BioC 3.2: CHECK report for xps on oaxaca

Package: xps

Version: 1.30.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings xps_1.30.0.tar.gz

StartedAt: 2016-04-23 05:21:05 -0700 (Sat, 23 Apr 2016)

EndedAt: 2016-04-23 05:23:49 -0700 (Sat, 23 Apr 2016)

EllapsedTime: 163.7 seconds

RetCode: 0

Status:  OK

CheckDir: xps.Rcheck

Warnings: 0

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings xps_1.30.0.tar.gz
###
##############################################################################
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* using log directory ‘/Users/biocbuild/bbs-3.2-bioc/meat/xps.Rcheck’
* using R version 3.2.4 (2016-03-10)
* using platform: x86_64-apple-darwin13.4.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘xps/DESCRIPTION’ ... OK
* this is package ‘xps’ version ‘1.30.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .BBSoptions
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘xps’ can be installed ... [67s/82s] OK
* checking installed package size ... NOTE
  installed size is 10.7Mb
  sub-directories of 1Mb or more:
    doc    2.7Mb
    libs   4.8Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for GNU extensions in Makefiles ... NOTE
GNU make is a SystemRequirements.
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
File ‘/Users/biocbuild/bbs-3.2-bioc/meat/xps.Rcheck/xps/libs/xps.so’:
  Found ‘__ZNSt3__14cerrE’, possibly from ‘std::cerr’ (C++)
  Found ‘__ZNSt3__14coutE’, possibly from ‘std::cout’ (C++)
  Found ‘_printf’, possibly from ‘printf’ (C)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor the system RNG.
The detected symbols are linked into the code but might come from
libraries and not actually be called.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [17s/18s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 4 NOTEs
See
  ‘/Users/biocbuild/bbs-3.2-bioc/meat/xps.Rcheck/00check.log’
for details.

* installing *source* package ‘xps’ ...
checking for gcc... clang
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether clang accepts -g... yes
checking for clang option to accept ANSI C... none needed
checking how to run the C preprocessor... clang -E
checking for gcc... (cached) clang
checking whether we are using the GNU C compiler... (cached) yes
checking whether clang accepts -g... (cached) yes
checking for clang option to accept ANSI C... (cached) none needed
checking for root-config... yes
found ROOT version 5.34/18 in directory /usr/local/root
** libs
** arch - 
clang++ -I/include -O2 -pipe -Wall -W -Woverloaded-virtual -pthread -stdlib=libc++ -m64 -I/usr/local/root/include/root -c TMLMath.cxx
TMLMath.cxx:46:17: warning: using directive refers to implicitly-defined namespace 'std'
using namespace std;
                ^
TMLMath.cxx:1111:9: warning: 'xmax' macro redefined
#define xmax  2.5327372760800758e+305
        ^
TMLMath.cxx:1062:10: note: previous definition is here
# define xmax  3.745194030963158e306
         ^
TMLMath.cxx:63:15: warning: unused variable 'kCS' [-Wunused-const-variable]
const Bool_t  kCS  = 0;
              ^
3 warnings generated.
clang++ -I/include -O2 -pipe -Wall -W -Woverloaded-virtual -pthread -stdlib=libc++ -m64 -I/usr/local/root/include/root -c TStat.cxx
TStat.cxx:46:17: warning: using directive refers to implicitly-defined namespace 'std'
using namespace std;
                ^
In file included from TStat.cxx:55:
./TStat.h:332:37: warning: unused parameter 'x' [-Wunused-parameter]
      virtual Double_t Rho(Double_t x)        {return 0;}
                                    ^
./TStat.h:333:37: warning: unused parameter 'x' [-Wunused-parameter]
      virtual Double_t Psi(Double_t x)        {return 0;}
                                    ^
./TStat.h:334:44: warning: unused parameter 'x' [-Wunused-parameter]
      virtual Double_t Derivative(Double_t x) {return 0;}
                                           ^
./TStat.h:335:40: warning: unused parameter 'x' [-Wunused-parameter]
      virtual Double_t Weight(Double_t x)     {return 0;}
                                       ^
5 warnings generated.
clang++ -I/include -O2 -pipe -Wall -W -Woverloaded-virtual -pthread -stdlib=libc++ -m64 -I/usr/local/root/include/root -c StatUtils.cxx
StatUtils.cxx:46:17: warning: using directive refers to implicitly-defined namespace 'std'
using namespace std;
                ^
In file included from StatUtils.cxx:60:
./TStat.h:332:37: warning: unused parameter 'x' [-Wunused-parameter]
      virtual Double_t Rho(Double_t x)        {return 0;}
                                    ^
./TStat.h:333:37: warning: unused parameter 'x' [-Wunused-parameter]
      virtual Double_t Psi(Double_t x)        {return 0;}
                                    ^
./TStat.h:334:44: warning: unused parameter 'x' [-Wunused-parameter]
      virtual Double_t Derivative(Double_t x) {return 0;}
                                           ^
./TStat.h:335:40: warning: unused parameter 'x' [-Wunused-parameter]
      virtual Double_t Weight(Double_t x)     {return 0;}
                                       ^
StatUtils.cxx:242:58: warning: unused parameter 'df' [-Wunused-parameter]
Double_t TUnivariateTest::PValue(Double_t stat, Double_t df)
                                                         ^
StatUtils.cxx:265:58: warning: unused parameter 'df' [-Wunused-parameter]
Double_t TUnivariateTest::PValue(Double_t stat, Double_t df, Double_t se,
                                                         ^
7 warnings generated.
clang++ -I/include -O2 -pipe -Wall -W -Woverloaded-virtual -pthread -stdlib=libc++ -m64 -I/usr/local/root/include/root -c XPSBase.cxx
XPSBase.cxx:88:17: warning: using directive refers to implicitly-defined namespace 'std'
using namespace std;
                ^
In file included from XPSBase.cxx:103:
./XPSBase.h:208:25: warning: 'XTreeInfo::GetOption' hides overloaded virtual function [-Woverloaded-virtual]
      virtual Option_t *GetOption()                      {return fOption.Data();}
                        ^
/usr/local/root/include/root/TObject.h:127:24: note: hidden overloaded virtual function 'TObject::GetOption' declared here: different qualifiers (const vs none)
   virtual Option_t   *GetOption() const { return ""; }
                       ^
2 warnings generated.
clang++ -I/include -O2 -pipe -Wall -W -Woverloaded-virtual -pthread -stdlib=libc++ -m64 -I/usr/local/root/include/root -c XPSUtils.cxx
XPSUtils.cxx:53:17: warning: using directive refers to implicitly-defined namespace 'std'
using namespace std;
                ^
In file included from XPSUtils.cxx:82:
./TStat.h:332:37: warning: unused parameter 'x' [-Wunused-parameter]
      virtual Double_t Rho(Double_t x)        {return 0;}
                                    ^
./TStat.h:333:37: warning: unused parameter 'x' [-Wunused-parameter]
      virtual Double_t Psi(Double_t x)        {return 0;}
                                    ^
./TStat.h:334:44: warning: unused parameter 'x' [-Wunused-parameter]
      virtual Double_t Derivative(Double_t x) {return 0;}
                                           ^
./TStat.h:335:40: warning: unused parameter 'x' [-Wunused-parameter]
      virtual Double_t Weight(Double_t x)     {return 0;}
                                       ^
XPSUtils.cxx:1334:35: warning: unused parameter 'canvasname' [-Wunused-parameter]
Int_t XPlot::DrawTree(const char *canvasname, const char *treename,
                                  ^
XPSUtils.cxx:1334:59: warning: unused parameter 'treename' [-Wunused-parameter]
Int_t XPlot::DrawTree(const char *canvasname, const char *treename,
                                                          ^
XPSUtils.cxx:1335:26: warning: unused parameter 'varexp' [-Wunused-parameter]
             const char *varexp, const char *selection, Option_t *opt)
                         ^
XPSUtils.cxx:1335:46: warning: unused parameter 'selection' [-Wunused-parameter]
             const char *varexp, const char *selection, Option_t *opt)
                                             ^
XPSUtils.cxx:1335:67: warning: unused parameter 'opt' [-Wunused-parameter]
             const char *varexp, const char *selection, Option_t *opt)
                                                                  ^
XPSUtils.cxx:1724:23: warning: unused parameter 'min' [-Wunused-parameter]
             Double_t min, Double_t max)
                      ^
XPSUtils.cxx:1724:37: warning: unused parameter 'max' [-Wunused-parameter]
             Double_t min, Double_t max)
                                    ^
XPSUtils.cxx:2118:31: warning: unused parameter 'n' [-Wunused-parameter]
void XPlot::DrawGraph3D(Int_t n, Double_t *x, Double_t *y, Double_t *z,
                              ^
XPSUtils.cxx:2118:44: warning: unused parameter 'x' [-Wunused-parameter]
void XPlot::DrawGraph3D(Int_t n, Double_t *x, Double_t *y, Double_t *z,
                                           ^
XPSUtils.cxx:2118:57: warning: unused parameter 'y' [-Wunused-parameter]
void XPlot::DrawGraph3D(Int_t n, Double_t *x, Double_t *y, Double_t *z,
                                                        ^
XPSUtils.cxx:2118:70: warning: unused parameter 'z' [-Wunused-parameter]
void XPlot::DrawGraph3D(Int_t n, Double_t *x, Double_t *y, Double_t *z,
                                                                     ^
XPSUtils.cxx:2119:23: warning: unused parameter 'opt' [-Wunused-parameter]
            Option_t *opt)
                      ^
XPSUtils.cxx:2627:43: warning: unused parameter 'index' [-Wunused-parameter]
void XPlot::DrawHist1D(Int_t n, Double_t *index, Double_t *x, Option_t *opt)
                                          ^
XPSUtils.cxx:3080:32: warning: unused parameter 'n' [-Wunused-parameter]
void XPlot::SetFillColor(Int_t n, Int_t *colors, Int_t priority)
                               ^
XPSUtils.cxx:3080:42: warning: unused parameter 'colors' [-Wunused-parameter]
void XPlot::SetFillColor(Int_t n, Int_t *colors, Int_t priority)
                                         ^
XPSUtils.cxx:3080:56: warning: unused parameter 'priority' [-Wunused-parameter]
void XPlot::SetFillColor(Int_t n, Int_t *colors, Int_t priority)
                                                       ^
XPSUtils.cxx:96:14: warning: unused variable 'kCSa' [-Wunused-const-variable]
const Bool_t kCSa = 0;
             ^
22 warnings generated.
clang++ -I/include -O2 -pipe -Wall -W -Woverloaded-virtual -pthread -stdlib=libc++ -m64 -I/usr/local/root/include/root -c XPSSchemes.cxx
XPSSchemes.cxx:63:17: warning: using directive refers to implicitly-defined namespace 'std'
using namespace std;
                ^
In file included from XPSSchemes.cxx:74:
In file included from ./XPSSchemes.h:41:
./XPSBase.h:208:25: warning: 'XTreeInfo::GetOption' hides overloaded virtual function [-Woverloaded-virtual]
      virtual Option_t *GetOption()                      {return fOption.Data();}
                        ^
/usr/local/root/include/root/TObject.h:127:24: note: hidden overloaded virtual function 'TObject::GetOption' declared here: different qualifiers (const vs none)
   virtual Option_t   *GetOption() const { return ""; }
                       ^
XPSSchemes.cxx:10096:34: warning: unused parameter 'index' [-Wunused-parameter]
Int_t XExonChip::LayoutToX(Int_t index)
                                 ^
XPSSchemes.cxx:10107:34: warning: unused parameter 'index' [-Wunused-parameter]
Int_t XExonChip::LayoutToY(Int_t index)
                                 ^
XPSSchemes.cxx:108:13: warning: unused variable 'kNAnnCols' [-Wunused-const-variable]
const Int_t kNAnnCols = 6;
            ^
5 warnings generated.
clang++ -I/include -O2 -pipe -Wall -W -Woverloaded-virtual -pthread -stdlib=libc++ -m64 -I/usr/local/root/include/root -c XPSDataTypes.cxx
XPSDataTypes.cxx:49:17: warning: using directive refers to implicitly-defined namespace 'std'
using namespace std;
                ^
1 warning generated.
clang++ -I/include -O2 -pipe -Wall -W -Woverloaded-virtual -pthread -stdlib=libc++ -m64 -I/usr/local/root/include/root -c XPSProjectHandler.cxx
XPSProjectHandler.cxx:45:17: warning: using directive refers to implicitly-defined namespace 'std'
using namespace std;
                ^
In file included from XPSProjectHandler.cxx:49:
./XPSProjectHandler.h:84:50: warning: unused parameter 'name' [-Wunused-parameter]
      virtual Int_t BeginTransaction(const char *name = "") {return 0;}
                                                 ^
XPSProjectHandler.cxx:53:15: warning: unused variable 'kCSa' [-Wunused-const-variable]
const Bool_t  kCSa = 0; //debug: print function names in loops
              ^
3 warnings generated.
