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This page was generated on 2024-07-16 11:40 -0400 (Tue, 16 Jul 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4677
palomino6Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4416
lconwaymacOS 12.7.1 Montereyx86_644.4.1 (2024-06-14) -- "Race for Your Life" 4444
kjohnson3macOS 13.6.5 Venturaarm644.4.1 (2024-06-14) -- "Race for Your Life" 4393
palomino8Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4373
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Package 856/2243HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GlobalAncova 4.23.0  (landing page)
Manuela Hummel
Snapshot Date: 2024-07-15 14:00 -0400 (Mon, 15 Jul 2024)
git_url: https://git.bioconductor.org/packages/GlobalAncova
git_branch: devel
git_last_commit: bac6c17
git_last_commit_date: 2024-04-30 10:14:34 -0400 (Tue, 30 Apr 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino6Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.6.5 Ventura / arm64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
palomino8Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  


CHECK results for GlobalAncova on palomino6

To the developers/maintainers of the GlobalAncova package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GlobalAncova.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: GlobalAncova
Version: 4.23.0
Command: C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:GlobalAncova.install-out.txt --library=C:\Users\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings GlobalAncova_4.23.0.tar.gz
StartedAt: 2024-07-16 00:29:54 -0400 (Tue, 16 Jul 2024)
EndedAt: 2024-07-16 00:32:56 -0400 (Tue, 16 Jul 2024)
EllapsedTime: 181.7 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: GlobalAncova.Rcheck
Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:GlobalAncova.install-out.txt --library=C:\Users\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings GlobalAncova_4.23.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.20-bioc/meat/GlobalAncova.Rcheck'
* using R version 4.4.1 (2024-06-14 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'GlobalAncova/DESCRIPTION' ... OK
* this is package 'GlobalAncova' version '4.23.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'GlobalAncova' can be installed ... WARNING
Found the following significant warnings:
  GlobalAncova.c:33:53: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long long unsigned int' [-Wformat=]
  GlobalAncova.c:38:53: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long long unsigned int' [-Wformat=]
  GlobalAncova.c:43:53: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long long unsigned int' [-Wformat=]
  GlobalAncova.c:48:53: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long long unsigned int' [-Wformat=]
  GlobalAncova.c:88:54: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long long unsigned int' [-Wformat=]
  GlobalAncova.c:100:56: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long long unsigned int' [-Wformat=]
  GlobalAncova.c:148:48: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long long unsigned int' [-Wformat=]
  GlobalAncova.c:153:48: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long long unsigned int' [-Wformat=]
  GlobalAncova.c:158:48: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long long unsigned int' [-Wformat=]
  GlobalAncova.c:163:48: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long long unsigned int' [-Wformat=]
  GlobalAncova.c:170:50: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long long unsigned int' [-Wformat=]
  GlobalAncova.c:250:48: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long long unsigned int' [-Wformat=]
  GlobalAncova.c:255:48: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long long unsigned int' [-Wformat=]
  GlobalAncova.c:260:48: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long long unsigned int' [-Wformat=]
  GlobalAncova.c:265:48: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long long unsigned int' [-Wformat=]
  GlobalAncova.c:272:50: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long long unsigned int' [-Wformat=]
See 'C:/Users/biocbuild/bbs-3.20-bioc/meat/GlobalAncova.Rcheck/00install.out' for details.
* used C compiler: 'gcc.exe (GCC) 13.2.0'
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: 'methods'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.nPerms: no visible global function definition for 'terms'
.onAttach: no visible global function definition for 'addVigs2WinMenu'
.pAsymptotic: no visible global function definition for 'qnorm'
.pAsymptotic: no visible global function definition for 'pchisq'
.pGAapprox: no visible global function definition for 'model.matrix'
GABroad: no visible global function definition for 'is'
GABroad: no visible binding for global variable 'collectionType'
GABroad: no visible binding for global variable 'geneIds'
GABroad: no visible global function definition for 'p.adjust'
GAGO: no visible binding for global variable 'Ontology'
GAGO: no visible global function definition for 'is'
GAGO: no visible global function definition for 'p.adjust'
GAGO : <anonymous>: no visible global function definition for 'is'
Gsquared: no visible global function definition for 'glm'
Gsquared: no visible binding for global variable 'multinomial'
Gsquared: no visible global function definition for 'pchisq'
Gsquared: no visible global function definition for 'qchisq'
Plot.all: no visible global function definition for 'par'
Plot.all: no visible global function definition for 'layout'
Plot.features: no visible global function definition for 'barplot'
Plot.sequential: no visible global function definition for 'par'
Plot.sequential: no visible global function definition for 'barplot'
Plot.sequential: no visible global function definition for 'legend'
Plot.sequential: no visible global function definition for 'axis'
Tperm.catcat: no visible global function definition for 'pchisq'
Tperm.catcat: no visible global function definition for 'qchisq'
coldend: no visible global function definition for 'is.leaf'
