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BioC 3.3: BUILD report for Rcpi on oaxaca

This page was generated on 2016-10-13 13:00:05 -0700 (Thu, 13 Oct 2016).

Package 944/1210HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Rcpi 1.8.0
Nan Xiao
Snapshot Date: 2016-10-12 17:20:15 -0700 (Wed, 12 Oct 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_3/madman/Rpacks/Rcpi
Last Changed Rev: 117079 / Revision: 122332
Last Changed Date: 2016-05-03 14:20:18 -0700 (Tue, 03 May 2016)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  ERROR  skipped 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK  ERROR  ERROR 
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded [ ERROR ] skipped  skipped 

Summary

Package: Rcpi
Version: 1.8.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data Rcpi
StartedAt: 2016-10-12 21:06:34 -0700 (Wed, 12 Oct 2016)
EndedAt: 2016-10-12 21:07:11 -0700 (Wed, 12 Oct 2016)
EllapsedTime: 37.7 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data Rcpi
###
##############################################################################
##############################################################################


* checking for file ‘Rcpi/DESCRIPTION’ ... OK
* preparing ‘Rcpi’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘Rcpi’ ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
Error : .onLoad failed in loadNamespace() for 'rcdk', details:
  call: fun(libname, pkgname)
  error: 
=================
=================
This version of rCDK uses a CDK library that requires Java 1.8 or greater.

Please install Java 1.8 and let R know which Java to use by running the config tool:

sudo R CMD javareconf

Then you will need to re-install rJava.

# re install fromfrom R
# install.packages('rJava', type='source')

=================
=================
         
ERROR: lazy loading failed for package ‘Rcpi’
* removing ‘/private/tmp/Rtmpj1EsNf/Rinstb47c4f883299/Rcpi’
      -----------------------------------
ERROR: package installation failed