clang++ -I/include -O2 -pipe -Wall -W -Woverloaded-virtual -pthread -stdlib=libc++ -m64 -I/usr/local/root/include/root -c XPSData.cxx
XPSData.cxx:67:17: warning: using directive refers to implicitly-defined namespace 'std'
using namespace std;
                ^
In file included from XPSData.cxx:82:
In file included from ./XPSData.h:43:
In file included from ./XPSSchemes.h:41:
./XPSBase.h:208:25: warning: 'XTreeInfo::GetOption' hides overloaded virtual function [-Woverloaded-virtual]
      virtual Option_t *GetOption()                      {return fOption.Data();}
                        ^
/usr/local/root/include/root/TObject.h:127:24: note: hidden overloaded virtual function 'TObject::GetOption' declared here: different qualifiers (const vs none)
   virtual Option_t   *GetOption() const { return ""; }
                       ^
In file included from XPSData.cxx:82:
In file included from ./XPSData.h:47:
./XPSProjectHandler.h:84:50: warning: unused parameter 'name' [-Wunused-parameter]
      virtual Int_t BeginTransaction(const char *name = "") {return 0;}
                                                 ^
In file included from XPSData.cxx:82:
./XPSData.h:699:53: warning: unused parameter 'min' [-Wunused-parameter]
                       Option_t * /*opt*/, Double_t min = -1111, Double_t max = -1111,
                                                    ^
./XPSData.h:699:75: warning: unused parameter 'max' [-Wunused-parameter]
                       Option_t * /*opt*/, Double_t min = -1111, Double_t max = -1111,
                                                                          ^
./XPSData.h:700:36: warning: unused parameter 'var2sort' [-Wunused-parameter]
                       const char *var2sort = "", Bool_t down = kFALSE) {return 0;}
                                   ^
./XPSData.h:700:58: warning: unused parameter 'down' [-Wunused-parameter]
                       const char *var2sort = "", Bool_t down = kFALSE) {return 0;}
                                                         ^
./XPSData.h:1050:51: warning: explicitly assigning a variable of type 'Int_t' (aka 'int') to itself [-Wself-assign]
      virtual Double_t GetValue(Int_t id = 1) {id = id; return fLevel;}
                                               ˜˜ ^ ˜˜
In file included from XPSData.cxx:84:
./TStat.h:332:37: warning: unused parameter 'x' [-Wunused-parameter]
      virtual Double_t Rho(Double_t x)        {return 0;}
                                    ^
./TStat.h:333:37: warning: unused parameter 'x' [-Wunused-parameter]
      virtual Double_t Psi(Double_t x)        {return 0;}
                                    ^
./TStat.h:334:44: warning: unused parameter 'x' [-Wunused-parameter]
      virtual Double_t Derivative(Double_t x) {return 0;}
                                           ^
./TStat.h:335:40: warning: unused parameter 'x' [-Wunused-parameter]
      virtual Double_t Weight(Double_t x)     {return 0;}
                                       ^
XPSData.cxx:506:50: warning: unused parameter 'name' [-Wunused-parameter]
Int_t XDataManager::BeginTransaction(const char *name)
                                                 ^
XPSData.cxx:1799:10: warning: unused variable 'err' [-Wunused-variable]
   Int_t err = errNoErr;
         ^
XPSData.cxx:1793:46: warning: unused parameter 'n' [-Wunused-parameter]
Int_t XGeneChipHyb::ExportMaskTreeInfo(Int_t n, TString *names, const char *varlist,
                                             ^
XPSData.cxx:1793:58: warning: unused parameter 'names' [-Wunused-parameter]
Int_t XGeneChipHyb::ExportMaskTreeInfo(Int_t n, TString *names, const char *varlist,
                                                         ^
XPSData.cxx:1793:77: warning: unused parameter 'varlist' [-Wunused-parameter]
Int_t XGeneChipHyb::ExportMaskTreeInfo(Int_t n, TString *names, const char *varlist,
                                                                            ^
XPSData.cxx:1794:31: warning: unused parameter 'output' [-Wunused-parameter]
                    ofstream &output, const char *sep)
                              ^
XPSData.cxx:1794:51: warning: unused parameter 'sep' [-Wunused-parameter]
                    ofstream &output, const char *sep)
                                                  ^
XPSData.cxx:2822:10: warning: unused variable 'fNOutlier' [-Wunused-variable]
   Int_t fNOutlier = atoi(strtok(&nextline[dif], "\""));
         ^
XPSData.cxx:2832:10: warning: unused variable 'fNModified' [-Wunused-variable]
   Int_t fNModified = atoi(strtok(&nextline[dif], "\""));
         ^
XPSData.cxx:2812:10: warning: unused variable 'fNMasked' [-Wunused-variable]
   Int_t fNMasked = atoi(strtok(&nextline[dif], "\""));
         ^
22 warnings generated.
clang++ -I/include -O2 -pipe -Wall -W -Woverloaded-virtual -pthread -stdlib=libc++ -m64 -I/usr/local/root/include/root -c XPSProcessing.cxx
XPSProcessing.cxx:59:17: warning: using directive refers to implicitly-defined namespace 'std'
using namespace std;
                ^
In file included from XPSProcessing.cxx:71:
In file included from ./XPSProcessing.h:42:
In file included from ./XPSSchemes.h:41:
./XPSBase.h:208:25: warning: 'XTreeInfo::GetOption' hides overloaded virtual function [-Woverloaded-virtual]
      virtual Option_t *GetOption()                      {return fOption.Data();}
                        ^
/usr/local/root/include/root/TObject.h:127:24: note: hidden overloaded virtual function 'TObject::GetOption' declared here: different qualifiers (const vs none)
   virtual Option_t   *GetOption() const { return ""; }
                       ^
In file included from XPSProcessing.cxx:71:
In file included from ./XPSProcessing.h:46:
In file included from ./XPSData.h:47:
./XPSProjectHandler.h:84:50: warning: unused parameter 'name' [-Wunused-parameter]
      virtual Int_t BeginTransaction(const char *name = "") {return 0;}
                                                 ^
In file included from XPSProcessing.cxx:71:
In file included from ./XPSProcessing.h:46:
./XPSData.h:699:53: warning: unused parameter 'min' [-Wunused-parameter]
                       Option_t * /*opt*/, Double_t min = -1111, Double_t max = -1111,
                                                    ^
./XPSData.h:699:75: warning: unused parameter 'max' [-Wunused-parameter]
                       Option_t * /*opt*/, Double_t min = -1111, Double_t max = -1111,
                                                                          ^
./XPSData.h:700:36: warning: unused parameter 'var2sort' [-Wunused-parameter]
                       const char *var2sort = "", Bool_t down = kFALSE) {return 0;}
                                   ^
./XPSData.h:700:58: warning: unused parameter 'down' [-Wunused-parameter]
                       const char *var2sort = "", Bool_t down = kFALSE) {return 0;}
                                                         ^
./XPSData.h:1050:51: warning: explicitly assigning a variable of type 'Int_t' (aka 'int') to itself [-Wself-assign]
      virtual Double_t GetValue(Int_t id = 1) {id = id; return fLevel;}
                                               ˜˜ ^ ˜˜
In file included from XPSProcessing.cxx:73:
./TStat.h:332:37: warning: unused parameter 'x' [-Wunused-parameter]
      virtual Double_t Rho(Double_t x)        {return 0;}
                                    ^
./TStat.h:333:37: warning: unused parameter 'x' [-Wunused-parameter]
      virtual Double_t Psi(Double_t x)        {return 0;}
                                    ^
./TStat.h:334:44: warning: unused parameter 'x' [-Wunused-parameter]
      virtual Double_t Derivative(Double_t x) {return 0;}
                                           ^
./TStat.h:335:40: warning: unused parameter 'x' [-Wunused-parameter]
      virtual Double_t Weight(Double_t x)     {return 0;}
                                       ^
XPSProcessing.cxx:788:53: warning: unused parameter 'name' [-Wunused-parameter]
Int_t XProcessManager::BeginTransaction(const char *name)
                                                    ^
XPSProcessing.cxx:1532:10: warning: unused variable 'err' [-Wunused-variable]
   Int_t err = errNoErr;
         ^
XPSProcessing.cxx:1526:44: warning: unused parameter 'n' [-Wunused-parameter]
Int_t XProcesSet::ExportMaskTreeInfo(Int_t n, TString *names, const char *varlist,
                                           ^
XPSProcessing.cxx:1526:56: warning: unused parameter 'names' [-Wunused-parameter]
Int_t XProcesSet::ExportMaskTreeInfo(Int_t n, TString *names, const char *varlist,
                                                       ^
XPSProcessing.cxx:1526:75: warning: unused parameter 'varlist' [-Wunused-parameter]
Int_t XProcesSet::ExportMaskTreeInfo(Int_t n, TString *names, const char *varlist,
                                                                          ^
XPSProcessing.cxx:1527:29: warning: unused parameter 'output' [-Wunused-parameter]
                  ofstream &output, const char *sep)
                            ^
XPSProcessing.cxx:1527:49: warning: unused parameter 'sep' [-Wunused-parameter]
                  ofstream &output, const char *sep)
                                                ^
XPSProcessing.cxx:279:15: warning: unused variable 'kCSa' [-Wunused-const-variable]
const Bool_t  kCSa = 0; //debug: print function names in loops
              ^
20 warnings generated.
clang++ -I/include -O2 -pipe -Wall -W -Woverloaded-virtual -pthread -stdlib=libc++ -m64 -I/usr/local/root/include/root -c XPSHybridizer.cxx
XPSHybridizer.cxx:49:17: warning: using directive refers to implicitly-defined namespace 'std'
using namespace std;
                ^
In file included from XPSHybridizer.cxx:66:
./TStat.h:332:37: warning: unused parameter 'x' [-Wunused-parameter]
      virtual Double_t Rho(Double_t x)        {return 0;}
                                    ^
./TStat.h:333:37: warning: unused parameter 'x' [-Wunused-parameter]
      virtual Double_t Psi(Double_t x)        {return 0;}
                                    ^
./TStat.h:334:44: warning: unused parameter 'x' [-Wunused-parameter]
      virtual Double_t Derivative(Double_t x) {return 0;}
                                           ^
./TStat.h:335:40: warning: unused parameter 'x' [-Wunused-parameter]
      virtual Double_t Weight(Double_t x)     {return 0;}
                                       ^
In file included from XPSHybridizer.cxx:67:
In file included from ./XPSHybridizer.h:42:
In file included from ./XPSProcessing.h:42:
In file included from ./XPSSchemes.h:41:
./XPSBase.h:208:25: warning: 'XTreeInfo::GetOption' hides overloaded virtual function [-Woverloaded-virtual]
      virtual Option_t *GetOption()                      {return fOption.Data();}
                        ^
/usr/local/root/include/root/TObject.h:127:24: note: hidden overloaded virtual function 'TObject::GetOption' declared here: different qualifiers (const vs none)
   virtual Option_t   *GetOption() const { return ""; }
                       ^
In file included from XPSHybridizer.cxx:67:
In file included from ./XPSHybridizer.h:42:
In file included from ./XPSProcessing.h:46:
In file included from ./XPSData.h:47:
./XPSProjectHandler.h:84:50: warning: unused parameter 'name' [-Wunused-parameter]
      virtual Int_t BeginTransaction(const char *name = "") {return 0;}
                                                 ^
In file included from XPSHybridizer.cxx:67:
In file included from ./XPSHybridizer.h:42:
In file included from ./XPSProcessing.h:46:
./XPSData.h:699:53: warning: unused parameter 'min' [-Wunused-parameter]
                       Option_t * /*opt*/, Double_t min = -1111, Double_t max = -1111,
                                                    ^
./XPSData.h:699:75: warning: unused parameter 'max' [-Wunused-parameter]
                       Option_t * /*opt*/, Double_t min = -1111, Double_t max = -1111,
                                                                          ^
./XPSData.h:700:36: warning: unused parameter 'var2sort' [-Wunused-parameter]
                       const char *var2sort = "", Bool_t down = kFALSE) {return 0;}
                                   ^
./XPSData.h:700:58: warning: unused parameter 'down' [-Wunused-parameter]
                       const char *var2sort = "", Bool_t down = kFALSE) {return 0;}
                                                         ^
./XPSData.h:1050:51: warning: explicitly assigning a variable of type 'Int_t' (aka 'int') to itself [-Wself-assign]
      virtual Double_t GetValue(Int_t id = 1) {id = id; return fLevel;}
                                               ˜˜ ^ ˜˜
In file included from XPSHybridizer.cxx:67:
./XPSHybridizer.h:177:37: warning: unused parameter 'n' [-Wunused-parameter]
      virtual Int_t Calculate(Int_t n, Double_t *x, Double_t *y, Double_t *z,
                                    ^
./XPSHybridizer.h:177:50: warning: unused parameter 'x' [-Wunused-parameter]
      virtual Int_t Calculate(Int_t n, Double_t *x, Double_t *y, Double_t *z,
                                                 ^
./XPSHybridizer.h:177:63: warning: unused parameter 'y' [-Wunused-parameter]
      virtual Int_t Calculate(Int_t n, Double_t *x, Double_t *y, Double_t *z,
                                                              ^
./XPSHybridizer.h:177:76: warning: unused parameter 'z' [-Wunused-parameter]
      virtual Int_t Calculate(Int_t n, Double_t *x, Double_t *y, Double_t *z,
                                                                           ^
./XPSHybridizer.h:178:34: warning: unused parameter 'dx' [-Wunused-parameter]
                       Double_t *dx, Double_t *dy, Int_t *idx, Int_t nsub)
                                 ^
./XPSHybridizer.h:178:48: warning: unused parameter 'dy' [-Wunused-parameter]
                       Double_t *dx, Double_t *dy, Int_t *idx, Int_t nsub)
                                               ^
./XPSHybridizer.h:178:59: warning: unused parameter 'idx' [-Wunused-parameter]
                       Double_t *dx, Double_t *dy, Int_t *idx, Int_t nsub)