decomp.ssq: no visible global function definition for 'model.matrix'
decomp.ssq: no visible global function definition for 'as.formula'
decomp.ssq: no visible global function definition for 'anova'
decomp.ssq: no visible global function definition for 'lm'
decomp.ssq: no visible global function definition for 'pf'
decomp.ssq.genewise: no visible global function definition for
  'model.matrix'
decomp.ssq.genewise: no visible global function definition for
  'as.formula'
decomp.ssq.genewise: no visible global function definition for 'anova'
decomp.ssq.genewise: no visible global function definition for 'lm'
decomp.ssq.genewise: no visible global function definition for 'pf'
devtest: no visible global function definition for 'formula'
devtest: no visible global function definition for 'na.omit'
devtest: no visible global function definition for 'pchisq'
devtest: no visible global function definition for 'qchisq'
expr.test: no visible global function definition for 'terms'
expr.test: no visible global function definition for 'model.matrix'
gGAteststats: no visible global function definition for 'terms'
gGAteststats: no visible global function definition for
  'complete.cases'
gGAteststats : <anonymous>: no visible global function definition for
  'na.omit'
gGAteststats: no visible global function definition for 'model.matrix'
gGlobalAncova.hierarchical: no visible global function definition for
  'new'
getdev: no visible binding for global variable 'nobs'
getdev: no visible global function definition for 'glm.fit'
getdev: no visible global function definition for 'binomial'
group2formula: no visible global function definition for 'as.formula'
hiertest: no visible global function definition for 'na.omit'
horizontal.bars: no visible global function definition for 'plot.new'
horizontal.bars: no visible global function definition for 'strwidth'
horizontal.bars: no visible global function definition for 'par'
horizontal.bars: no visible global function definition for 'rect'
horizontal.bars: no visible global function definition for 'box'
horizontal.bars: no visible global function definition for 'axis'
my.colors: no visible global function definition for 'rainbow'
my.colors: no visible global function definition for 'rgb'
pair.compare: no visible global function definition for 'model.matrix'
plot.ssq.all: no visible global function definition for 'par'
plot.ssq.all: no visible global function definition for 'barplot'
plot.ssq.all: no visible global function definition for 'axis'
plot.ssq.genewise2: no visible global function definition for 'par'
plot.ssq.genewise2: no visible global function definition for 'barplot'
plot.ssq.genewise2: no visible global function definition for 'legend'
plot.ssq.genewise2: no visible global function definition for 'axis'
plotallgenes: no visible global function definition for 'par'
plotallgenes: no visible global function definition for 'barplot'
plotallgenes: no visible global function definition for 'lines'
plotgenes: no visible global function definition for 'palette'
plotgenes: no visible global function definition for 'rgb'
plotgenes: no visible global function definition for 'lines'
plotgenes: no visible global function definition for 'legend'
plotgenes2: no visible global function definition for 'par'
plotgenes2: no visible global function definition for 'barplot'
plotgenes2: no visible global function definition for 'axis'
plotgenes2: no visible global function definition for 'lines'
plotgenes2: no visible global function definition for 'rect'
plotsubjects: no visible global function definition for 'palette'
plotsubjects: no visible global function definition for 'rgb'
plotsubjects: no visible global function definition for 'legend'
reduSQ: no visible global function definition for 'model.matrix'
GlobalAncova.closed,matrix-list-formula-missing-ANY-missing-missing-character:
  no visible global function definition for 'model.matrix'
GlobalAncova,matrix-formula-missing-ANY-missing-missing-character: no
  visible global function definition for 'model.matrix'
Plot.genes,matrix-formula-missing-ANY-missing-missing-character: no
  visible global function definition for 'model.matrix'
Plot.subjects,matrix-formula-missing-ANY-missing-missing-character: no
  visible global function definition for 'model.matrix'
pGAapprox,matrix-formula-missing-ANY-missing-missing-character: no
  visible global function definition for 'model.matrix'
Undefined global functions or variables:
  Ontology addVigs2WinMenu anova as.formula axis barplot binomial box
  collectionType complete.cases formula geneIds glm glm.fit is is.leaf
  layout legend lines lm model.matrix multinomial na.omit new nobs
  p.adjust palette par pchisq pf plot.new qchisq qnorm rainbow rect rgb
  strwidth terms
Consider adding
  importFrom("grDevices", "palette", "rainbow", "rgb")
  importFrom("graphics", "axis", "barplot", "box", "layout", "legend",
             "lines", "par", "plot.new", "rect", "strwidth")
  importFrom("methods", "is", "new")
  importFrom("stats", "anova", "as.formula", "binomial",
             "complete.cases", "formula", "glm", "glm.fit", "is.leaf",
             "lm", "model.matrix", "na.omit", "nobs", "p.adjust",
             "pchisq", "pf", "qchisq", "qnorm", "terms")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files for x64 is not available
File 'C:/Users/biocbuild/bbs-3.20-bioc/R/library/GlobalAncova/libs/x64/GlobalAncova.dll':
  Found '_exit', possibly from '_exit' (C)
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
  Found 'putchar', possibly from 'putchar' (C)
  Found 'rand', possibly from 'rand' (C)
  Found 'srand', possibly from 'srand' (C)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf. The detected symbols are linked into
the code but might come from libraries and not actually be called.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking sizes of PDF files under 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 3 NOTEs
See
  'C:/Users/biocbuild/bbs-3.20-bioc/meat/GlobalAncova.Rcheck/00check.log'
for details.


