TargetScore 1.10.0
Yue Li
| Snapshot Date: 2016-10-12 17:20:15 -0700 (Wed, 12 Oct 2016) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_3/madman/Rpacks/TargetScore | | Last Changed Rev: 117079 / Revision: 122332 | | Last Changed Date: 2016-05-03 14:20:18 -0700 (Tue, 03 May 2016) |
| zin2 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | OK | |  |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | [ OK ] | OK | |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | OK | OK | |
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### Running command:
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### rm -rf TargetScore.buildbin-libdir TargetScore.Rcheck && mkdir TargetScore.buildbin-libdir TargetScore.Rcheck && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=TargetScore.buildbin-libdir TargetScore_1.10.0.tar.gz >TargetScore.Rcheck\00install.out 2>&1 && cp TargetScore.Rcheck\00install.out TargetScore-install.out && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=TargetScore.buildbin-libdir --install="check:TargetScore-install.out" --force-multiarch --no-vignettes --timings TargetScore_1.10.0.tar.gz
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* using log directory 'E:/biocbld/bbs-3.3-bioc/meat/TargetScore.Rcheck'
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'TargetScore/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'TargetScore' version '1.10.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'TargetScore' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
dot.ext: no visible global function definition for 'size'
getTargetScores: no visible global function definition for
'get_TargetScanHuman_contextScore'
getTargetScores: no visible global function definition for
'get_TargetScanHuman_PCT'
getTargetScores: no visible global function definition for
'get_validated_targets'
getTargetScores: no visible global function definition for
'get_miRNA_family_info'
getTargetScores: no visible global function definition for
'get_precomputed_logFC'
getTargetScores : <anonymous>: no visible global function definition
for 'cor'
getTargetScores: no visible global function definition for 'aggregate'
logmvgamma: no visible global function definition for 'size'
targetScore: no visible global function definition for 'as.roman'
targetScore : <anonymous>: no visible global function definition for
'as.roman'
targetScore: no visible global function definition for 'sigmoid'
Undefined global functions or variables:
aggregate as.roman cor get_TargetScanHuman_PCT
get_TargetScanHuman_contextScore get_miRNA_family_info
get_precomputed_logFC get_validated_targets sigmoid size
Consider adding
importFrom("stats", "aggregate", "cor")
importFrom("utils", "as.roman")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'E:/biocbld/bbs-3.3-bioc/meat/TargetScore.Rcheck/00check.log'
for details.
install for i386
* installing *source* package 'TargetScore' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'TargetScore' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'TargetScore' as TargetScore_1.10.0.zip
* DONE (TargetScore)