destiny 1.2.1
Philipp Angerer
| Snapshot Date: 2016-10-12 17:20:15 -0700 (Wed, 12 Oct 2016) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_3/madman/Rpacks/destiny | | Last Changed Rev: 117305 / Revision: 122332 | | Last Changed Date: 2016-05-11 07:31:54 -0700 (Wed, 11 May 2016) |
| zin2 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | OK | OK | WARNINGS | |  |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | [ OK ] | OK | WARNINGS | OK | |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | WARNINGS | OK | |
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### Running command:
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### rm -rf destiny.buildbin-libdir && mkdir destiny.buildbin-libdir && C:\cygwin\bin\curl.exe -O http://zin2/BBS/3.3/bioc/src/contrib/destiny_1.2.1.tar.gz && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --library=destiny.buildbin-libdir --merge-multiarch destiny_1.2.1.tar.gz && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL destiny_1.2.1.zip && rm destiny_1.2.1.tar.gz destiny_1.2.1.zip
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install for i386
* installing *source* package 'destiny' ...
** libs
C:/Rtools/mingw_32/bin/g++ -std=c++0x -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I"E:/biocbld/bbs-3.3-bioc/R/library/Rcpp/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/RcppEigen/include" -I"c:/local323/include" -g -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++ -std=c++0x -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I"E:/biocbld/bbs-3.3-bioc/R/library/Rcpp/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/RcppEigen/include" -I"c:/local323/include" -g -O2 -Wall -mtune=core2 -c censoring.cpp -o censoring.o
C:/Rtools/mingw_32/bin/g++ -std=c++0x -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I"E:/biocbld/bbs-3.3-bioc/R/library/Rcpp/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/RcppEigen/include" -I"c:/local323/include" -g -O2 -Wall -mtune=core2 -c no_censoring.cpp -o no_censoring.o
no_censoring.cpp: In function 'double cor(Rcpp::NumericVector, Rcpp::NumericVector)':
no_censoring.cpp:16:52: warning: operation on 'v1sqr_sum' may be undefined [-Wsequence-point]
v1sum = v2sum = v12sum = v1sqr_sum = v1sqr_sum = 0;
^
no_censoring.cpp:27:54: warning: 'v2sqr_sum' may be used uninitialized in this function [-Wmaybe-uninitialized]
const double deno = (n*v1sqr_sum - v1sum*v1sum) * (n*v2sqr_sum - v2sum*v2sum);
^
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o destiny.dll tmp.def RcppExports.o censoring.o no_censoring.o -Lc:/local323/lib/i386 -Lc:/local323/lib -LE:/biocbld/BBS-3˜1.3-B/R/bin/i386 -lR
installing to E:/biocbld/bbs-3.3-bioc/meat/destiny.buildbin-libdir/destiny/libs/i386
** R
** data
** demo
** inst
** preparing package for lazy loading
Creating a generic function for 'plot' from package 'graphics' in package 'destiny'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'destiny' ...
** libs
C:/Rtools/mingw_64/bin/g++ -std=c++0x -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I"E:/biocbld/bbs-3.3-bioc/R/library/Rcpp/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/RcppEigen/include" -I"c:/local323/include" -g -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++ -std=c++0x -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I"E:/biocbld/bbs-3.3-bioc/R/library/Rcpp/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/RcppEigen/include" -I"c:/local323/include" -g -O2 -Wall -mtune=core2 -c censoring.cpp -o censoring.o
censoring.cpp: In function 'Rcpp::NumericMatrix predict_censoring_impl(Rcpp::NumericMatrix, Rcpp::NumericMatrix, double, Rcpp::NumericVector, Rcpp::NumericVector, double)':
censoring.cpp:72:17: warning: 'm1' may be used uninitialized in this function [-Wmaybe-uninitialized]
/ sqrt(m1-m0);
^
censoring.cpp:55:15: note: 'm1' was declared here
double m0, m1;
^
censoring.cpp:71:22: warning: 'm0' may be used uninitialized in this function [-Wmaybe-uninitialized]
* ( std::erfc((m0-v) / sigma) - std::erfc((m1-v) / sigma) )
^
censoring.cpp:55:11: note: 'm0' was declared here
double m0, m1;
^
censoring.cpp:66:33: warning: 'use_d' may be used uninitialized in this function [-Wmaybe-uninitialized]
const double v = use_d ? d : c;
^
censoring.cpp:18:7: note: 'use_d' was declared here
bool use_d;
^
censoring.cpp: In function 'Eigen::SparseMatrix<double, 0, int> censoring_impl(Rcpp::NumericMatrix, SEXP, SEXP, SEXP, double, SEXP, Rcpp::Function)':
censoring.cpp:72:17: warning: 'm1' may be used uninitialized in this function [-Wmaybe-uninitialized]
/ sqrt(m1-m0);
^
censoring.cpp:55:15: note: 'm1' was declared here
double m0, m1;
^
censoring.cpp:71:22: warning: 'm0' may be used uninitialized in this function [-Wmaybe-uninitialized]
* ( std::erfc((m0-v) / sigma) - std::erfc((m1-v) / sigma) )
^
censoring.cpp:55:11: note: 'm0' was declared here
double m0, m1;
^
censoring.cpp:66:33: warning: 'use_d' may be used uninitialized in this function [-Wmaybe-uninitialized]
const double v = use_d ? d : c;
^
censoring.cpp:18:7: note: 'use_d' was declared here
bool use_d;
^
C:/Rtools/mingw_64/bin/g++ -std=c++0x -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I"E:/biocbld/bbs-3.3-bioc/R/library/Rcpp/include" -I"E:/biocbld/bbs-3.3-bioc/R/library/RcppEigen/include" -I"c:/local323/include" -g -O2 -Wall -mtune=core2 -c no_censoring.cpp -o no_censoring.o
no_censoring.cpp: In function 'double cor(Rcpp::NumericVector, Rcpp::NumericVector)':
no_censoring.cpp:16:52: warning: operation on 'v1sqr_sum' may be undefined [-Wsequence-point]
v1sum = v2sum = v12sum = v1sqr_sum = v1sqr_sum = 0;
^
no_censoring.cpp:27:54: warning: 'v2sqr_sum' may be used uninitialized in this function [-Wmaybe-uninitialized]
const double deno = (n*v1sqr_sum - v1sum*v1sum) * (n*v2sqr_sum - v2sum*v2sum);
^
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o destiny.dll tmp.def RcppExports.o censoring.o no_censoring.o -Lc:/local323/lib/x64 -Lc:/local323/lib -LE:/biocbld/BBS-3˜1.3-B/R/bin/x64 -lR
installing to E:/biocbld/bbs-3.3-bioc/meat/destiny.buildbin-libdir/destiny/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'destiny' as destiny_1.2.1.zip
* DONE (destiny)
* installing to library 'E:/biocbld/bbs-3.3-bioc/R/library'
package 'destiny' successfully unpacked and MD5 sums checked