Installation output

GlobalAncova.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL GlobalAncova
###
##############################################################################
##############################################################################


* installing to library 'C:/Users/biocbuild/bbs-3.20-bioc/R/library'
* installing *source* package 'GlobalAncova' ...
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 13.2.0'
gcc  -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c GlobalAncova.c -o GlobalAncova.o
GlobalAncova.c: In function 'row_orth2d':
GlobalAncova.c:33:53: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long long unsigned int' [-Wformat=]
   33 |    { error("Warning in row_orth2d: Memory block of %d bytes unavailable",
      |                                                    ~^
      |                                                     |
      |                                                     int
      |                                                    %lld
   34 |       (*sD)*(*sD)*sizeof(double));
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~                     
      |                  |
      |                  long long unsigned int
GlobalAncova.c:38:53: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long long unsigned int' [-Wformat=]
   38 |    { error("Warning in row_orth2d: Memory block of %d bytes unavailable",
      |                                                    ~^
      |                                                     |
      |                                                     int
      |                                                    %lld
   39 |       (*sD)*(*sD)*sizeof(double) );
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~                     
      |                  |
      |                  long long unsigned int
GlobalAncova.c:43:53: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long long unsigned int' [-Wformat=]
   43 |    { error("Warning in row_orth2d: Memory block of %d bytes unavailable",
      |                                                    ~^
      |                                                     |
      |                                                     int
      |                                                    %lld
   44 |       (*zD)*(*sD)*sizeof(double)  );
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~                     
      |                  |
      |                  long long unsigned int
GlobalAncova.c:48:53: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long long unsigned int' [-Wformat=]
   48 |    { error("Warning in row_orth2d: Memory block of %d bytes unavailable",
      |                                                    ~^
      |                                                     |
      |                                                     int
      |                                                    %lld
   49 |       (*zD)*(*zD)*sizeof(double) );
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~                     
      |                  |
      |                  long long unsigned int
GlobalAncova.c: In function 'genewiseGA':
GlobalAncova.c:88:54: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long long unsigned int' [-Wformat=]
   88 |     { error("Warning in genewiseGA: Memory block of %d bytes unavailable",
      |                                                     ~^
      |                                                      |
      |                                                      int
      |                                                     %lld
   89 |       (*zxx)*(*zD_full) * sizeof(double) );
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~              
      |                         |
      |                         long long unsigned int
GlobalAncova.c:100:56: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long long unsigned int' [-Wformat=]
  100 |       { error("Warning in genewiseGA: Memory block of %d bytes unavailable",
      |                                                       ~^
      |                                                        |
      |                                                        int
      |                                                       %lld
  101 |         (*zxx)*(*zD_red) * sizeof(double) );
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~               
      |                          |
      |                          long long unsigned int
GlobalAncova.c: In function 'permut_withFperm':
GlobalAncova.c:148:48: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long long unsigned int' [-Wformat=]
  148 |   { error("Warning in permut: Memory block of %d bytes unavailable",
      |                                               ~^
      |                                                |
      |                                                int
      |                                               %lld
  149 |      (*zrr) * sizeof(double) );
      |      ~~~~~~~~~~~~~~~~~~~~~~~                    
      |             |
      |             long long unsigned int
GlobalAncova.c:153:48: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long long unsigned int' [-Wformat=]
  153 |   { error("Warning in permut: Memory block of %d bytes unavailable",
      |                                               ~^
      |                                                |
      |                                                int
      |                                               %lld
  154 |     (*zrr) * sizeof(double));
      |     ~~~~~~~~~~~~~~~~~~~~~~~                     
      |            |
      |            long long unsigned int
GlobalAncova.c:158:48: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long long unsigned int' [-Wformat=]
  158 |   { error("Warning in permut: Memory block of %d bytes unavailable",
      |                                               ~^
      |                                                |
      |                                                int
      |                                               %lld
  159 |     (*n_test_genes) * sizeof(double));
