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BioC 3.2: INSTALL report for simpleaffy on moscato1

This page was generated on 2016-04-23 10:15:20 -0700 (Sat, 23 Apr 2016).

Package 979/1103HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
simpleaffy 2.46.0
Crispin Miller
Snapshot Date: 2016-04-22 16:20:12 -0700 (Fri, 22 Apr 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/simpleaffy
Last Changed Rev: 109589 / Revision: 116712
Last Changed Date: 2015-10-13 12:36:05 -0700 (Tue, 13 Oct 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: simpleaffy
Version: 2.46.0
Command: rm -rf simpleaffy.buildbin-libdir && mkdir simpleaffy.buildbin-libdir && C:\cygwin\bin\curl.exe -O http://zin1/BBS/3.2/bioc/src/contrib/simpleaffy_2.46.0.tar.gz && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --library=simpleaffy.buildbin-libdir --merge-multiarch simpleaffy_2.46.0.tar.gz && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL simpleaffy_2.46.0.zip && rm simpleaffy_2.46.0.tar.gz simpleaffy_2.46.0.zip
StartedAt: 2016-04-22 18:14:34 -0700 (Fri, 22 Apr 2016)
EndedAt: 2016-04-22 18:16:47 -0700 (Fri, 22 Apr 2016)
EllapsedTime: 132.8 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   rm -rf simpleaffy.buildbin-libdir && mkdir simpleaffy.buildbin-libdir  && C:\cygwin\bin\curl.exe -O http://zin1/BBS/3.2/bioc/src/contrib/simpleaffy_2.46.0.tar.gz && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --library=simpleaffy.buildbin-libdir --merge-multiarch simpleaffy_2.46.0.tar.gz && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL simpleaffy_2.46.0.zip  && rm simpleaffy_2.46.0.tar.gz simpleaffy_2.46.0.zip
###
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##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  446k  100  446k    0     0  14.7M      0 --:--:-- --:--:-- --:--:-- 16.7M

install for i386

* installing *source* package 'simpleaffy' ...
** libs
gcc -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG     -I"d:/RCompile/r-compiling/local/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c simpleaffy.c -o simpleaffy.o
simpleaffy.c: In function 'bgmas':
simpleaffy.c:440:5: warning: passing argument 1 of 'REprintf' from incompatible pointer type [enabled by default]
D:/biocbld/BBS-3˜1.2-B/R/include/R_ext/Print.h:40:6: note: expected 'const char *' but argument is of type 'struct FILE *'
gcc -m32 -shared -s -static-libgcc -o simpleaffy.dll tmp.def simpleaffy.o -Ld:/RCompile/r-compiling/local/local323/lib/i386 -Ld:/RCompile/r-compiling/local/local323/lib -LD:/biocbld/BBS-3˜1.2-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-3.2-bioc/meat/simpleaffy.buildbin-libdir/simpleaffy/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'simpleaffy' ...
** libs
gcc -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG     -I"d:/RCompile/r-compiling/local/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c simpleaffy.c -o simpleaffy.o
simpleaffy.c: In function 'bgmas':
simpleaffy.c:440:5: warning: passing argument 1 of 'REprintf' from incompatible pointer type [enabled by default]
D:/biocbld/BBS-3˜1.2-B/R/include/R_ext/Print.h:40:6: note: expected 'const char *' but argument is of type 'struct FILE *'
gcc -m64 -shared -s -static-libgcc -o simpleaffy.dll tmp.def simpleaffy.o -Ld:/RCompile/r-compiling/local/local323/lib/x64 -Ld:/RCompile/r-compiling/local/local323/lib -LD:/biocbld/BBS-3˜1.2-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-3.2-bioc/meat/simpleaffy.buildbin-libdir/simpleaffy/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'simpleaffy' as simpleaffy_2.46.0.zip
* DONE (simpleaffy)
* installing to library 'D:/biocbld/bbs-3.2-bioc/R/library'
package 'simpleaffy' successfully unpacked and MD5 sums checked