Back to the "Multiple platform build/check report" A  B  C [D] E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

BioC 3.3: CHECK report for DAPAR on zin2

This page was generated on 2016-10-13 12:46:03 -0700 (Thu, 13 Oct 2016).

Package 271/1210HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DAPAR 1.4.8
Samuel Wieczorek
Snapshot Date: 2016-10-12 17:20:15 -0700 (Wed, 12 Oct 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_3/madman/Rpacks/DAPAR
Last Changed Rev: 120848 / Revision: 122332
Last Changed Date: 2016-09-12 00:47:39 -0700 (Mon, 12 Sep 2016)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  ERROR  OK 
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: DAPAR
Version: 1.4.8
Command: /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD check --no-vignettes --timings DAPAR_1.4.8.tar.gz
StartedAt: 2016-10-13 01:06:34 -0700 (Thu, 13 Oct 2016)
EndedAt: 2016-10-13 01:09:30 -0700 (Thu, 13 Oct 2016)
EllapsedTime: 176.4 seconds
RetCode: 0
Status:  OK 
CheckDir: DAPAR.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD check --no-vignettes --timings DAPAR_1.4.8.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.3-bioc/meat/DAPAR.Rcheck’
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘DAPAR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘DAPAR’ version ‘1.4.8’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘DAPAR’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

DAPAR.Rcheck/00install.out:

* installing *source* package ‘DAPAR’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (DAPAR)

DAPAR.Rcheck/DAPAR-Ex.timings:

nameusersystemelapsed
BuildAdjacencyMatrix0.430.200.63
BuildColumnToProteinDataset0.3050.0070.313
BuildSparseAdjacencyMatrix0.1360.0520.188
CountPep0.4360.1830.620
GraphPepProt0.3320.0000.331
MeanPeptides1.5810.6581.265
MeanPeptidesSpeedUp0.0730.0210.099
SumPeptides0.6020.5170.892
SumPeptidesSpeedUp0.0390.0360.080
TopnPeptides2.9431.3591.429
boxPlotD0.0480.0000.048
compareNormalizationD0.0520.0000.053
corrMatrixD0.2690.0040.272
createMSnset0.1560.0030.159
deleteLinesFromIndices0.0330.0000.032
densityPlotD0.0530.0000.054
diffAna0.2170.0070.226
diffAnaComputeFDR0.0790.0030.083
diffAnaGetSignificant0.2950.0120.307
diffAnaLimma0.0330.0000.033
diffAnaSave0.0330.0000.033
diffAnaVolcanoplot0.040.000.04
diffAnaWelch0.0320.0000.033
getIndicesConditions0.0280.0040.032
getIndicesOfLinesToRemove0.0280.0040.033
getNumberOf0.0320.0000.033
getNumberOfEmptyLines0.0340.0000.034
getPaletteForLabels0.0320.0000.032
getPaletteForReplicates0.0320.0000.031
getPourcentageOfMV0.0330.0000.036
getProcessingInfo0.0310.0000.031
getProteinsStats0.0780.0000.078
heatmap.DAPAR0.2610.0000.262
heatmapD0.2760.0200.298
limmaCompleteTest0.0610.0000.061
mvFilter0.0640.0000.063
mvFilterFromIndices0.0280.0040.031
mvFilterGetIndices0.0360.0040.041
mvHisto0.0760.0000.076
mvImage0.2130.0000.216
mvImputation0.0530.0270.080
mvPerLinesHisto0.0470.0000.047
mvPerLinesHistoPerCondition0.0370.0000.037
mvTypePlot0.1090.0000.108
normalizeD0.0520.0110.067
pepAgregate0.0560.1350.190
pepAgregateSpeedUp0.0960.0440.143
proportionConRev0.0670.0040.071
removeLines0.0340.0050.037
topMaxUsingPartialSortIndices0.0010.0000.001
varianceDistD0.0280.0030.033
wrapper.boxPlotD0.0380.0000.039
wrapper.compareNormalizationD0.0490.0000.049
wrapper.corrMatrixD0.2080.0040.212
wrapper.densityPlotD0.0570.0000.056
wrapper.diffAnaLimma0.0330.0000.034
wrapper.diffAnaWelch0.0330.0000.033
wrapper.heatmapD0.2640.0000.264
wrapper.mvHisto0.0700.0000.069
wrapper.mvImage0.2120.0030.216
wrapper.mvImputation0.0510.0000.051
wrapper.mvPerLinesHisto0.0460.0000.046
wrapper.mvPerLinesHistoPerCondition0.0360.0000.037
wrapper.mvTypePlot0.1020.0000.101
wrapper.normalizeD0.0330.0040.037
wrapper.varianceDistD0.2060.0000.210
wrapperCalibrationPlot0.0330.0000.032
writeMSnsetToExcel1.5880.0931.339