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BioC 3.3: INSTALL report for RpsiXML on moscato2

This page was generated on 2016-10-13 12:48:39 -0700 (Thu, 13 Oct 2016).

Package 1004/1210HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RpsiXML 2.14.0
Jitao David Zhang
Snapshot Date: 2016-10-12 17:20:15 -0700 (Wed, 12 Oct 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_3/madman/Rpacks/RpsiXML
Last Changed Rev: 117079 / Revision: 122332
Last Changed Date: 2016-05-03 14:20:18 -0700 (Tue, 03 May 2016)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: RpsiXML
Version: 2.14.0
Command: rm -rf RpsiXML.buildbin-libdir && mkdir RpsiXML.buildbin-libdir && C:\cygwin\bin\curl.exe -O http://zin2/BBS/3.3/bioc/src/contrib/RpsiXML_2.14.0.tar.gz && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --library=RpsiXML.buildbin-libdir --merge-multiarch RpsiXML_2.14.0.tar.gz && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL RpsiXML_2.14.0.zip && rm RpsiXML_2.14.0.tar.gz RpsiXML_2.14.0.zip
StartedAt: 2016-10-12 18:45:04 -0700 (Wed, 12 Oct 2016)
EndedAt: 2016-10-12 18:46:13 -0700 (Wed, 12 Oct 2016)
EllapsedTime: 68.4 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   rm -rf RpsiXML.buildbin-libdir && mkdir RpsiXML.buildbin-libdir  && C:\cygwin\bin\curl.exe -O http://zin2/BBS/3.3/bioc/src/contrib/RpsiXML_2.14.0.tar.gz && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --library=RpsiXML.buildbin-libdir --merge-multiarch RpsiXML_2.14.0.tar.gz && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL RpsiXML_2.14.0.zip  && rm RpsiXML_2.14.0.tar.gz RpsiXML_2.14.0.zip
###
##############################################################################
##############################################################################




install for i386

* installing *source* package 'RpsiXML' ...
** R
** inst
** preparing package for lazy loading
No methods found in "Biobase" for requests: listlen
No methods found in "annotate" for requests: pubmed, buildPubMedAbst
Note: in method for 'head' with signature 'x="ANY"': expanding the
signature to include omitted arguments in definition: x = "missing"
Note: in method for 'tail' with signature 'x="ANY"': expanding the
signature to include omitted arguments in definition: x = "missing"
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
No methods found in "Biobase" for requests: listlen
No methods found in "annotate" for requests: pubmed, buildPubMedAbst

install for x64

* installing *source* package 'RpsiXML' ...
** testing if installed package can be loaded
No methods found in "Biobase" for requests: listlen
No methods found in "annotate" for requests: pubmed, buildPubMedAbst
* MD5 sums
packaged installation of 'RpsiXML' as RpsiXML_2.14.0.zip
* DONE (RpsiXML)
* installing to library 'E:/biocbld/bbs-3.3-bioc/R/library'
package 'RpsiXML' successfully unpacked and MD5 sums checked