                                                          ^
./XPSHybridizer.h:178:70: warning: unused parameter 'nsub' [-Wunused-parameter]
                       Double_t *dx, Double_t *dy, Int_t *idx, Int_t nsub)
                                                                     ^
./XPSHybridizer.h:564:21: warning: 'XArithmeticMean::Calculate' hides overloaded virtual function [-Woverloaded-virtual]
      virtual Int_t Calculate(Double_t &value1, Double_t &value2, Int_t &num);
                    ^
./XPSHybridizer.h:177:21: note: hidden overloaded virtual function 'XExpressor::Calculate' declared here: different number of parameters (8 vs 3)
      virtual Int_t Calculate(Int_t n, Double_t *x, Double_t *y, Double_t *z,
                    ^
./XPSHybridizer.h:655:21: warning: 'XWeightedDiff::Calculate' hides overloaded virtual function [-Woverloaded-virtual]
      virtual Int_t Calculate(Double_t &value1, Double_t &value2, Int_t &num);
                    ^
./XPSHybridizer.h:177:21: note: hidden overloaded virtual function 'XExpressor::Calculate' declared here: different number of parameters (8 vs 3)
      virtual Int_t Calculate(Int_t n, Double_t *x, Double_t *y, Double_t *z,
                    ^
./XPSHybridizer.h:702:21: warning: 'XTukeyBiweight::Calculate' hides overloaded virtual function [-Woverloaded-virtual]
      virtual Int_t Calculate(Double_t &value1, Double_t &value2, Int_t &num);
                    ^
./XPSHybridizer.h:177:21: note: hidden overloaded virtual function 'XExpressor::Calculate' declared here: different number of parameters (8 vs 3)
      virtual Int_t Calculate(Int_t n, Double_t *x, Double_t *y, Double_t *z,
                    ^
./XPSHybridizer.h:724:21: warning: 'XMedianPolish::Calculate' hides overloaded virtual function [-Woverloaded-virtual]
      virtual Int_t Calculate(Int_t n, Double_t *x, Double_t *y, Int_t *msk);
                    ^
./XPSHybridizer.h:177:21: note: hidden overloaded virtual function 'XExpressor::Calculate' declared here: different number of parameters (8 vs 4)
      virtual Int_t Calculate(Int_t n, Double_t *x, Double_t *y, Double_t *z,
                    ^
./XPSHybridizer.h:755:21: warning: 'XFARMS::Calculate' hides overloaded virtual function [-Woverloaded-virtual]
      virtual Int_t Calculate(Int_t n, Double_t *x, Double_t *y, Int_t *msk);
                    ^
./XPSHybridizer.h:177:21: note: hidden overloaded virtual function 'XExpressor::Calculate' declared here: different number of parameters (8 vs 4)
      virtual Int_t Calculate(Int_t n, Double_t *x, Double_t *y, Double_t *z,
                    ^
./XPSHybridizer.h:780:21: warning: 'XDFW::Calculate' hides overloaded virtual function [-Woverloaded-virtual]
      virtual Int_t Calculate(Int_t n, Double_t *x, Double_t *y, Int_t *msk);
                    ^
./XPSHybridizer.h:177:21: note: hidden overloaded virtual function 'XExpressor::Calculate' declared here: different number of parameters (8 vs 4)
      virtual Int_t Calculate(Int_t n, Double_t *x, Double_t *y, Double_t *z,
                    ^
XPSHybridizer.cxx:750:39: warning: unused parameter 'msk' [-Wunused-parameter]
                  Double_t *w, Int_t *msk)
                                      ^
XPSHybridizer.cxx:1874:81: warning: unused parameter 'num' [-Wunused-parameter]
Int_t XMeanDifferenceCall::Calculate(Double_t &value1, Double_t &value2, Int_t &num)
                                                                                ^
XPSHybridizer.cxx:1987:76: warning: unused parameter 'num' [-Wunused-parameter]
Int_t XDetectionCall::Calculate(Double_t &value1, Double_t &value2, Int_t &num)
                                                                           ^
XPSHybridizer.cxx:2170:38: warning: unused parameter 'value1' [-Wunused-parameter]
Int_t XMAS4Call::Calculate(Double_t &value1, Double_t &value2, Int_t &num)
                                     ^
XPSHybridizer.cxx:2170:56: warning: unused parameter 'value2' [-Wunused-parameter]
Int_t XMAS4Call::Calculate(Double_t &value1, Double_t &value2, Int_t &num)
                                                       ^
XPSHybridizer.cxx:2170:71: warning: unused parameter 'num' [-Wunused-parameter]
Int_t XMAS4Call::Calculate(Double_t &value1, Double_t &value2, Int_t &num)
                                                                      ^
XPSHybridizer.cxx:2294:71: warning: unused parameter 'num' [-Wunused-parameter]
Int_t XDABGCall::Calculate(Double_t &value1, Double_t &value2, Int_t &num)
                                                                      ^
XPSHybridizer.cxx:2554:69: warning: unused parameter 'msk' [-Wunused-parameter]
Int_t XINICall::Calculate(Int_t n, Double_t *x, Double_t *y, Int_t *msk)
                                                                    ^
XPSHybridizer.cxx:2596:79: warning: unused parameter 'x' [-Wunused-parameter]
Int_t XINICall::DoFARMS130(Int_t nrow, Int_t ncol, Double_t *inten, Double_t *x, 
                                                                              ^
XPSHybridizer.cxx:2597:69: warning: unused parameter 'scale' [-Wunused-parameter]
                Double_t *y, Double_t weight, Double_t mu, Double_t scale, 
                                                                    ^
XPSHybridizer.cxx:2785:27: warning: unused parameter 'x' [-Wunused-parameter]
                Double_t *x, Double_t *y, Double_t weight, Double_t mu, 
                          ^
XPSHybridizer.cxx:2786:26: warning: unused parameter 'scale' [-Wunused-parameter]
                Double_t scale, Double_t tol, Double_t cyc)
                         ^
XPSHybridizer.cxx:3833:74: warning: unused parameter 'msk' [-Wunused-parameter]
Int_t XMedianPolish::Calculate(Int_t n, Double_t *x, Double_t *y, Int_t *msk)
                                                                         ^
XPSHybridizer.cxx:3893:67: warning: unused parameter 'msk' [-Wunused-parameter]
Int_t XFARMS::Calculate(Int_t n, Double_t *x, Double_t *y, Int_t *msk)
                                                                  ^
XPSHybridizer.cxx:4466:65: warning: unused parameter 'msk' [-Wunused-parameter]
Int_t XDFW::Calculate(Int_t n, Double_t *x, Double_t *y, Int_t *msk)
                                                                ^
41 warnings generated.
clang++ -I/include -O2 -pipe -Wall -W -Woverloaded-virtual -pthread -stdlib=libc++ -m64 -I/usr/local/root/include/root -c XPSSelector.cxx
XPSSelector.cxx:38:17: warning: using directive refers to implicitly-defined namespace 'std'
using namespace std;
                ^
In file included from XPSSelector.cxx:54:
In file included from ./XPSSelector.h:42:
In file included from ./XPSProcessing.h:42:
In file included from ./XPSSchemes.h:41:
./XPSBase.h:208:25: warning: 'XTreeInfo::GetOption' hides overloaded virtual function [-Woverloaded-virtual]
      virtual Option_t *GetOption()                      {return fOption.Data();}
                        ^
/usr/local/root/include/root/TObject.h:127:24: note: hidden overloaded virtual function 'TObject::GetOption' declared here: different qualifiers (const vs none)
   virtual Option_t   *GetOption() const { return ""; }
                       ^
In file included from XPSSelector.cxx:54:
In file included from ./XPSSelector.h:42:
In file included from ./XPSProcessing.h:46:
In file included from ./XPSData.h:47:
./XPSProjectHandler.h:84:50: warning: unused parameter 'name' [-Wunused-parameter]
      virtual Int_t BeginTransaction(const char *name = "") {return 0;}
                                                 ^
In file included from XPSSelector.cxx:54:
In file included from ./XPSSelector.h:42:
In file included from ./XPSProcessing.h:46:
./XPSData.h:699:53: warning: unused parameter 'min' [-Wunused-parameter]
                       Option_t * /*opt*/, Double_t min = -1111, Double_t max = -1111,
                                                    ^
./XPSData.h:699:75: warning: unused parameter 'max' [-Wunused-parameter]
                       Option_t * /*opt*/, Double_t min = -1111, Double_t max = -1111,
                                                                          ^
./XPSData.h:700:36: warning: unused parameter 'var2sort' [-Wunused-parameter]
                       const char *var2sort = "", Bool_t down = kFALSE) {return 0;}
                                   ^
./XPSData.h:700:58: warning: unused parameter 'down' [-Wunused-parameter]
                       const char *var2sort = "", Bool_t down = kFALSE) {return 0;}
                                                         ^
./XPSData.h:1050:51: warning: explicitly assigning a variable of type 'Int_t' (aka 'int') to itself [-Wself-assign]
      virtual Double_t GetValue(Int_t id = 1) {id = id; return fLevel;}
                                               ˜˜ ^ ˜˜
XPSSelector.cxx:317:71: warning: unused parameter 'max' [-Wunused-parameter]
Double_t XRankSelector::Cutoff(Int_t n, const Double_t *arr, Double_t max, 
                                                                      ^
XPSSelector.cxx:318:32: warning: unused parameter 'showGraph' [-Wunused-parameter]
                        Bool_t showGraph)
                               ^
10 warnings generated.
clang++ -I/include -O2 -pipe -Wall -W -Woverloaded-virtual -pthread -stdlib=libc++ -m64 -I/usr/local/root/include/root -c XPSNormalizer.cxx
XPSNormalizer.cxx:46:17: warning: using directive refers to implicitly-defined namespace 'std'
using namespace std;
                ^
In file included from XPSNormalizer.cxx:65:
In file included from ./XPSNormalizer.h:42:
In file included from ./XPSProcessing.h:42:
In file included from ./XPSSchemes.h:41:
./XPSBase.h:208:25: warning: 'XTreeInfo::GetOption' hides overloaded virtual function [-Woverloaded-virtual]
      virtual Option_t *GetOption()                      {return fOption.Data();}
                        ^
/usr/local/root/include/root/TObject.h:127:24: note: hidden overloaded virtual function 'TObject::GetOption' declared here: different qualifiers (const vs none)
   virtual Option_t   *GetOption() const { return ""; }
                       ^
In file included from XPSNormalizer.cxx:65:
In file included from ./XPSNormalizer.h:42:
In file included from ./XPSProcessing.h:46:
In file included from ./XPSData.h:47:
./XPSProjectHandler.h:84:50: warning: unused parameter 'name' [-Wunused-parameter]
      virtual Int_t BeginTransaction(const char *name = "") {return 0;}
                                                 ^
In file included from XPSNormalizer.cxx:65:
In file included from ./XPSNormalizer.h:42:
In file included from ./XPSProcessing.h:46:
./XPSData.h:699:53: warning: unused parameter 'min' [-Wunused-parameter]
                       Option_t * /*opt*/, Double_t min = -1111, Double_t max = -1111,
                                                    ^
./XPSData.h:699:75: warning: unused parameter 'max' [-Wunused-parameter]
                       Option_t * /*opt*/, Double_t min = -1111, Double_t max = -1111,
                                                                          ^
./XPSData.h:700:36: warning: unused parameter 'var2sort' [-Wunused-parameter]
                       const char *var2sort = "", Bool_t down = kFALSE) {return 0;}
                                   ^
./XPSData.h:700:58: warning: unused parameter 'down' [-Wunused-parameter]
                       const char *var2sort = "", Bool_t down = kFALSE) {return 0;}
                                                         ^
./XPSData.h:1050:51: warning: explicitly assigning a variable of type 'Int_t' (aka 'int') to itself [-Wself-assign]
      virtual Double_t GetValue(Int_t id = 1) {id = id; return fLevel;}
                                               ˜˜ ^ ˜˜
In file included from XPSNormalizer.cxx:66:
./TStat.h:332:37: warning: unused parameter 'x' [-Wunused-parameter]
      virtual Double_t Rho(Double_t x)        {return 0;}
                                    ^
./TStat.h:333:37: warning: unused parameter 'x' [-Wunused-parameter]
      virtual Double_t Psi(Double_t x)        {return 0;}
                                    ^
./TStat.h:334:44: warning: unused parameter 'x' [-Wunused-parameter]
      virtual Double_t Derivative(Double_t x) {return 0;}
                                           ^
./TStat.h:335:40: warning: unused parameter 'x' [-Wunused-parameter]
      virtual Double_t Weight(Double_t x)     {return 0;}
                                       ^
XPSNormalizer.cxx:536:48: warning: unused parameter 'xout' [-Wunused-parameter]
                         Int_t nout, Double_t *xout, Double_t *yout)
                                               ^
XPSNormalizer.cxx:613:48: warning: unused parameter 'xout' [-Wunused-parameter]
                         Int_t nout, Double_t *xout, Double_t *yout)
                                               ^
XPSNormalizer.cxx:692:47: warning: unused parameter 'xout' [-Wunused-parameter]
                        Int_t nout, Double_t *xout, Double_t *yout)
                                              ^
XPSNormalizer.cxx:1132:41: warning: unused parameter 'n' [-Wunused-parameter]
Int_t XQuantileNormalizer::DoMean(Int_t n, Double_t *x)
                                        ^
XPSNormalizer.cxx:1163:48: warning: unused parameter 'n' [-Wunused-parameter]
Int_t XQuantileNormalizer::DoTrimmedMean(Int_t n, Double_t *x, Double_t trim)
                                               ^
XPSNormalizer.cxx:1300:57: warning: unused parameter 'x' [-Wunused-parameter]
Int_t XQuantileNormalizer::Calculate(Int_t n, Double_t *x, Double_t *y, Int_t *msk)
                                                        ^
XPSNormalizer.cxx:1300:80: warning: unused parameter 'msk' [-Wunused-parameter]
Int_t XQuantileNormalizer::Calculate(Int_t n, Double_t *x, Double_t *y, Int_t *msk)
                                                                               ^
XPSNormalizer.cxx:70:15: warning: unused variable 'kCSa' [-Wunused-const-variable]
const Bool_t  kCSa = 0; //debug: print function names in loops
              ^
20 warnings generated.
