EBImage 4.14.2
Andrzej Oleś
| Snapshot Date: 2016-10-12 17:20:15 -0700 (Wed, 12 Oct 2016) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_3/madman/Rpacks/EBImage | | Last Changed Rev: 117513 / Revision: 122332 | | Last Changed Date: 2016-05-15 13:18:19 -0700 (Sun, 15 May 2016) |
| zin2 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | OK | OK | OK | |  |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | [ OK ] | OK | OK | OK | |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | OK | OK | |
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### Running command:
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### rm -rf EBImage.buildbin-libdir && mkdir EBImage.buildbin-libdir && C:\cygwin\bin\curl.exe -O http://zin2/BBS/3.3/bioc/src/contrib/EBImage_4.14.2.tar.gz && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --library=EBImage.buildbin-libdir --merge-multiarch EBImage_4.14.2.tar.gz && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL EBImage_4.14.2.zip && rm EBImage_4.14.2.tar.gz EBImage_4.14.2.zip
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install for i386
* installing *source* package 'EBImage' ...
** libs
C:/Rtools/mingw_32/bin/gcc -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I"c:/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c EBImage.c -o EBImage.o
C:/Rtools/mingw_32/bin/gcc -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I"c:/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c distmap.c -o distmap.o
C:/Rtools/mingw_32/bin/gcc -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I"c:/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c drawCircle.c -o drawCircle.o
C:/Rtools/mingw_32/bin/g++ -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I"c:/local323/include" -O2 -Wall -mtune=core2 -c floodFill.cpp -o floodFill.o
C:/Rtools/mingw_32/bin/gcc -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I"c:/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c haralick.c -o haralick.o
C:/Rtools/mingw_32/bin/gcc -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I"c:/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c medianFilter.c -o medianFilter.o
C:/Rtools/mingw_32/bin/gcc -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I"c:/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c morphology.c -o morphology.o
morphology.c: In function 'compute_lookup_table_for_line_dilate':
morphology.c:59:7: warning: statement with no effect [-Wunused-value]
for (i; i < 0; ++i) {
^
morphology.c:62:7: warning: statement with no effect [-Wunused-value]
for (i; i < maxX; ++i) {
^
morphology.c:66:7: warning: statement with no effect [-Wunused-value]
for (i; i < size.x + set->maxXoffset; ++i) {
^
morphology.c: In function 'compute_lookup_table_for_line_erode':
morphology.c:90:5: warning: statement with no effect [-Wunused-value]
for (i; i < 0; ++i) {
^
morphology.c:93:5: warning: statement with no effect [-Wunused-value]
for (i; i < maxX; ++i) {
^
morphology.c:97:5: warning: statement with no effect [-Wunused-value]
for (i; i < size.x + set->maxXoffset; ++i) {
^
C:/Rtools/mingw_32/bin/gcc -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I"c:/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c nativeRaster.c -o nativeRaster.o
nativeRaster.c: In function 'nativeRaster':
nativeRaster.c:38:7: warning: pointer targets in assignment differ in signedness [-Wpointer-sign]
out = INTEGER(res);
^
C:/Rtools/mingw_32/bin/gcc -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I"c:/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c normalize.c -o normalize.o
C:/Rtools/mingw_32/bin/gcc -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I"c:/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c objects.c -o objects.o
In file included from objects.h:5:0,
from objects.c:1:
objects.c: In function 'stackObjects':
E:/biocbld/BBS-3˜1.3-B/R/include/Rdefines.h:148:28: warning: 'dim' may be used uninitialized in this function [-Wmaybe-uninitialized]
#define SET_DIM(x, n) Rf_setAttrib(x, R_DimSymbol, n)
^
objects.c:171:22: note: 'dim' was declared here
SEXP res, st=NULL, dim, xys;
^
C:/Rtools/mingw_32/bin/gcc -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I"c:/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c ocontour.c -o ocontour.o
C:/Rtools/mingw_32/bin/g++ -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I"c:/local323/include" -O2 -Wall -mtune=core2 -c propagate.cpp -o propagate.o
C:/Rtools/mingw_32/bin/gcc -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I"c:/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c spatial.c -o spatial.o
C:/Rtools/mingw_32/bin/gcc -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I"c:/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c thresh.c -o thresh.o
C:/Rtools/mingw_32/bin/gcc -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I"c:/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c tile.c -o tile.o
C:/Rtools/mingw_32/bin/gcc -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I"c:/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c tools.c -o tools.o
C:/Rtools/mingw_32/bin/g++ -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I"c:/local323/include" -O2 -Wall -mtune=core2 -c watershed.cpp -o watershed.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o EBImage.dll tmp.def EBImage.o distmap.o drawCircle.o floodFill.o haralick.o medianFilter.o morphology.o nativeRaster.o normalize.o objects.o ocontour.o propagate.o spatial.o thresh.o tile.o tools.o watershed.o -Lc:/local323/lib/i386 -Lc:/local323/lib -LE:/biocbld/BBS-3˜1.3-B/R/bin/i386 -lR
installing to E:/biocbld/bbs-3.3-bioc/meat/EBImage.buildbin-libdir/EBImage/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'EBImage' ...
