3.o gsl-1.13/specfunc/.libs/fermi_dirac.o gsl-1.13/specfunc/.libs/gamma.o gsl-1.13/specfunc/.libs/gamma_inc.o gsl-1.13/specfunc/.libs/gegenbauer.o gsl-1.13/specfunc/.libs/hyperg.o gsl-1.13/specfunc/.libs/hyperg_0F1.o gsl-1.13/specfunc/.libs/hyperg_1F1.o gsl-1.13/specfunc/.libs/hyperg_2F0.o gsl-1.13/specfunc/.libs/hyperg_2F1.o gsl-1.13/specfunc/.libs/hyperg_U.o gsl-1.13/specfunc/.libs/laguerre.o gsl-1.13/specfunc/.libs/lambert.o gsl-1.13/specfunc/.libs/legendre_H3d.o gsl-1.13/specfunc/.libs/legendre_Qn.o gsl-1.13/specfunc/.libs/legendre_con.o gsl-1.13/specfunc/.libs/legendre_poly.o gsl-1.13/specfunc/.libs/log.o gsl-1.13/specfunc/.libs/mathieu_angfunc.o gsl-1.13/specfunc/.libs/mathieu_charv.o gsl-1.13/specfunc/.libs/mathieu_coeff.o gsl-1.13/specfunc/.libs/mathieu_radfunc.o gsl-1.13/specfunc/.libs/mathieu_workspace.o gsl-1.13/specfunc/.libs/poch.o gsl-1.13/specfunc/.libs/pow_int.o gsl-1.13/specfunc/.libs/psi.o gsl-1.13/specfunc/.libs/result.o gsl-1.13/specfunc/.libs/shint.o gsl-1.13/specfunc/.libs/sinint.o gsl-1.13/specfunc/.libs/synchrotron.o gsl-1.13/specfunc/.libs/transport.o gsl-1.13/specfunc/.libs/trig.o gsl-1.13/specfunc/.libs/zeta.o gsl-1.13/statistics/.libs/absdev.o gsl-1.13/statistics/.libs/covariance.o gsl-1.13/statistics/.libs/kurtosis.o gsl-1.13/statistics/.libs/lag1.o gsl-1.13/statistics/.libs/mean.o gsl-1.13/statistics/.libs/median.o gsl-1.13/statistics/.libs/minmax.o gsl-1.13/statistics/.libs/p_variance.o gsl-1.13/statistics/.libs/quantiles.o gsl-1.13/statistics/.libs/skew.o gsl-1.13/statistics/.libs/ttest.o gsl-1.13/statistics/.libs/variance.o gsl-1.13/statistics/.libs/wabsdev.o gsl-1.13/statistics/.libs/wkurtosis.o gsl-1.13/statistics/.libs/wmean.o gsl-1.13/statistics/.libs/wskew.o gsl-1.13/statistics/.libs/wvariance.o gsl-1.13/sys/.libs/coerce.o gsl-1.13/sys/.libs/expm1.o gsl-1.13/sys/.libs/fcmp.o gsl-1.13/sys/.libs/fdiv.o gsl-1.13/sys/.libs/hypot.o gsl-1.13/sys/.libs/infnan.o gsl-1.13/sys/.libs/invhyp.o gsl-1.13/sys/.libs/ldfrexp.o gsl-1.13/sys/.libs/log1p.o gsl-1.13/sys/.libs/minmax.o gsl-1.13/sys/.libs/pow_int.o gsl-1.13/sys/.libs/prec.o gsl-1.13/vector/.libs/copy.o gsl-1.13/vector/.libs/file.o gsl-1.13/vector/.libs/init.o gsl-1.13/vector/.libs/minmax.o gsl-1.13/vector/.libs/oper.o gsl-1.13/vector/.libs/prop.o gsl-1.13/vector/.libs/reim.o gsl-1.13/vector/.libs/subvector.o gsl-1.13/vector/.libs/swap.o gsl-1.13/vector/.libs/vector.o gsl-1.13/vector/.libs/view.o -L/home/biocbuild/bbs-3.3-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.3-bioc/meat/flowClust.Rcheck/flowClust/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (flowClust)