clang++ -I/include -O2 -pipe -Wall -W -Woverloaded-virtual -pthread -stdlib=libc++ -m64 -I/usr/local/root/include/root -c XPSPreProcessing.cxx
XPSPreProcessing.cxx:74:17: warning: using directive refers to implicitly-defined namespace 'std'
using namespace std;
                ^
In file included from XPSPreProcessing.cxx:95:
In file included from ./XPSPreProcessing.h:42:
In file included from ./XPSProcessing.h:42:
In file included from ./XPSSchemes.h:41:
./XPSBase.h:208:25: warning: 'XTreeInfo::GetOption' hides overloaded virtual function [-Woverloaded-virtual]
      virtual Option_t *GetOption()                      {return fOption.Data();}
                        ^
/usr/local/root/include/root/TObject.h:127:24: note: hidden overloaded virtual function 'TObject::GetOption' declared here: different qualifiers (const vs none)
   virtual Option_t   *GetOption() const { return ""; }
                       ^
In file included from XPSPreProcessing.cxx:95:
In file included from ./XPSPreProcessing.h:42:
In file included from ./XPSProcessing.h:46:
In file included from ./XPSData.h:47:
./XPSProjectHandler.h:84:50: warning: unused parameter 'name' [-Wunused-parameter]
      virtual Int_t BeginTransaction(const char *name = "") {return 0;}
                                                 ^
In file included from XPSPreProcessing.cxx:95:
In file included from ./XPSPreProcessing.h:42:
In file included from ./XPSProcessing.h:46:
./XPSData.h:699:53: warning: unused parameter 'min' [-Wunused-parameter]
                       Option_t * /*opt*/, Double_t min = -1111, Double_t max = -1111,
                                                    ^
./XPSData.h:699:75: warning: unused parameter 'max' [-Wunused-parameter]
                       Option_t * /*opt*/, Double_t min = -1111, Double_t max = -1111,
                                                                          ^
./XPSData.h:700:36: warning: unused parameter 'var2sort' [-Wunused-parameter]
                       const char *var2sort = "", Bool_t down = kFALSE) {return 0;}
                                   ^
./XPSData.h:700:58: warning: unused parameter 'down' [-Wunused-parameter]
                       const char *var2sort = "", Bool_t down = kFALSE) {return 0;}
                                                         ^
./XPSData.h:1050:51: warning: explicitly assigning a variable of type 'Int_t' (aka 'int') to itself [-Wself-assign]
      virtual Double_t GetValue(Int_t id = 1) {id = id; return fLevel;}
                                               ˜˜ ^ ˜˜
In file included from XPSPreProcessing.cxx:95:
./XPSPreProcessing.h:394:21: warning: 'XGCProcesSet::QualityControl' hides overloaded virtual function [-Woverloaded-virtual]
      virtual Int_t QualityControl(Int_t numdata, TTree **datatree,
                    ^
./XPSPreProcessing.h:323:21: note: hidden overloaded virtual function 'XPreProcesSet::QualityControl' declared here: different number of parameters (4 vs 5)
      virtual Int_t QualityControl(Int_t /*numdata*/, TTree ** /*datatree*/,
                    ^
In file included from XPSPreProcessing.cxx:96:
./XPSHybridizer.h:177:37: warning: unused parameter 'n' [-Wunused-parameter]
      virtual Int_t Calculate(Int_t n, Double_t *x, Double_t *y, Double_t *z,
                                    ^
./XPSHybridizer.h:177:50: warning: unused parameter 'x' [-Wunused-parameter]
      virtual Int_t Calculate(Int_t n, Double_t *x, Double_t *y, Double_t *z,
                                                 ^
./XPSHybridizer.h:177:63: warning: unused parameter 'y' [-Wunused-parameter]
      virtual Int_t Calculate(Int_t n, Double_t *x, Double_t *y, Double_t *z,
                                                              ^
./XPSHybridizer.h:177:76: warning: unused parameter 'z' [-Wunused-parameter]
      virtual Int_t Calculate(Int_t n, Double_t *x, Double_t *y, Double_t *z,
                                                                           ^
./XPSHybridizer.h:178:34: warning: unused parameter 'dx' [-Wunused-parameter]
                       Double_t *dx, Double_t *dy, Int_t *idx, Int_t nsub)
                                 ^
./XPSHybridizer.h:178:48: warning: unused parameter 'dy' [-Wunused-parameter]
                       Double_t *dx, Double_t *dy, Int_t *idx, Int_t nsub)
                                               ^
./XPSHybridizer.h:178:59: warning: unused parameter 'idx' [-Wunused-parameter]
                       Double_t *dx, Double_t *dy, Int_t *idx, Int_t nsub)
                                                          ^
./XPSHybridizer.h:178:70: warning: unused parameter 'nsub' [-Wunused-parameter]
                       Double_t *dx, Double_t *dy, Int_t *idx, Int_t nsub)
                                                                     ^
./XPSHybridizer.h:564:21: warning: 'XArithmeticMean::Calculate' hides overloaded virtual function [-Woverloaded-virtual]
      virtual Int_t Calculate(Double_t &value1, Double_t &value2, Int_t &num);
                    ^
./XPSHybridizer.h:177:21: note: hidden overloaded virtual function 'XExpressor::Calculate' declared here: different number of parameters (8 vs 3)
      virtual Int_t Calculate(Int_t n, Double_t *x, Double_t *y, Double_t *z,
                    ^
./XPSHybridizer.h:655:21: warning: 'XWeightedDiff::Calculate' hides overloaded virtual function [-Woverloaded-virtual]
      virtual Int_t Calculate(Double_t &value1, Double_t &value2, Int_t &num);
                    ^
./XPSHybridizer.h:177:21: note: hidden overloaded virtual function 'XExpressor::Calculate' declared here: different number of parameters (8 vs 3)
      virtual Int_t Calculate(Int_t n, Double_t *x, Double_t *y, Double_t *z,
                    ^
./XPSHybridizer.h:702:21: warning: 'XTukeyBiweight::Calculate' hides overloaded virtual function [-Woverloaded-virtual]
      virtual Int_t Calculate(Double_t &value1, Double_t &value2, Int_t &num);
                    ^
./XPSHybridizer.h:177:21: note: hidden overloaded virtual function 'XExpressor::Calculate' declared here: different number of parameters (8 vs 3)
      virtual Int_t Calculate(Int_t n, Double_t *x, Double_t *y, Double_t *z,
                    ^
./XPSHybridizer.h:724:21: warning: 'XMedianPolish::Calculate' hides overloaded virtual function [-Woverloaded-virtual]
      virtual Int_t Calculate(Int_t n, Double_t *x, Double_t *y, Int_t *msk);
                    ^
./XPSHybridizer.h:177:21: note: hidden overloaded virtual function 'XExpressor::Calculate' declared here: different number of parameters (8 vs 4)
      virtual Int_t Calculate(Int_t n, Double_t *x, Double_t *y, Double_t *z,
                    ^
./XPSHybridizer.h:755:21: warning: 'XFARMS::Calculate' hides overloaded virtual function [-Woverloaded-virtual]
      virtual Int_t Calculate(Int_t n, Double_t *x, Double_t *y, Int_t *msk);
                    ^
./XPSHybridizer.h:177:21: note: hidden overloaded virtual function 'XExpressor::Calculate' declared here: different number of parameters (8 vs 4)
      virtual Int_t Calculate(Int_t n, Double_t *x, Double_t *y, Double_t *z,
                    ^
./XPSHybridizer.h:780:21: warning: 'XDFW::Calculate' hides overloaded virtual function [-Woverloaded-virtual]
      virtual Int_t Calculate(Int_t n, Double_t *x, Double_t *y, Int_t *msk);
                    ^
./XPSHybridizer.h:177:21: note: hidden overloaded virtual function 'XExpressor::Calculate' declared here: different number of parameters (8 vs 4)
      virtual Int_t Calculate(Int_t n, Double_t *x, Double_t *y, Double_t *z,
                    ^
In file included from XPSPreProcessing.cxx:99:
./TStat.h:332:37: warning: unused parameter 'x' [-Wunused-parameter]
      virtual Double_t Rho(Double_t x)        {return 0;}
                                    ^
./TStat.h:333:37: warning: unused parameter 'x' [-Wunused-parameter]
      virtual Double_t Psi(Double_t x)        {return 0;}
                                    ^
./TStat.h:334:44: warning: unused parameter 'x' [-Wunused-parameter]
      virtual Double_t Derivative(Double_t x) {return 0;}
                                           ^
./TStat.h:335:40: warning: unused parameter 'x' [-Wunused-parameter]
      virtual Double_t Weight(Double_t x)     {return 0;}
                                       ^
XPSPreProcessing.cxx:3524:17: warning: unused variable 'idxlo' [-Wunused-variable]
   Int_t idxhi, idxlo;
                ^
XPSPreProcessing.cxx:3524:10: warning: unused variable 'idxhi' [-Wunused-variable]
   Int_t idxhi, idxlo;
         ^
XPSPreProcessing.cxx:3511:62: warning: unused parameter 'file' [-Wunused-parameter]
                    TTree **bordtree, XDNAChip *chip, TFile *file)
                                                             ^
XPSPreProcessing.cxx:3680:10: warning: unused variable 'size' [-Wunused-variable]
   Int_t size     = numrows*numcols;
         ^
XPSPreProcessing.cxx:3679:10: warning: unused variable 'numunits' [-Wunused-variable]
   Int_t numunits = chip->GetNumUnits();
         ^
XPSPreProcessing.cxx:3669:48: warning: unused parameter 'numbgrd' [-Wunused-parameter]
Int_t XGCProcesSet::DoBgrdQualityControl(Int_t numbgrd, TTree **bgrdtree,
                                               ^
XPSPreProcessing.cxx:3669:65: warning: unused parameter 'bgrdtree' [-Wunused-parameter]
Int_t XGCProcesSet::DoBgrdQualityControl(Int_t numbgrd, TTree **bgrdtree,
                                                                ^
XPSPreProcessing.cxx:3670:44: warning: unused parameter 'file' [-Wunused-parameter]
                    XDNAChip *chip, TFile *file)
                                           ^
XPSPreProcessing.cxx:6771:16: warning: unused variable 'idxstr' [-Wunused-variable]
   XIdxString *idxstr = 0;
               ^
XPSPreProcessing.cxx:7990:29: warning: unused parameter 'bgrd' [-Wunused-parameter]
                   Double_t bgrd, Double_t bgdev, Int_t npix)
                            ^
XPSPreProcessing.cxx:7990:44: warning: unused parameter 'bgdev' [-Wunused-parameter]
                   Double_t bgrd, Double_t bgdev, Int_t npix)
                                           ^
XPSPreProcessing.cxx:8086:45: warning: unused parameter 'algorithm' [-Wunused-parameter]
TTree *XGCProcesSet::SchemeTree(XAlgorithm *algorithm, void *scheme, TLeaf **scmleaf)
                                            ^
XPSPreProcessing.cxx:8106:43: warning: unused parameter 'algorithm' [-Wunused-parameter]
TTree *XGCProcesSet::UnitTree(XAlgorithm *algorithm, void *unit, Int_t &numunits)
                                          ^
XPSPreProcessing.cxx:8607:59: warning: unused parameter 'nrow' [-Wunused-parameter]
Int_t XGCProcesSet::FillBgrdArrays(TTree *bgrdtree, Int_t nrow, Int_t ncol,
                                                          ^
XPSPreProcessing.cxx:8746:1: warning: unused label 'cleanup' [-Wunused-label]
cleanup:
^˜˜˜˜˜˜˜
XPSPreProcessing.cxx:9791:14: warning: unused variable 'numatoms' [-Wunused-variable]
      Int_t  numatoms = unit->GetNumAtoms();
             ^
XPSPreProcessing.cxx:9399:10: warning: unused variable 'y' [-Wunused-variable]
   Int_t y   = 0;
         ^
XPSPreProcessing.cxx:9398:10: warning: unused variable 'x' [-Wunused-variable]
   Int_t x   = 0;
         ^
XPSPreProcessing.cxx:9404:10: warning: unused variable 'stepout' [-Wunused-variable]
   Int_t stepout = (Int_t)((100000.0 + 10.0*numdata)/(Float_t)numdata); //step size for verbose output
         ^
XPSPreProcessing.cxx:10358:18: warning: unused variable 'scheme_ptr_ptr' [-Wunused-variable]
   XExonScheme **scheme_ptr_ptr = (XExonScheme**)scheme;
                 ^
47 warnings generated.
clang++ -I/include -O2 -pipe -Wall -W -Woverloaded-virtual -pthread -stdlib=libc++ -m64 -I/usr/local/root/include/root -c XPSNormation.cxx
XPSNormation.cxx:55:17: warning: using directive refers to implicitly-defined namespace 'std'
using namespace std;
                ^
In file included from XPSNormation.cxx:72:
In file included from ./XPSNormation.h:42:
In file included from ./XPSProcessing.h:42:
In file included from ./XPSSchemes.h:41:
./XPSBase.h:208:25: warning: 'XTreeInfo::GetOption' hides overloaded virtual function [-Woverloaded-virtual]
      virtual Option_t *GetOption()                      {return fOption.Data();}
                        ^
/usr/local/root/include/root/TObject.h:127:24: note: hidden overloaded virtual function 'TObject::GetOption' declared here: different qualifiers (const vs none)
   virtual Option_t   *GetOption() const { return ""; }
                       ^
In file included from XPSNormation.cxx:72:
In file included from ./XPSNormation.h:42:
In file included from ./XPSProcessing.h:46:
In file included from ./XPSData.h:47:
./XPSProjectHandler.h:84:50: warning: unused parameter 'name' [-Wunused-parameter]
      virtual Int_t BeginTransaction(const char *name = "") {return 0;}
                                                 ^
In file included from XPSNormation.cxx:72:
In file included from ./XPSNormation.h:42:
In file included from ./XPSProcessing.h:46:
./XPSData.h:699:53: warning: unused parameter 'min' [-Wunused-parameter]
                       Option_t * /*opt*/, Double_t min = -1111, Double_t max = -1111,
                                                    ^
./XPSData.h:699:75: warning: unused parameter 'max' [-Wunused-parameter]
                       Option_t * /*opt*/, Double_t min = -1111, Double_t max = -1111,
                                                                          ^
./XPSData.h:700:36: warning: unused parameter 'var2sort' [-Wunused-parameter]
                       const char *var2sort = "", Bool_t down = kFALSE) {return 0;}
                                   ^
./XPSData.h:700:58: warning: unused parameter 'down' [-Wunused-parameter]
                       const char *var2sort = "", Bool_t down = kFALSE) {return 0;}
                                                         ^
./XPSData.h:1050:51: warning: explicitly assigning a variable of type 'Int_t' (aka 'int') to itself [-Wself-assign]
      virtual Double_t GetValue(Int_t id = 1) {id = id; return fLevel;}
                                               ˜˜ ^ ˜˜
In file included from XPSNormation.cxx:75:
./TStat.h:332:37: warning: unused parameter 'x' [-Wunused-parameter]
      virtual Double_t Rho(Double_t x)        {return 0;}
                                    ^
./TStat.h:333:37: warning: unused parameter 'x' [-Wunused-parameter]
      virtual Double_t Psi(Double_t x)        {return 0;}
                                    ^
./TStat.h:334:44: warning: unused parameter 'x' [-Wunused-parameter]
      virtual Double_t Derivative(Double_t x) {return 0;}
                                           ^
./TStat.h:335:40: warning: unused parameter 'x' [-Wunused-parameter]
      virtual Double_t Weight(Double_t x)     {return 0;}
                                       ^
XPSNormation.cxx:184:53: warning: unused parameter 'infile' [-Wunused-parameter]
Int_t XNormationManager::ImportDefaults(const char *infile)
                                                    ^
XPSNormation.cxx:1021:43: warning: unused parameter 'method' [-Wunused-parameter]
Int_t XNormedGCSet::Normalize(const char *method)
                                          ^
XPSNormation.cxx:79:15: warning: unused variable 'kCSa' [-Wunused-const-variable]
const Bool_t  kCSa = 0; //debug: print function names in loops
              ^
15 warnings generated.