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~            
      |                     |
      |                     long long unsigned int
GlobalAncova.c:163:48: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long long unsigned int' [-Wformat=]
  163 |   { error("Warning in permut: Memory block of %d bytes unavailable",
      |                                               ~^
      |                                                |
      |                                                int
      |                                               %lld
  164 |     (*sD_full)*(*sD_full) * sizeof(double));
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~      
      |                           |
      |                           long long unsigned int
GlobalAncova.c:170:50: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long long unsigned int' [-Wformat=]
  170 |     { error("Warning in permut: Memory block of %d bytes unavailable",
      |                                                 ~^
      |                                                  |
      |                                                  int
      |                                                 %lld
  171 |       (*N_Subjects) * sizeof(int));
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~                 
      |                     |
      |                     long long unsigned int
GlobalAncova.c: In function 'permut':
GlobalAncova.c:250:48: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long long unsigned int' [-Wformat=]
  250 |   { error("Warning in permut: Memory block of %d bytes unavailable",
      |                                               ~^
      |                                                |
      |                                                int
      |                                               %lld
  251 |      (*zrr) * sizeof(double) );
      |      ~~~~~~~~~~~~~~~~~~~~~~~                    
      |             |
      |             long long unsigned int
GlobalAncova.c:255:48: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long long unsigned int' [-Wformat=]
  255 |   { error("Warning in permut: Memory block of %d bytes unavailable",
      |                                               ~^
      |                                                |
      |                                                int
      |                                               %lld
  256 |     (*zrr) * sizeof(double));
      |     ~~~~~~~~~~~~~~~~~~~~~~~                     
      |            |
      |            long long unsigned int
GlobalAncova.c:260:48: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long long unsigned int' [-Wformat=]
  260 |   { error("Warning in permut: Memory block of %d bytes unavailable",
      |                                               ~^
      |                                                |
      |                                                int
      |                                               %lld
  261 |     (*n_test_genes) * sizeof(double));
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~            
      |                     |
      |                     long long unsigned int
GlobalAncova.c:265:48: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long long unsigned int' [-Wformat=]
  265 |   { error("Warning in permut: Memory block of %d bytes unavailable",
      |                                               ~^
      |                                                |
      |                                                int
      |                                               %lld
  266 |     (*sD_full)*(*sD_full) * sizeof(double));
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~      
      |                           |
      |                           long long unsigned int
GlobalAncova.c:272:50: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long long unsigned int' [-Wformat=]
  272 |     { error("Warning in permut: Memory block of %d bytes unavailable",
      |                                                 ~^
      |                                                  |
      |                                                  int
      |                                                 %lld
  273 |       (*N_Subjects) * sizeof(int));
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~                 
      |                     |
      |                     long long unsigned int
GlobalAncova.c: In function 'permut_withFperm':
GlobalAncova.c:177:8: warning: 'ord_perm' may be used uninitialized [-Wmaybe-uninitialized]
  177 |        sample ( ord_perm , N_Subjects )   ;
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
GlobalAncova.c:166:8: note: 'ord_perm' was declared here
  166 |   int *ord_perm ;
      |        ^~~~~~~~
GlobalAncova.c: In function 'permut':
GlobalAncova.c:280:8: warning: 'ord_perm' may be used uninitialized [-Wmaybe-uninitialized]
  280 |        sample ( ord_perm , N_Subjects )   ;
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
GlobalAncova.c:268:8: note: 'ord_perm' was declared here
  268 |   int *ord_perm ;
      |        ^~~~~~~~
gcc  -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c ludcmp.c -o ludcmp.o
gcc  -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c matrix.c -o matrix.o
gcc -shared -s -static-libgcc -o GlobalAncova.dll tmp.def GlobalAncova.o ludcmp.o matrix.o -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LC:/Users/biocbuild/bbs-3.20-bioc/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.20-bioc/R/library/00LOCK-GlobalAncova/00new/GlobalAncova/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (GlobalAncova)

Tests output


Example timings

GlobalAncova.Rcheck/GlobalAncova-Ex.timings

nameusersystemelapsed
GAhier-class000
GlobalAncova2.280.062.34
GlobalAncova.decomp0.190.000.19
Plot.all0.050.000.04
Plot.features0.020.000.01
Plot.genes0.940.030.97
Plot.sequential0.030.000.03
Plot.subjects0.470.010.49
bindata0.000.020.01
colon.normal000
colon.pheno0.000.000.02
colon.tumour000
gGlobalAncova0.340.020.36
gGlobalAncova.hierarchical3.060.073.14
genesettesting000
pair.compare2.690.142.83
pathways0.010.000.01
phenodata000
vantVeer0.000.020.02