GSAR 1.6.0
Yasir Rahmatallah , Galina Glazko
| Snapshot Date: 2016-10-12 17:20:15 -0700 (Wed, 12 Oct 2016) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_3/madman/Rpacks/GSAR | | Last Changed Rev: 117079 / Revision: 122332 | | Last Changed Date: 2016-05-03 14:20:18 -0700 (Tue, 03 May 2016) |
| zin2 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | OK | |  |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | [ OK ] | OK | |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | OK | OK | |
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### Running command:
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### rm -rf GSAR.buildbin-libdir GSAR.Rcheck && mkdir GSAR.buildbin-libdir GSAR.Rcheck && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=GSAR.buildbin-libdir GSAR_1.6.0.tar.gz >GSAR.Rcheck\00install.out 2>&1 && cp GSAR.Rcheck\00install.out GSAR-install.out && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=GSAR.buildbin-libdir --install="check:GSAR-install.out" --force-multiarch --no-vignettes --timings GSAR_1.6.0.tar.gz
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* using log directory 'E:/biocbld/bbs-3.3-bioc/meat/GSAR.Rcheck'
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'GSAR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'GSAR' version '1.6.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'GSAR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
GSNCAtest: no visible global function definition for 'cor'
KStest: no visible global function definition for 'dist'
RKStest: no visible global function definition for 'dist'
WWtest: no visible global function definition for 'dist'
WWtest: no visible binding for global variable 'sd'
findMST2: no visible global function definition for 'cor'
plotMST2.pathway: no visible global function definition for 'cor'
plotMST2.pathway: no visible global function definition for 'par'
plotMST2.pathway: no visible global function definition for 'plot'
plotMST2.pathway: no visible global function definition for 'title'
plotMST2.pathway: no visible global function definition for 'legend'
plotMST2.pathway: no visible global function definition for 'mtext'
Undefined global functions or variables:
cor dist legend mtext par plot sd title
Consider adding
importFrom("graphics", "legend", "mtext", "par", "plot", "title")
importFrom("stats", "cor", "dist", "sd")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
WWtest 13.76 0 13.76
GSNCAtest 2.87 0 6.68
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
WWtest 18.14 0.01 18.16
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'E:/biocbld/bbs-3.3-bioc/meat/GSAR.Rcheck/00check.log'
for details.
install for i386
* installing *source* package 'GSAR' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'GSAR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GSAR' as GSAR_1.6.0.zip
* DONE (GSAR)