clang++ -I/include -O2 -pipe -Wall -W -Woverloaded-virtual -pthread -stdlib=libc++ -m64 -I/usr/local/root/include/root -c XPSFilter.cxx
XPSFilter.cxx:38:17: warning: using directive refers to implicitly-defined namespace 'std'
using namespace std;
                ^
In file included from XPSFilter.cxx:46:
In file included from ./XPSFilter.h:49:
./TStat.h:332:37: warning: unused parameter 'x' [-Wunused-parameter]
      virtual Double_t Rho(Double_t x)        {return 0;}
                                    ^
./TStat.h:333:37: warning: unused parameter 'x' [-Wunused-parameter]
      virtual Double_t Psi(Double_t x)        {return 0;}
                                    ^
./TStat.h:334:44: warning: unused parameter 'x' [-Wunused-parameter]
      virtual Double_t Derivative(Double_t x) {return 0;}
                                           ^
./TStat.h:335:40: warning: unused parameter 'x' [-Wunused-parameter]
      virtual Double_t Weight(Double_t x)     {return 0;}
                                       ^
In file included from XPSFilter.cxx:46:
In file included from ./XPSFilter.h:52:
In file included from ./XPSProcessing.h:42:
In file included from ./XPSSchemes.h:41:
./XPSBase.h:208:25: warning: 'XTreeInfo::GetOption' hides overloaded virtual function [-Woverloaded-virtual]
      virtual Option_t *GetOption()                      {return fOption.Data();}
                        ^
/usr/local/root/include/root/TObject.h:127:24: note: hidden overloaded virtual function 'TObject::GetOption' declared here: different qualifiers (const vs none)
   virtual Option_t   *GetOption() const { return ""; }
                       ^
In file included from XPSFilter.cxx:46:
In file included from ./XPSFilter.h:52:
In file included from ./XPSProcessing.h:46:
In file included from ./XPSData.h:47:
./XPSProjectHandler.h:84:50: warning: unused parameter 'name' [-Wunused-parameter]
      virtual Int_t BeginTransaction(const char *name = "") {return 0;}
                                                 ^
In file included from XPSFilter.cxx:46:
In file included from ./XPSFilter.h:52:
In file included from ./XPSProcessing.h:46:
./XPSData.h:699:53: warning: unused parameter 'min' [-Wunused-parameter]
                       Option_t * /*opt*/, Double_t min = -1111, Double_t max = -1111,
                                                    ^
./XPSData.h:699:75: warning: unused parameter 'max' [-Wunused-parameter]
                       Option_t * /*opt*/, Double_t min = -1111, Double_t max = -1111,
                                                                          ^
./XPSData.h:700:36: warning: unused parameter 'var2sort' [-Wunused-parameter]
                       const char *var2sort = "", Bool_t down = kFALSE) {return 0;}
                                   ^
./XPSData.h:700:58: warning: unused parameter 'down' [-Wunused-parameter]
                       const char *var2sort = "", Bool_t down = kFALSE) {return 0;}
                                                         ^
./XPSData.h:1050:51: warning: explicitly assigning a variable of type 'Int_t' (aka 'int') to itself [-Wself-assign]
      virtual Double_t GetValue(Int_t id = 1) {id = id; return fLevel;}
                                               ˜˜ ^ ˜˜
In file included from XPSFilter.cxx:46:
./XPSFilter.h:363:21: warning: 'XUniFilter::Calculate' hides overloaded virtual functions [-Woverloaded-virtual]
      virtual Int_t Calculate(TTree *intree, const char *leafname,
                    ^
./XPSFilter.h:117:21: note: hidden overloaded virtual function 'XFilter::Calculate' declared here: different number of parameters (4 vs 5)
      virtual Int_t Calculate(TTree * /*intree*/, const char * /*leafname*/,
                    ^
./XPSFilter.h:119:21: note: hidden overloaded virtual function 'XFilter::Calculate' declared here: type mismatch at 1st parameter ('Int_t' (aka 'int') vs 'TTree *')
      virtual Int_t Calculate(Int_t /*n*/, TTree ** /*intree*/, const char * /*leafname*/,
                    ^
XPSFilter.cxx:623:31: warning: unused parameter 'sepo' [-Wunused-parameter]
                  const char *sepo, char delim)
                              ^
XPSFilter.cxx:1353:38: warning: unused parameter 'table' [-Wunused-parameter]
Int_t XPreFilter::Entropy(Double_t **table)
                                     ^
XPSFilter.cxx:1630:41: warning: unused parameter 'infile' [-Wunused-parameter]
Int_t XUniFilter::Calculate(const char *infile, const char *outfile, 
                                        ^
XPSFilter.cxx:1630:61: warning: unused parameter 'outfile' [-Wunused-parameter]
Int_t XUniFilter::Calculate(const char *infile, const char *outfile, 
                                                            ^
XPSFilter.cxx:1631:31: warning: unused parameter 'varlist' [-Wunused-parameter]
                  const char *varlist, Int_t nrows, const char *sepi,
                              ^
XPSFilter.cxx:1631:46: warning: unused parameter 'nrows' [-Wunused-parameter]
                  const char *varlist, Int_t nrows, const char *sepi,
                                             ^
XPSFilter.cxx:1631:65: warning: unused parameter 'sepi' [-Wunused-parameter]
                  const char *varlist, Int_t nrows, const char *sepi,
                                                                ^
XPSFilter.cxx:1632:31: warning: unused parameter 'sepo' [-Wunused-parameter]
                  const char *sepo, char delim)
                              ^
XPSFilter.cxx:1632:42: warning: unused parameter 'delim' [-Wunused-parameter]
                  const char *sepo, char delim)
                                         ^
XPSFilter.cxx:1789:13: warning: unused variable 'brchUnit' [-Wunused-variable]
   TBranch *brchUnit = intree->GetBranch("fUnitID"); //prevent crash SafeDelete(fDataFile)
            ^
XPSFilter.cxx:1658:56: warning: unused parameter 'leafname' [-Wunused-parameter]
Int_t XUniFilter::Calculate(TTree *intree, const char *leafname, TTree *outtree,
                                                       ^
XPSFilter.cxx:1841:47: warning: unused parameter 'outtree' [-Wunused-parameter]
                  const char *varlist, TTree *outtree)
                                              ^
25 warnings generated.
clang++ -I/include -O2 -pipe -Wall -W -Woverloaded-virtual -pthread -stdlib=libc++ -m64 -I/usr/local/root/include/root -c XPSAnalyzer.cxx
XPSAnalyzer.cxx:38:17: warning: using directive refers to implicitly-defined namespace 'std'
using namespace std;
                ^
In file included from XPSAnalyzer.cxx:44:
In file included from ./XPSAnalyzer.h:45:
In file included from ./XPSProcessing.h:42:
In file included from ./XPSSchemes.h:41:
./XPSBase.h:208:25: warning: 'XTreeInfo::GetOption' hides overloaded virtual function [-Woverloaded-virtual]
      virtual Option_t *GetOption()                      {return fOption.Data();}
                        ^
/usr/local/root/include/root/TObject.h:127:24: note: hidden overloaded virtual function 'TObject::GetOption' declared here: different qualifiers (const vs none)
   virtual Option_t   *GetOption() const { return ""; }
                       ^
In file included from XPSAnalyzer.cxx:44:
In file included from ./XPSAnalyzer.h:45:
In file included from ./XPSProcessing.h:46:
In file included from ./XPSData.h:47:
./XPSProjectHandler.h:84:50: warning: unused parameter 'name' [-Wunused-parameter]
      virtual Int_t BeginTransaction(const char *name = "") {return 0;}
                                                 ^
In file included from XPSAnalyzer.cxx:44:
In file included from ./XPSAnalyzer.h:45:
In file included from ./XPSProcessing.h:46:
./XPSData.h:699:53: warning: unused parameter 'min' [-Wunused-parameter]
                       Option_t * /*opt*/, Double_t min = -1111, Double_t max = -1111,
                                                    ^
./XPSData.h:699:75: warning: unused parameter 'max' [-Wunused-parameter]
                       Option_t * /*opt*/, Double_t min = -1111, Double_t max = -1111,
                                                                          ^
./XPSData.h:700:36: warning: unused parameter 'var2sort' [-Wunused-parameter]
                       const char *var2sort = "", Bool_t down = kFALSE) {return 0;}
                                   ^
./XPSData.h:700:58: warning: unused parameter 'down' [-Wunused-parameter]
                       const char *var2sort = "", Bool_t down = kFALSE) {return 0;}
                                                         ^
./XPSData.h:1050:51: warning: explicitly assigning a variable of type 'Int_t' (aka 'int') to itself [-Wself-assign]
      virtual Double_t GetValue(Int_t id = 1) {id = id; return fLevel;}
                                               ˜˜ ^ ˜˜
XPSAnalyzer.cxx:214:42: warning: unused parameter 'type' [-Wunused-parameter]
Int_t XMultiTester::InitType(const char *type, Option_t *options, Int_t npars,
                                         ^
XPSAnalyzer.cxx:214:58: warning: unused parameter 'options' [-Wunused-parameter]
Int_t XMultiTester::InitType(const char *type, Option_t *options, Int_t npars,
                                                         ^
XPSAnalyzer.cxx:214:73: warning: unused parameter 'npars' [-Wunused-parameter]
Int_t XMultiTester::InitType(const char *type, Option_t *options, Int_t npars,
                                                                        ^
XPSAnalyzer.cxx:215:31: warning: unused parameter 'pars' [-Wunused-parameter]
                    Double_t *pars)
                              ^
XPSAnalyzer.cxx:227:41: warning: unused parameter 'infile' [-Wunused-parameter]
Int_t XMultiTester::Analyse(const char *infile, const char *outfile, 
                                        ^
XPSAnalyzer.cxx:227:61: warning: unused parameter 'outfile' [-Wunused-parameter]
Int_t XMultiTester::Analyse(const char *infile, const char *outfile, 
                                                            ^
XPSAnalyzer.cxx:228:33: warning: unused parameter 'varlist' [-Wunused-parameter]
                    const char *varlist, Int_t nrows, Int_t nperm, Double_t mu,
                                ^
XPSAnalyzer.cxx:228:48: warning: unused parameter 'nrows' [-Wunused-parameter]
                    const char *varlist, Int_t nrows, Int_t nperm, Double_t mu,
                                               ^
XPSAnalyzer.cxx:228:61: warning: unused parameter 'nperm' [-Wunused-parameter]
                    const char *varlist, Int_t nrows, Int_t nperm, Double_t mu,
                                                            ^
XPSAnalyzer.cxx:228:77: warning: unused parameter 'mu' [-Wunused-parameter]
                    const char *varlist, Int_t nrows, Int_t nperm, Double_t mu,
                                                                            ^
XPSAnalyzer.cxx:229:33: warning: unused parameter 'sepi' [-Wunused-parameter]
                    const char *sepi, const char *sepo, char delim, Int_t linebuf)
                                ^
XPSAnalyzer.cxx:229:51: warning: unused parameter 'sepo' [-Wunused-parameter]
                    const char *sepi, const char *sepo, char delim, Int_t linebuf)
                                                  ^
XPSAnalyzer.cxx:229:62: warning: unused parameter 'delim' [-Wunused-parameter]
                    const char *sepi, const char *sepo, char delim, Int_t linebuf)
                                                             ^
XPSAnalyzer.cxx:229:75: warning: unused parameter 'linebuf' [-Wunused-parameter]
                    const char *sepi, const char *sepo, char delim, Int_t linebuf)
                                                                          ^
XPSAnalyzer.cxx:240:35: warning: unused parameter 'n' [-Wunused-parameter]
Int_t XMultiTester::Analyse(Int_t n, Int_t *gid, TTree **intree, const char *leafname,
                                  ^
XPSAnalyzer.cxx:240:45: warning: unused parameter 'gid' [-Wunused-parameter]
Int_t XMultiTester::Analyse(Int_t n, Int_t *gid, TTree **intree, const char *leafname,
                                            ^
XPSAnalyzer.cxx:240:58: warning: unused parameter 'intree' [-Wunused-parameter]
Int_t XMultiTester::Analyse(Int_t n, Int_t *gid, TTree **intree, const char *leafname,
                                                         ^
XPSAnalyzer.cxx:240:78: warning: unused parameter 'leafname' [-Wunused-parameter]
Int_t XMultiTester::Analyse(Int_t n, Int_t *gid, TTree **intree, const char *leafname,
                                                                             ^
XPSAnalyzer.cxx:241:28: warning: unused parameter 'outtree' [-Wunused-parameter]
                    TTree *outtree, const char *varlist, Int_t nperm, Double_t mu)
                           ^
XPSAnalyzer.cxx:241:49: warning: unused parameter 'varlist' [-Wunused-parameter]
                    TTree *outtree, const char *varlist, Int_t nperm, Double_t mu)
                                                ^
XPSAnalyzer.cxx:241:64: warning: unused parameter 'nperm' [-Wunused-parameter]
                    TTree *outtree, const char *varlist, Int_t nperm, Double_t mu)
                                                               ^
XPSAnalyzer.cxx:241:80: warning: unused parameter 'mu' [-Wunused-parameter]
                    TTree *outtree, const char *varlist, Int_t nperm, Double_t mu)
                                                                               ^
XPSAnalyzer.cxx:289:42: warning: unused parameter 'type' [-Wunused-parameter]
Int_t XClusterizer::InitType(const char *type, Option_t *options, Int_t npars,
                                         ^
XPSAnalyzer.cxx:289:58: warning: unused parameter 'options' [-Wunused-parameter]
Int_t XClusterizer::InitType(const char *type, Option_t *options, Int_t npars,
                                                         ^
XPSAnalyzer.cxx:289:73: warning: unused parameter 'npars' [-Wunused-parameter]
Int_t XClusterizer::InitType(const char *type, Option_t *options, Int_t npars,
                                                                        ^
XPSAnalyzer.cxx:290:31: warning: unused parameter 'pars' [-Wunused-parameter]
                    Double_t *pars)
                              ^
XPSAnalyzer.cxx:302:41: warning: unused parameter 'infile' [-Wunused-parameter]
