Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H  I  J  K  L  M  N  O  P  Q [R] S  T  U  V  W  X  Y  Z 

BioC 3.3: CHECK report for RGSEA on moscato2

This page was generated on 2016-10-13 12:52:45 -0700 (Thu, 13 Oct 2016).

Package 970/1210HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RGSEA 1.6.2
Chengcheng Ma
Snapshot Date: 2016-10-12 17:20:15 -0700 (Wed, 12 Oct 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_3/madman/Rpacks/RGSEA
Last Changed Rev: 117513 / Revision: 122332
Last Changed Date: 2016-05-15 13:18:19 -0700 (Sun, 15 May 2016)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: RGSEA
Version: 1.6.2
Command: rm -rf RGSEA.buildbin-libdir RGSEA.Rcheck && mkdir RGSEA.buildbin-libdir RGSEA.Rcheck && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=RGSEA.buildbin-libdir RGSEA_1.6.2.tar.gz >RGSEA.Rcheck\00install.out 2>&1 && cp RGSEA.Rcheck\00install.out RGSEA-install.out && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=RGSEA.buildbin-libdir --install="check:RGSEA-install.out" --force-multiarch --no-vignettes --timings RGSEA_1.6.2.tar.gz
StartedAt: 2016-10-13 08:09:27 -0700 (Thu, 13 Oct 2016)
EndedAt: 2016-10-13 08:11:01 -0700 (Thu, 13 Oct 2016)
EllapsedTime: 93.9 seconds
RetCode: 0
Status:  OK  
CheckDir: RGSEA.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf RGSEA.buildbin-libdir RGSEA.Rcheck && mkdir RGSEA.buildbin-libdir RGSEA.Rcheck && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=RGSEA.buildbin-libdir RGSEA_1.6.2.tar.gz >RGSEA.Rcheck\00install.out 2>&1 && cp RGSEA.Rcheck\00install.out RGSEA-install.out  && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=RGSEA.buildbin-libdir --install="check:RGSEA-install.out" --force-multiarch --no-vignettes --timings RGSEA_1.6.2.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'E:/biocbld/bbs-3.3-bioc/meat/RGSEA.Rcheck'
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'RGSEA/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'RGSEA' version '1.6.2'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'RGSEA' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'runTests.R'
 OK
** running tests for arch 'x64' ...
  Running 'runTests.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

RGSEA.Rcheck/00install.out:


install for i386

* installing *source* package 'RGSEA' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'RGSEA' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'RGSEA' as RGSEA_1.6.2.zip
* DONE (RGSEA)

RGSEA.Rcheck/examples_i386/RGSEA-Ex.timings:

nameusersystemelapsed
RGSEA-package000
RGSEAfix000
RGSEApredict000
RGSEAsd000
cmap0.20.00.2
e10.140.000.14
e20.140.000.14

RGSEA.Rcheck/examples_x64/RGSEA-Ex.timings:

nameusersystemelapsed
RGSEA-package000
RGSEAfix000
RGSEApredict000
RGSEAsd000
cmap0.120.020.14
e10.080.000.07
e20.10.00.1