** libs
C:/Rtools/mingw_64/bin/gcc -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I"c:/local323/include" -O2 -Wall -std=gnu99 -mtune=core2 -c EBImage.c -o EBImage.o
C:/Rtools/mingw_64/bin/gcc -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I"c:/local323/include" -O2 -Wall -std=gnu99 -mtune=core2 -c distmap.c -o distmap.o
C:/Rtools/mingw_64/bin/gcc -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I"c:/local323/include" -O2 -Wall -std=gnu99 -mtune=core2 -c drawCircle.c -o drawCircle.o
C:/Rtools/mingw_64/bin/g++ -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I"c:/local323/include" -O2 -Wall -mtune=core2 -c floodFill.cpp -o floodFill.o
C:/Rtools/mingw_64/bin/gcc -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I"c:/local323/include" -O2 -Wall -std=gnu99 -mtune=core2 -c haralick.c -o haralick.o
C:/Rtools/mingw_64/bin/gcc -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I"c:/local323/include" -O2 -Wall -std=gnu99 -mtune=core2 -c medianFilter.c -o medianFilter.o
C:/Rtools/mingw_64/bin/gcc -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I"c:/local323/include" -O2 -Wall -std=gnu99 -mtune=core2 -c morphology.c -o morphology.o
morphology.c: In function 'compute_lookup_table_for_line_dilate':
morphology.c:59:7: warning: statement with no effect [-Wunused-value]
for (i; i < 0; ++i) {
^
morphology.c:62:7: warning: statement with no effect [-Wunused-value]
for (i; i < maxX; ++i) {
^
morphology.c:66:7: warning: statement with no effect [-Wunused-value]
for (i; i < size.x + set->maxXoffset; ++i) {
^
morphology.c: In function 'compute_lookup_table_for_line_erode':
morphology.c:90:5: warning: statement with no effect [-Wunused-value]
for (i; i < 0; ++i) {
^
morphology.c:93:5: warning: statement with no effect [-Wunused-value]
for (i; i < maxX; ++i) {
^
morphology.c:97:5: warning: statement with no effect [-Wunused-value]
for (i; i < size.x + set->maxXoffset; ++i) {
^
C:/Rtools/mingw_64/bin/gcc -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I"c:/local323/include" -O2 -Wall -std=gnu99 -mtune=core2 -c nativeRaster.c -o nativeRaster.o
nativeRaster.c: In function 'nativeRaster':
nativeRaster.c:38:7: warning: pointer targets in assignment differ in signedness [-Wpointer-sign]
out = INTEGER(res);
^
C:/Rtools/mingw_64/bin/gcc -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I"c:/local323/include" -O2 -Wall -std=gnu99 -mtune=core2 -c normalize.c -o normalize.o
C:/Rtools/mingw_64/bin/gcc -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I"c:/local323/include" -O2 -Wall -std=gnu99 -mtune=core2 -c objects.c -o objects.o
In file included from objects.h:5:0,
from objects.c:1:
objects.c: In function 'stackObjects':
E:/biocbld/BBS-3˜1.3-B/R/include/Rdefines.h:148:28: warning: 'dim' may be used uninitialized in this function [-Wmaybe-uninitialized]
#define SET_DIM(x, n) Rf_setAttrib(x, R_DimSymbol, n)
^
objects.c:171:22: note: 'dim' was declared here
SEXP res, st=NULL, dim, xys;
^
C:/Rtools/mingw_64/bin/gcc -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I"c:/local323/include" -O2 -Wall -std=gnu99 -mtune=core2 -c ocontour.c -o ocontour.o
C:/Rtools/mingw_64/bin/g++ -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I"c:/local323/include" -O2 -Wall -mtune=core2 -c propagate.cpp -o propagate.o
C:/Rtools/mingw_64/bin/gcc -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I"c:/local323/include" -O2 -Wall -std=gnu99 -mtune=core2 -c spatial.c -o spatial.o
C:/Rtools/mingw_64/bin/gcc -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I"c:/local323/include" -O2 -Wall -std=gnu99 -mtune=core2 -c thresh.c -o thresh.o
C:/Rtools/mingw_64/bin/gcc -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I"c:/local323/include" -O2 -Wall -std=gnu99 -mtune=core2 -c tile.c -o tile.o
C:/Rtools/mingw_64/bin/gcc -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I"c:/local323/include" -O2 -Wall -std=gnu99 -mtune=core2 -c tools.c -o tools.o
C:/Rtools/mingw_64/bin/g++ -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -I"c:/local323/include" -O2 -Wall -mtune=core2 -c watershed.cpp -o watershed.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o EBImage.dll tmp.def EBImage.o distmap.o drawCircle.o floodFill.o haralick.o medianFilter.o morphology.o nativeRaster.o normalize.o objects.o ocontour.o propagate.o spatial.o thresh.o tile.o tools.o watershed.o -Lc:/local323/lib/x64 -Lc:/local323/lib -LE:/biocbld/BBS-3˜1.3-B/R/bin/x64 -lR
installing to E:/biocbld/bbs-3.3-bioc/meat/EBImage.buildbin-libdir/EBImage/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'EBImage' as EBImage_4.14.2.zip
* DONE (EBImage)
* installing to library 'E:/biocbld/bbs-3.3-bioc/R/library'
package 'EBImage' successfully unpacked and MD5 sums checked