Int_t XClusterizer::Analyse(const char *infile, const char *outfile, 
                                        ^
XPSAnalyzer.cxx:302:61: warning: unused parameter 'outfile' [-Wunused-parameter]
Int_t XClusterizer::Analyse(const char *infile, const char *outfile, 
                                                            ^
XPSAnalyzer.cxx:303:33: warning: unused parameter 'varlist' [-Wunused-parameter]
                    const char *varlist, Int_t nrows, Int_t nperm, Double_t mu,
                                ^
XPSAnalyzer.cxx:303:48: warning: unused parameter 'nrows' [-Wunused-parameter]
                    const char *varlist, Int_t nrows, Int_t nperm, Double_t mu,
                                               ^
XPSAnalyzer.cxx:303:61: warning: unused parameter 'nperm' [-Wunused-parameter]
                    const char *varlist, Int_t nrows, Int_t nperm, Double_t mu,
                                                            ^
XPSAnalyzer.cxx:303:77: warning: unused parameter 'mu' [-Wunused-parameter]
                    const char *varlist, Int_t nrows, Int_t nperm, Double_t mu,
                                                                            ^
XPSAnalyzer.cxx:304:33: warning: unused parameter 'sepi' [-Wunused-parameter]
                    const char *sepi, const char *sepo, char delim, Int_t linebuf)
                                ^
XPSAnalyzer.cxx:304:51: warning: unused parameter 'sepo' [-Wunused-parameter]
                    const char *sepi, const char *sepo, char delim, Int_t linebuf)
                                                  ^
XPSAnalyzer.cxx:304:62: warning: unused parameter 'delim' [-Wunused-parameter]
                    const char *sepi, const char *sepo, char delim, Int_t linebuf)
                                                             ^
XPSAnalyzer.cxx:304:75: warning: unused parameter 'linebuf' [-Wunused-parameter]
                    const char *sepi, const char *sepo, char delim, Int_t linebuf)
                                                                          ^
XPSAnalyzer.cxx:315:35: warning: unused parameter 'n' [-Wunused-parameter]
Int_t XClusterizer::Analyse(Int_t n, Int_t *gid, TTree **intree, const char *leafname,
                                  ^
XPSAnalyzer.cxx:315:45: warning: unused parameter 'gid' [-Wunused-parameter]
Int_t XClusterizer::Analyse(Int_t n, Int_t *gid, TTree **intree, const char *leafname,
                                            ^
XPSAnalyzer.cxx:315:58: warning: unused parameter 'intree' [-Wunused-parameter]
Int_t XClusterizer::Analyse(Int_t n, Int_t *gid, TTree **intree, const char *leafname,
                                                         ^
XPSAnalyzer.cxx:315:78: warning: unused parameter 'leafname' [-Wunused-parameter]
Int_t XClusterizer::Analyse(Int_t n, Int_t *gid, TTree **intree, const char *leafname,
                                                                             ^
XPSAnalyzer.cxx:316:28: warning: unused parameter 'outtree' [-Wunused-parameter]
                    TTree *outtree, const char *varlist, Int_t nperm, Double_t mu)
                           ^
XPSAnalyzer.cxx:316:49: warning: unused parameter 'varlist' [-Wunused-parameter]
                    TTree *outtree, const char *varlist, Int_t nperm, Double_t mu)
                                                ^
XPSAnalyzer.cxx:316:64: warning: unused parameter 'nperm' [-Wunused-parameter]
                    TTree *outtree, const char *varlist, Int_t nperm, Double_t mu)
                                                               ^
XPSAnalyzer.cxx:316:80: warning: unused parameter 'mu' [-Wunused-parameter]
                    TTree *outtree, const char *varlist, Int_t nperm, Double_t mu)
                                                                               ^
XPSAnalyzer.cxx:364:40: warning: unused parameter 'type' [-Wunused-parameter]
Int_t XRegressor::InitType(const char *type, Option_t *options, Int_t npars,
                                       ^
XPSAnalyzer.cxx:364:56: warning: unused parameter 'options' [-Wunused-parameter]
Int_t XRegressor::InitType(const char *type, Option_t *options, Int_t npars,
                                                       ^
XPSAnalyzer.cxx:364:71: warning: unused parameter 'npars' [-Wunused-parameter]
Int_t XRegressor::InitType(const char *type, Option_t *options, Int_t npars,
                                                                      ^
XPSAnalyzer.cxx:365:29: warning: unused parameter 'pars' [-Wunused-parameter]
                  Double_t *pars)
                            ^
XPSAnalyzer.cxx:377:39: warning: unused parameter 'infile' [-Wunused-parameter]
Int_t XRegressor::Analyse(const char *infile, const char *outfile, 
                                      ^
XPSAnalyzer.cxx:377:59: warning: unused parameter 'outfile' [-Wunused-parameter]
Int_t XRegressor::Analyse(const char *infile, const char *outfile, 
                                                          ^
XPSAnalyzer.cxx:378:31: warning: unused parameter 'varlist' [-Wunused-parameter]
                  const char *varlist, Int_t nrows, Int_t nperm, Double_t mu,
                              ^
XPSAnalyzer.cxx:378:46: warning: unused parameter 'nrows' [-Wunused-parameter]
                  const char *varlist, Int_t nrows, Int_t nperm, Double_t mu,
                                             ^
XPSAnalyzer.cxx:378:59: warning: unused parameter 'nperm' [-Wunused-parameter]
                  const char *varlist, Int_t nrows, Int_t nperm, Double_t mu,
                                                          ^
XPSAnalyzer.cxx:378:75: warning: unused parameter 'mu' [-Wunused-parameter]
                  const char *varlist, Int_t nrows, Int_t nperm, Double_t mu,
                                                                          ^
XPSAnalyzer.cxx:379:31: warning: unused parameter 'sepi' [-Wunused-parameter]
                  const char *sepi, const char *sepo, char delim, Int_t linebuf)
                              ^
XPSAnalyzer.cxx:379:49: warning: unused parameter 'sepo' [-Wunused-parameter]
                  const char *sepi, const char *sepo, char delim, Int_t linebuf)
                                                ^
XPSAnalyzer.cxx:379:60: warning: unused parameter 'delim' [-Wunused-parameter]
                  const char *sepi, const char *sepo, char delim, Int_t linebuf)
                                                           ^
XPSAnalyzer.cxx:379:73: warning: unused parameter 'linebuf' [-Wunused-parameter]
                  const char *sepi, const char *sepo, char delim, Int_t linebuf)
                                                                        ^
XPSAnalyzer.cxx:390:33: warning: unused parameter 'n' [-Wunused-parameter]
Int_t XRegressor::Analyse(Int_t n, Int_t *gid, TTree **intree, const char *leafname,
                                ^
XPSAnalyzer.cxx:390:43: warning: unused parameter 'gid' [-Wunused-parameter]
Int_t XRegressor::Analyse(Int_t n, Int_t *gid, TTree **intree, const char *leafname,
                                          ^
XPSAnalyzer.cxx:390:56: warning: unused parameter 'intree' [-Wunused-parameter]
Int_t XRegressor::Analyse(Int_t n, Int_t *gid, TTree **intree, const char *leafname,
                                                       ^
XPSAnalyzer.cxx:390:76: warning: unused parameter 'leafname' [-Wunused-parameter]
Int_t XRegressor::Analyse(Int_t n, Int_t *gid, TTree **intree, const char *leafname,
                                                                           ^
XPSAnalyzer.cxx:391:26: warning: unused parameter 'outtree' [-Wunused-parameter]
                  TTree *outtree, const char *varlist, Int_t nperm, Double_t mu)
                         ^
XPSAnalyzer.cxx:391:47: warning: unused parameter 'varlist' [-Wunused-parameter]
                  TTree *outtree, const char *varlist, Int_t nperm, Double_t mu)
                                              ^
XPSAnalyzer.cxx:391:62: warning: unused parameter 'nperm' [-Wunused-parameter]
                  TTree *outtree, const char *varlist, Int_t nperm, Double_t mu)
                                                             ^
XPSAnalyzer.cxx:391:78: warning: unused parameter 'mu' [-Wunused-parameter]
                  TTree *outtree, const char *varlist, Int_t nperm, Double_t mu)
                                                                             ^
XPSAnalyzer.cxx:53:15: warning: unused variable 'kCSa' [-Wunused-const-variable]
const Bool_t  kCSa = 0; //debug: print function names in loops
              ^
75 warnings generated.
clang++ -I/include -O2 -pipe -Wall -W -Woverloaded-virtual -pthread -stdlib=libc++ -m64 -I/usr/local/root/include/root -c XPSAnalysis.cxx
XPSAnalysis.cxx:51:17: warning: using directive refers to implicitly-defined namespace 'std'
using namespace std;
                ^
In file included from XPSAnalysis.cxx:65:
In file included from ./XPSAnalysis.h:41:
In file included from ./XPSSchemes.h:41:
./XPSBase.h:208:25: warning: 'XTreeInfo::GetOption' hides overloaded virtual function [-Woverloaded-virtual]
      virtual Option_t *GetOption()                      {return fOption.Data();}
                        ^
/usr/local/root/include/root/TObject.h:127:24: note: hidden overloaded virtual function 'TObject::GetOption' declared here: different qualifiers (const vs none)
   virtual Option_t   *GetOption() const { return ""; }
                       ^
In file included from XPSAnalysis.cxx:65:
In file included from ./XPSAnalysis.h:44:
In file included from ./XPSProcessing.h:46:
In file included from ./XPSData.h:47:
./XPSProjectHandler.h:84:50: warning: unused parameter 'name' [-Wunused-parameter]
      virtual Int_t BeginTransaction(const char *name = "") {return 0;}
                                                 ^
In file included from XPSAnalysis.cxx:65:
In file included from ./XPSAnalysis.h:44:
In file included from ./XPSProcessing.h:46:
./XPSData.h:699:53: warning: unused parameter 'min' [-Wunused-parameter]
                       Option_t * /*opt*/, Double_t min = -1111, Double_t max = -1111,
                                                    ^
./XPSData.h:699:75: warning: unused parameter 'max' [-Wunused-parameter]
                       Option_t * /*opt*/, Double_t min = -1111, Double_t max = -1111,
                                                                          ^
./XPSData.h:700:36: warning: unused parameter 'var2sort' [-Wunused-parameter]
                       const char *var2sort = "", Bool_t down = kFALSE) {return 0;}
                                   ^
./XPSData.h:700:58: warning: unused parameter 'down' [-Wunused-parameter]
                       const char *var2sort = "", Bool_t down = kFALSE) {return 0;}
                                                         ^
./XPSData.h:1050:51: warning: explicitly assigning a variable of type 'Int_t' (aka 'int') to itself [-Wself-assign]
      virtual Double_t GetValue(Int_t id = 1) {id = id; return fLevel;}
                                               ˜˜ ^ ˜˜
In file included from XPSAnalysis.cxx:66:
In file included from ./XPSFilter.h:49:
./TStat.h:332:37: warning: unused parameter 'x' [-Wunused-parameter]
      virtual Double_t Rho(Double_t x)        {return 0;}
                                    ^
./TStat.h:333:37: warning: unused parameter 'x' [-Wunused-parameter]
      virtual Double_t Psi(Double_t x)        {return 0;}
                                    ^
./TStat.h:334:44: warning: unused parameter 'x' [-Wunused-parameter]
      virtual Double_t Derivative(Double_t x) {return 0;}
                                           ^
./TStat.h:335:40: warning: unused parameter 'x' [-Wunused-parameter]
      virtual Double_t Weight(Double_t x)     {return 0;}
                                       ^
In file included from XPSAnalysis.cxx:66:
./XPSFilter.h:363:21: warning: 'XUniFilter::Calculate' hides overloaded virtual functions [-Woverloaded-virtual]
      virtual Int_t Calculate(TTree *intree, const char *leafname,
                    ^
./XPSFilter.h:117:21: note: hidden overloaded virtual function 'XFilter::Calculate' declared here: different number of parameters (4 vs 5)
      virtual Int_t Calculate(TTree * /*intree*/, const char * /*leafname*/,
                    ^
./XPSFilter.h:119:21: note: hidden overloaded virtual function 'XFilter::Calculate' declared here: type mismatch at 1st parameter ('Int_t' (aka 'int') vs 'TTree *')
      virtual Int_t Calculate(Int_t /*n*/, TTree ** /*intree*/, const char * /*leafname*/,
                    ^
XPSAnalysis.cxx:268:52: warning: unused parameter 'infile' [-Wunused-parameter]
Int_t XAnalysisManager::ImportDefaults(const char *infile)
                                                   ^
XPSAnalysis.cxx:446:66: warning: unused parameter 'type' [-Wunused-parameter]
void XAnalySetting::ResetAlgorithm(const char *name, const char *type)
                                                                 ^
XPSAnalysis.cxx:966:36: warning: unused parameter 'ntree' [-Wunused-parameter]
Int_t XAnalySet::GetCallMask(Int_t ntree, TTree **tree, Int_t n, Int_t *msk)
                                   ^
XPSAnalysis.cxx:966:51: warning: unused parameter 'tree' [-Wunused-parameter]
Int_t XAnalySet::GetCallMask(Int_t ntree, TTree **tree, Int_t n, Int_t *msk)
                                                  ^
XPSAnalysis.cxx:966:63: warning: unused parameter 'n' [-Wunused-parameter]
Int_t XAnalySet::GetCallMask(Int_t ntree, TTree **tree, Int_t n, Int_t *msk)
                                                              ^
XPSAnalysis.cxx:966:73: warning: unused parameter 'msk' [-Wunused-parameter]
Int_t XAnalySet::GetCallMask(Int_t ntree, TTree **tree, Int_t n, Int_t *msk)
                                                                        ^
XPSAnalysis.cxx:1710:48: warning: unused parameter 'exten' [-Wunused-parameter]
Int_t XPreFilterSet::ExportTreeXML(const char *exten, Int_t n, TString *names, 
                                               ^
XPSAnalysis.cxx:1710:61: warning: unused parameter 'n' [-Wunused-parameter]
Int_t XPreFilterSet::ExportTreeXML(const char *exten, Int_t n, TString *names, 
                                                            ^
