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BioC 3.2: BUILD BIN report for specL on oaxaca

This page was generated on 2016-04-23 10:28:35 -0700 (Sat, 23 Apr 2016).

Package 1001/1103HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
specL 1.4.0
Christian Panse , Witold E. Wolski
Snapshot Date: 2016-04-22 16:20:12 -0700 (Fri, 22 Apr 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/specL
Last Changed Rev: 109589 / Revision: 116712
Last Changed Date: 2015-10-13 12:36:05 -0700 (Tue, 13 Oct 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  WARNINGS UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  NotNeeded  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  WARNINGS [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: specL
Version: 1.4.0
Command: rm -rf specL.buildbin-libdir && mkdir specL.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh specL_1.4.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R specL.buildbin-libdir
StartedAt: 2016-04-23 06:07:10 -0700 (Sat, 23 Apr 2016)
EndedAt: 2016-04-23 06:07:19 -0700 (Sat, 23 Apr 2016)
EllapsedTime: 8.3 seconds
RetCode: 0
Status:  OK 
PackageFile: specL_1.4.0.tgz
PackageFileSize: 488.5 KiB

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf specL.buildbin-libdir && mkdir specL.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh specL_1.4.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R specL.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=specL.buildbin-libdir specL_1.4.0.tar.gz'
>>>>>>> 

* installing *source* package ‘specL’ ...
** libs
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include"   -fPIC  -Wall -mtune=core2 -g -O2  -c lower_bound.cpp -o lower_bound.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o specL.so lower_bound.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.2-bioc/meat/specL.buildbin-libdir/specL/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
Creating a generic function for ‘plot’ from package ‘graphics’ in package ‘specL’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (specL)


>>>>>>> 
>>>>>>> FIXING LINKS FOR specL.buildbin-libdir/specL/libs//specL.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libgcc_s.1.dylib" "specL.buildbin-libdir/specL/libs//specL.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libgfortran.3.dylib" "specL.buildbin-libdir/specL/libs//specL.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libreadline.5.2.dylib" "specL.buildbin-libdir/specL/libs//specL.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libreadline.dylib" "specL.buildbin-libdir/specL/libs//specL.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libquadmath.0.dylib" "specL.buildbin-libdir/specL/libs//specL.so"