XPSAnalysis.cxx:1710:73: warning: unused parameter 'names' [-Wunused-parameter]
Int_t XPreFilterSet::ExportTreeXML(const char *exten, Int_t n, TString *names, 
                                                                        ^
XPSAnalysis.cxx:1711:34: warning: unused parameter 'varlist' [-Wunused-parameter]
                     const char *varlist, ofstream &output, const char *sep)
                                 ^
XPSAnalysis.cxx:1711:53: warning: unused parameter 'output' [-Wunused-parameter]
                     const char *varlist, ofstream &output, const char *sep)
                                                    ^
XPSAnalysis.cxx:1711:73: warning: unused parameter 'sep' [-Wunused-parameter]
                     const char *varlist, ofstream &output, const char *sep)
                                                                        ^
XPSAnalysis.cxx:2002:45: warning: unused parameter 'exten' [-Wunused-parameter]
Int_t XUnivarSet::ExportTreeXML(const char *exten, Int_t n, TString *names, 
                                            ^
XPSAnalysis.cxx:2002:58: warning: unused parameter 'n' [-Wunused-parameter]
Int_t XUnivarSet::ExportTreeXML(const char *exten, Int_t n, TString *names, 
                                                         ^
XPSAnalysis.cxx:2002:70: warning: unused parameter 'names' [-Wunused-parameter]
Int_t XUnivarSet::ExportTreeXML(const char *exten, Int_t n, TString *names, 
                                                                     ^
XPSAnalysis.cxx:2003:31: warning: unused parameter 'varlist' [-Wunused-parameter]
                  const char *varlist, ofstream &output, const char *sep)
                              ^
XPSAnalysis.cxx:2003:50: warning: unused parameter 'output' [-Wunused-parameter]
                  const char *varlist, ofstream &output, const char *sep)
                                                 ^
XPSAnalysis.cxx:2003:70: warning: unused parameter 'sep' [-Wunused-parameter]
                  const char *varlist, ofstream &output, const char *sep)
                                                                     ^
XPSAnalysis.cxx:2654:32: warning: unused parameter 'n' [-Wunused-parameter]
Int_t XUnivarSet::Filter(Int_t n, TTree **tree, const char *leafname, Int_t nc,
                               ^
XPSAnalysis.cxx:2654:43: warning: unused parameter 'tree' [-Wunused-parameter]
Int_t XUnivarSet::Filter(Int_t n, TTree **tree, const char *leafname, Int_t nc,
                                          ^
XPSAnalysis.cxx:2792:41: warning: unused parameter 'leafname' [-Wunused-parameter]
Int_t XMultivarSet::Analyse(const char *leafname, const char *outtree,
                                        ^
XPSAnalysis.cxx:2792:63: warning: unused parameter 'outtree' [-Wunused-parameter]
Int_t XMultivarSet::Analyse(const char *leafname, const char *outtree,
                                                              ^
XPSAnalysis.cxx:2793:33: warning: unused parameter 'varlist' [-Wunused-parameter]
                    const char *varlist)
                                ^
XPSAnalysis.cxx:2820:47: warning: unused parameter 'exten' [-Wunused-parameter]
Int_t XMultivarSet::ExportTreeXML(const char *exten, Int_t n, TString *names, 
                                              ^
XPSAnalysis.cxx:2820:60: warning: unused parameter 'n' [-Wunused-parameter]
Int_t XMultivarSet::ExportTreeXML(const char *exten, Int_t n, TString *names, 
                                                           ^
XPSAnalysis.cxx:2820:72: warning: unused parameter 'names' [-Wunused-parameter]
Int_t XMultivarSet::ExportTreeXML(const char *exten, Int_t n, TString *names, 
                                                                       ^
XPSAnalysis.cxx:2821:33: warning: unused parameter 'varlist' [-Wunused-parameter]
                    const char *varlist, ofstream &output, const char *sep)
                                ^
XPSAnalysis.cxx:2821:52: warning: unused parameter 'output' [-Wunused-parameter]
                    const char *varlist, ofstream &output, const char *sep)
                                                   ^
XPSAnalysis.cxx:2821:72: warning: unused parameter 'sep' [-Wunused-parameter]
                    const char *varlist, ofstream &output, const char *sep)
                                                                       ^
XPSAnalysis.cxx:2868:47: warning: unused parameter 'n' [-Wunused-parameter]
Int_t XMultivarSet::ExportMultivarTrees(Int_t n, TString *names, const char *varlist,
                                              ^
XPSAnalysis.cxx:2868:59: warning: unused parameter 'names' [-Wunused-parameter]
Int_t XMultivarSet::ExportMultivarTrees(Int_t n, TString *names, const char *varlist,
                                                          ^
XPSAnalysis.cxx:2868:78: warning: unused parameter 'varlist' [-Wunused-parameter]
Int_t XMultivarSet::ExportMultivarTrees(Int_t n, TString *names, const char *varlist,
                                                                             ^
XPSAnalysis.cxx:2869:31: warning: unused parameter 'output' [-Wunused-parameter]
                    ofstream &output, const char *sep)
                              ^
XPSAnalysis.cxx:2869:51: warning: unused parameter 'sep' [-Wunused-parameter]
                    ofstream &output, const char *sep)
                                                  ^
XPSAnalysis.cxx:2937:40: warning: unused parameter 'leafname' [-Wunused-parameter]
Int_t XClusterSet::Analyse(const char *leafname, const char *outtree,
                                       ^
XPSAnalysis.cxx:2937:62: warning: unused parameter 'outtree' [-Wunused-parameter]
Int_t XClusterSet::Analyse(const char *leafname, const char *outtree,
                                                             ^
XPSAnalysis.cxx:2938:32: warning: unused parameter 'varlist' [-Wunused-parameter]
                   const char *varlist)
                               ^
XPSAnalysis.cxx:2965:46: warning: unused parameter 'exten' [-Wunused-parameter]
Int_t XClusterSet::ExportTreeXML(const char *exten, Int_t n, TString *names, 
                                             ^
XPSAnalysis.cxx:2965:59: warning: unused parameter 'n' [-Wunused-parameter]
Int_t XClusterSet::ExportTreeXML(const char *exten, Int_t n, TString *names, 
                                                          ^
XPSAnalysis.cxx:2965:71: warning: unused parameter 'names' [-Wunused-parameter]
Int_t XClusterSet::ExportTreeXML(const char *exten, Int_t n, TString *names, 
                                                                      ^
XPSAnalysis.cxx:2966:32: warning: unused parameter 'varlist' [-Wunused-parameter]
                   const char *varlist, ofstream &output, const char *sep)
                               ^
XPSAnalysis.cxx:2966:51: warning: unused parameter 'output' [-Wunused-parameter]
                   const char *varlist, ofstream &output, const char *sep)
                                                  ^
XPSAnalysis.cxx:2966:71: warning: unused parameter 'sep' [-Wunused-parameter]
                   const char *varlist, ofstream &output, const char *sep)
                                                                      ^
XPSAnalysis.cxx:3007:45: warning: unused parameter 'n' [-Wunused-parameter]
Int_t XClusterSet::ExportClusterTrees(Int_t n, TString *names, const char *varlist,
                                            ^
XPSAnalysis.cxx:3007:57: warning: unused parameter 'names' [-Wunused-parameter]
Int_t XClusterSet::ExportClusterTrees(Int_t n, TString *names, const char *varlist,
                                                        ^
XPSAnalysis.cxx:3007:76: warning: unused parameter 'varlist' [-Wunused-parameter]
Int_t XClusterSet::ExportClusterTrees(Int_t n, TString *names, const char *varlist,
                                                                           ^
XPSAnalysis.cxx:3008:30: warning: unused parameter 'output' [-Wunused-parameter]
                   ofstream &output, const char *sep)
                             ^
XPSAnalysis.cxx:3008:50: warning: unused parameter 'sep' [-Wunused-parameter]
                   ofstream &output, const char *sep)
                                                 ^
XPSAnalysis.cxx:3076:43: warning: unused parameter 'leafname' [-Wunused-parameter]
Int_t XRegressionSet::Analyse(const char *leafname, const char *outtree,
                                          ^
XPSAnalysis.cxx:3076:65: warning: unused parameter 'outtree' [-Wunused-parameter]
Int_t XRegressionSet::Analyse(const char *leafname, const char *outtree,
                                                                ^
XPSAnalysis.cxx:3077:35: warning: unused parameter 'varlist' [-Wunused-parameter]
                      const char *varlist)
                                  ^
XPSAnalysis.cxx:3104:49: warning: unused parameter 'exten' [-Wunused-parameter]
Int_t XRegressionSet::ExportTreeXML(const char *exten, Int_t n, TString *names, 
                                                ^
XPSAnalysis.cxx:3104:62: warning: unused parameter 'n' [-Wunused-parameter]
Int_t XRegressionSet::ExportTreeXML(const char *exten, Int_t n, TString *names, 
                                                             ^
XPSAnalysis.cxx:3104:74: warning: unused parameter 'names' [-Wunused-parameter]
Int_t XRegressionSet::ExportTreeXML(const char *exten, Int_t n, TString *names, 
                                                                         ^
XPSAnalysis.cxx:3105:35: warning: unused parameter 'varlist' [-Wunused-parameter]
                      const char *varlist, ofstream &output, const char *sep)
                                  ^
XPSAnalysis.cxx:3105:54: warning: unused parameter 'output' [-Wunused-parameter]
                      const char *varlist, ofstream &output, const char *sep)
                                                     ^
XPSAnalysis.cxx:3105:74: warning: unused parameter 'sep' [-Wunused-parameter]
                      const char *varlist, ofstream &output, const char *sep)
                                                                         ^
XPSAnalysis.cxx:3146:51: warning: unused parameter 'n' [-Wunused-parameter]
Int_t XRegressionSet::ExportRegressionTrees(Int_t n, TString *names, const char *varlist,
                                                  ^
XPSAnalysis.cxx:3146:63: warning: unused parameter 'names' [-Wunused-parameter]
Int_t XRegressionSet::ExportRegressionTrees(Int_t n, TString *names, const char *varlist,
                                                              ^
XPSAnalysis.cxx:3146:82: warning: unused parameter 'varlist' [-Wunused-parameter]
Int_t XRegressionSet::ExportRegressionTrees(Int_t n, TString *names, const char *varlist,
                                                                                 ^
XPSAnalysis.cxx:3147:33: warning: unused parameter 'output' [-Wunused-parameter]
                      ofstream &output, const char *sep)
                                ^
XPSAnalysis.cxx:3147:53: warning: unused parameter 'sep' [-Wunused-parameter]
                      ofstream &output, const char *sep)
                                                    ^
XPSAnalysis.cxx:79:15: warning: unused variable 'kCSa' [-Wunused-const-variable]
const Bool_t  kCSa = 0; //debug: print function names in loops
              ^
76 warnings generated.
clang++ -I/include -O2 -pipe -Wall -W -Woverloaded-virtual -pthread -stdlib=libc++ -m64 -I/usr/local/root/include/root -c rwrapper.cxx
rwrapper.cxx:31:17: warning: using directive refers to implicitly-defined namespace 'std'
using namespace std;
                ^
In file included from rwrapper.cxx:44:
./XPSBase.h:208:25: warning: 'XTreeInfo::GetOption' hides overloaded virtual function [-Woverloaded-virtual]
      virtual Option_t *GetOption()                      {return fOption.Data();}
                        ^
/usr/local/root/include/root/TObject.h:127:24: note: hidden overloaded virtual function 'TObject::GetOption' declared here: different qualifiers (const vs none)
   virtual Option_t   *GetOption() const { return ""; }
                       ^
In file included from rwrapper.cxx:47:
In file included from ./XPSData.h:47:
./XPSProjectHandler.h:84:50: warning: unused parameter 'name' [-Wunused-parameter]
      virtual Int_t BeginTransaction(const char *name = "") {return 0;}
                                                 ^
In file included from rwrapper.cxx:47:
./XPSData.h:699:53: warning: unused parameter 'min' [-Wunused-parameter]
                       Option_t * /*opt*/, Double_t min = -1111, Double_t max = -1111,
                                                    ^
./XPSData.h:699:75: warning: unused parameter 'max' [-Wunused-parameter]
                       Option_t * /*opt*/, Double_t min = -1111, Double_t max = -1111,
                                                                          ^
./XPSData.h:700:36: warning: unused parameter 'var2sort' [-Wunused-parameter]
                       const char *var2sort = "", Bool_t down = kFALSE) {return 0;}
                                   ^
./XPSData.h:700:58: warning: unused parameter 'down' [-Wunused-parameter]
                       const char *var2sort = "", Bool_t down = kFALSE) {return 0;}
                                                         ^
./XPSData.h:1050:51: warning: explicitly assigning a variable of type 'Int_t' (aka 'int') to itself [-Wself-assign]
      virtual Double_t GetValue(Int_t id = 1) {id = id; return fLevel;}
                                               ˜˜ ^ ˜˜
In file included from rwrapper.cxx:48:
./XPSPreProcessing.h:394:21: warning: 'XGCProcesSet::QualityControl' hides overloaded virtual function [-Woverloaded-virtual]
      virtual Int_t QualityControl(Int_t numdata, TTree **datatree,
                    ^
./XPSPreProcessing.h:323:21: note: hidden overloaded virtual function 'XPreProcesSet::QualityControl' declared here: different number of parameters (4 vs 5)
      virtual Int_t QualityControl(Int_t /*numdata*/, TTree ** /*datatree*/,
                    ^
rwrapper.cxx:1557:22: warning: unused parameter 'level' [-Wunused-parameter]
                int *level, char **treeset, char **datafile, char **treenames, int *ntrees,
                     ^
10 warnings generated.
Generating dictionary xpsDict.cxx...
clang++ -I/include -O2 -pipe -Wall -W -Woverloaded-virtual -pthread -stdlib=libc++ -m64 -I/usr/local/root/include/root -c xpsDict.cxx
In file included from xpsDict.cxx:17:
In file included from ./xpsDict.h:35:
./TStat.h:332:37: warning: unused parameter 'x' [-Wunused-parameter]
      virtual Double_t Rho(Double_t x)        {return 0;}
                                    ^
./TStat.h:333:37: warning: unused parameter 'x' [-Wunused-parameter]
      virtual Double_t Psi(Double_t x)        {return 0;}
                                    ^
./TStat.h:334:44: warning: unused parameter 'x' [-Wunused-parameter]
      virtual Double_t Derivative(Double_t x) {return 0;}
                                           ^
./TStat.h:335:40: warning: unused parameter 'x' [-Wunused-parameter]
      virtual Double_t Weight(Double_t x)     {return 0;}
                                       ^
In file included from xpsDict.cxx:17:
In file included from ./xpsDict.h:37:
./XPSBase.h:208:25: warning: 'XTreeInfo::GetOption' hides overloaded virtual function [-Woverloaded-virtual]
      virtual Option_t *GetOption()                      {return fOption.Data();}
                        ^
/usr/local/root/include/root/TObject.h:127:24: note: hidden overloaded virtual function 'TObject::GetOption' declared here: different qualifiers (const vs none)
   virtual Option_t   *GetOption() const { return ""; }
                       ^
In file included from xpsDict.cxx:17:
In file included from ./xpsDict.h:41:
./XPSProjectHandler.h:84:50: warning: unused parameter 'name' [-Wunused-parameter]
      virtual Int_t BeginTransaction(const char *name = "") {return 0;}
                                                 ^
In file included from xpsDict.cxx:17:
In file included from ./xpsDict.h:42:
./XPSData.h:699:53: warning: unused parameter 'min' [-Wunused-parameter]
                       Option_t * /*opt*/, Double_t min = -1111, Double_t max = -1111,
                                                    ^
./XPSData.h:699:75: warning: unused parameter 'max' [-Wunused-parameter]
                       Option_t * /*opt*/, Double_t min = -1111, Double_t max = -1111,
                                                                          ^
./XPSData.h:700:36: warning: unused parameter 'var2sort' [-Wunused-parameter]
                       const char *var2sort = "", Bool_t down = kFALSE) {return 0;}
                                   ^
./XPSData.h:700:58: warning: unused parameter 'down' [-Wunused-parameter]
                       const char *var2sort = "", Bool_t down = kFALSE) {return 0;}
                                                         ^
./XPSData.h:1050:51: warning: explicitly assigning a variable of type 'Int_t' (aka 'int') to itself [-Wself-assign]
      virtual Double_t GetValue(Int_t id = 1) {id = id; return fLevel;}
                                               ˜˜ ^ ˜˜
In file included from xpsDict.cxx:17:
In file included from ./xpsDict.h:44:
./XPSHybridizer.h:177:37: warning: unused parameter 'n' [-Wunused-parameter]
      virtual Int_t Calculate(Int_t n, Double_t *x, Double_t *y, Double_t *z,
                                    ^
./XPSHybridizer.h:177:50: warning: unused parameter 'x' [-Wunused-parameter]
      virtual Int_t Calculate(Int_t n, Double_t *x, Double_t *y, Double_t *z,
                                                 ^
./XPSHybridizer.h:177:63: warning: unused parameter 'y' [-Wunused-parameter]
      virtual Int_t Calculate(Int_t n, Double_t *x, Double_t *y, Double_t *z,
                                                              ^
./XPSHybridizer.h:177:76: warning: unused parameter 'z' [-Wunused-parameter]
      virtual Int_t Calculate(Int_t n, Double_t *x, Double_t *y, Double_t *z,
                                                                           ^
./XPSHybridizer.h:178:34: warning: unused parameter 'dx' [-Wunused-parameter]
                       Double_t *dx, Double_t *dy, Int_t *idx, Int_t nsub)
                                 ^
./XPSHybridizer.h:178:48: warning: unused parameter 'dy' [-Wunused-parameter]
                       Double_t *dx, Double_t *dy, Int_t *idx, Int_t nsub)
                                               ^
./XPSHybridizer.h:178:59: warning: unused parameter 'idx' [-Wunused-parameter]
                       Double_t *dx, Double_t *dy, Int_t *idx, Int_t nsub)
                                                          ^
./XPSHybridizer.h:178:70: warning: unused parameter 'nsub' [-Wunused-parameter]
                       Double_t *dx, Double_t *dy, Int_t *idx, Int_t nsub)
                                                                     ^
./XPSHybridizer.h:564:21: warning: 'XArithmeticMean::Calculate' hides overloaded virtual function [-Woverloaded-virtual]
      virtual Int_t Calculate(Double_t &value1, Double_t &value2, Int_t &num);
                    ^
./XPSHybridizer.h:177:21: note: hidden overloaded virtual function 'XExpressor::Calculate' declared here: different number of parameters (8 vs 3)
      virtual Int_t Calculate(Int_t n, Double_t *x, Double_t *y, Double_t *z,
                    ^
./XPSHybridizer.h:655:21: warning: 'XWeightedDiff::Calculate' hides overloaded virtual function [-Woverloaded-virtual]
      virtual Int_t Calculate(Double_t &value1, Double_t &value2, Int_t &num);
                    ^
./XPSHybridizer.h:177:21: note: hidden overloaded virtual function 'XExpressor::Calculate' declared here: different number of parameters (8 vs 3)
      virtual Int_t Calculate(Int_t n, Double_t *x, Double_t *y, Double_t *z,
                    ^
./XPSHybridizer.h:702:21: warning: 'XTukeyBiweight::Calculate' hides overloaded virtual function [-Woverloaded-virtual]
      virtual Int_t Calculate(Double_t &value1, Double_t &value2, Int_t &num);
                    ^
./XPSHybridizer.h:177:21: note: hidden overloaded virtual function 'XExpressor::Calculate' declared here: different number of parameters (8 vs 3)
      virtual Int_t Calculate(Int_t n, Double_t *x, Double_t *y, Double_t *z,
                    ^
./XPSHybridizer.h:724:21: warning: 'XMedianPolish::Calculate' hides overloaded virtual function [-Woverloaded-virtual]
      virtual Int_t Calculate(Int_t n, Double_t *x, Double_t *y, Int_t *msk);
                    ^
./XPSHybridizer.h:177:21: note: hidden overloaded virtual function 'XExpressor::Calculate' declared here: different number of parameters (8 vs 4)
      virtual Int_t Calculate(Int_t n, Double_t *x, Double_t *y, Double_t *z,
                    ^
./XPSHybridizer.h:755:21: warning: 'XFARMS::Calculate' hides overloaded virtual function [-Woverloaded-virtual]
      virtual Int_t Calculate(Int_t n, Double_t *x, Double_t *y, Int_t *msk);
                    ^
./XPSHybridizer.h:177:21: note: hidden overloaded virtual function 'XExpressor::Calculate' declared here: different number of parameters (8 vs 4)
      virtual Int_t Calculate(Int_t n, Double_t *x, Double_t *y, Double_t *z,
                    ^
./XPSHybridizer.h:780:21: warning: 'XDFW::Calculate' hides overloaded virtual function [-Woverloaded-virtual]
      virtual Int_t Calculate(Int_t n, Double_t *x, Double_t *y, Int_t *msk);
                    ^
./XPSHybridizer.h:177:21: note: hidden overloaded virtual function 'XExpressor::Calculate' declared here: different number of parameters (8 vs 4)
      virtual Int_t Calculate(Int_t n, Double_t *x, Double_t *y, Double_t *z,
                    ^
In file included from xpsDict.cxx:17:
In file included from ./xpsDict.h:47:
./XPSPreProcessing.h:394:21: warning: 'XGCProcesSet::QualityControl' hides overloaded virtual function [-Woverloaded-virtual]
      virtual Int_t QualityControl(Int_t numdata, TTree **datatree,
                    ^
./XPSPreProcessing.h:323:21: note: hidden overloaded virtual function 'XPreProcesSet::QualityControl' declared here: different number of parameters (4 vs 5)
      virtual Int_t QualityControl(Int_t /*numdata*/, TTree ** /*datatree*/,
                    ^
In file included from xpsDict.cxx:17:
In file included from ./xpsDict.h:49:
./XPSFilter.h:363:21: warning: 'XUniFilter::Calculate' hides overloaded virtual functions [-Woverloaded-virtual]
      virtual Int_t Calculate(TTree *intree, const char *leafname,
                    ^
./XPSFilter.h:117:21: note: hidden overloaded virtual function 'XFilter::Calculate' declared here: different number of parameters (4 vs 5)
      virtual Int_t Calculate(TTree * /*intree*/, const char * /*leafname*/,
                    ^
./XPSFilter.h:119:21: note: hidden overloaded virtual function 'XFilter::Calculate' declared here: type mismatch at 1st parameter ('Int_t' (aka 'int') vs 'TTree *')
      virtual Int_t Calculate(Int_t /*n*/, TTree ** /*intree*/, const char * /*leafname*/,
                    ^
27 warnings generated.
clang++ -dynamiclib -single_module -undefined dynamic_lookup -install_name /Users/biocbuild/bbs-3.2-bioc/meat/xps.Rcheck/00_pkg_src/xps/src/xps.so -O2 -m64 TMLMath.o TStat.o StatUtils.o XPSBase.o XPSUtils.o XPSSchemes.o XPSDataTypes.o XPSProjectHandler.o XPSData.o XPSProcessing.o XPSHybridizer.o XPSSelector.o XPSNormalizer.o XPSPreProcessing.o XPSNormation.o XPSFilter.o XPSAnalyzer.o XPSAnalysis.o rwrapper.o xpsDict.o -L/usr/local/root/lib/root -lGui -lCore -lCint -lRIO -lNet -lHist -lGraf -lGraf3d -lGpad -lTree -lRint -lPostscript -lMatrix -lPhysics -lMathCore -lThread -lpthread -stdlib=libc++ -lm -ldl  -lRIO -lGed -lTreePlayer -lTreeViewer -o  xps.so
installing to /Users/biocbuild/bbs-3.2-bioc/meat/xps.Rcheck/xps/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (xps)

name	user	system	elapsed
AffyRNAdeg	0.001	0.001	0.001
AnalysisTreeSet-class	0.002	0.000	0.003
CallTreeSet-class	0.002	0.001	0.002
DataTreeSet-class	0.003	0.000	0.003
ExprTreeSet-class	0.002	0.001	0.002
Filter-class	0.001	0.000	0.001
FilterTreeSet-class	0.002	0.001	0.003
NUSE	0.001	0.000	0.001
PreFilter-class	0.089	0.002	0.091
PreFilter-constructor	0.037	0.005	0.042
ProcesSet-class	0.002	0.000	0.002
ProjectInfo-class	0.012	0.001	0.012
ProjectInfo-constructor	0.064	0.003	0.066
QualTreeSet-class	0.002	0.001	0.002
RLE	0.001	0.000	0.001
SchemeTreeSet-class	0.002	0.000	0.002
TreeSet-class	0.001	0.000	0.002
UniFilter-class	0.019	0.001	0.020
UniFilter-constructor	0.030	0.001	0.030
addData-methods	0.317	0.022	0.473
attachCall-methods	0.347	0.010	0.358
attachDataXY-methods	0.164	0.036	0.199
attachExpr-methods	0.652	0.011	0.675
attachInten-methods	0.255	0.035	0.290
attachMask-methods	0.127	0.026	0.154
attachProbe-methods	0.159	0.031	0.190
attachUnitNames-methods	0.083	0.001	0.085
bgcorrect	0.528	0.081	0.613
borderplot-methods	0	0	0
boxplot-methods	0.383	0.065	0.490
callFilter-methods	0.018	0.000	0.019
coiplot-methods	0.001	0.000	0.000
cvFilter-methods	0.012	0.000	0.012
dabg.call	0.901	0.008	0.911
dfw	0.223	0.007	0.233
diffFilter-methods	0.012	0.000	0.013
existsROOTFile	0.001	0.000	0.001
exonLevel	0.001	0.000	0.001
export	0.498	0.040	0.543
export.root	0.532	0.056	0.591
express	0.561	0.011	0.577
exprs-methods	0.001	0.000	0.001
extenPart	0.001	0.000	0.002
farms	0.223	0.007	0.234
fcFilter-methods	0.013	0.000	0.013
firma	0.002	0.000	0.002
firma.expr	0.000	0.000	0.001
firma.score	0.001	0.000	0.001
fitQC	0.001	0.000	0.001
fitRLM	0.001	0.000	0.001
gapFilter-methods	0.020	0.001	0.021
getChipName	0.004	0.001	0.004
getChipType	0.004	0.000	0.004
getDatatype	0.001	0.000	0.001
getNameType	0.004	0.001	0.005
getNumberTrees	0.004	0.000	0.005
getProbeInfo	0.003	0.000	0.002
getTreeNames	0.010	0.001	0.010
highFilter-methods	0.014	0.001	0.014
hist-methods	0.030	0.001	0.033
image-methods	0.001	0.000	0.002
import.data	0.173	0.008	0.185
import.exon.scheme	0.002	0.000	0.003
import.expr.scheme	0.002	0.001	0.002
import.genome.scheme	0.002	0.000	0.001
indexUnits-methods	0.764	0.202	0.968
ini.call	0.303	0.009	0.314
intensity-methods	0.001	0.000	0.001
intensity2GCplot-methods	0.320	0.070	0.392
isROOTFile	0.001	0.000	0.001
lowFilter-methods	0.011	0.001	0.012
madFilter-methods	0.007	0.000	0.007
mas4	0.312	0.007	0.324
mas5	0.357	0.009	0.372
mas5.call	0.163	0.005	0.169
mboxplot-methods	0.426	0.080	0.516
metaProbesets	0.001	0.000	0.001
namePart	0.001	0.000	0.001
normalize	0.693	0.011	0.710
nuseplot-methods	0.028	0.002	0.029
plotImage	0.001	0.000	0.001
pm-methods	0.473	0.081	0.564
pmplot-methods	0.439	0.069	0.510
prefilter	0.001	0.000	0.001
presCall-methods	0.001	0.000	0.002
probeContentGC-methods	0.331	0.076	0.410
probeSequence-methods	0.209	0.033	0.242
probesetID2unitID-methods	0.122	0.005	0.128
probesetplot-methods	0.419	0.052	0.474
qualify	0.001	0.000	0.002
quantileFilter-methods	0.010	0.000	0.011
ratioFilter-methods	0.011	0.000	0.011
rawCELName-methods	0.017	0.001	0.018
rleplot-methods	0.035	0.003	0.037
rma	0.744	0.014	0.763
root.call	0.117	0.006	0.124
root.data	0.118	0.004	0.124
root.density	0.001	0.000	0.000
root.expr	0.624	0.013	0.641
root.graph1D	0.001	0.000	0.001
root.graph2D	0.001	0.000	0.001
root.hist1D	0.000	0.000	0.001
root.hist2D	0	0	0
root.hist3D	0.001	0.000	0.000
root.image	0.001	0.000	0.000
root.merge.data	0.108	0.003	0.113
root.mvaplot	0.001	0.000	0.001
root.profile	0.001	0.000	0.001
root.scheme	0.015	0.000	0.016
summarize	0.608	0.010	0.625
symbol2unitID-methods	0.145	0.010	0.155
treeInfo-methods	0.042	0.003	0.044
trma	0.553	0.008	0.566
type2Exten	0.001	0.000	0.000
uniTest-methods	0.009	0.000	0.010
unifilter	0.000	0.000	0.001
unitestFilter-methods	0.010	0.001	0.010
validTreetype	0.001	0.000	0.001
varFilter-methods	0.015	0.001	0.016
xpsQAReport	0.001	0.000	0.001