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BioC 3.2: CHECK report for seqplots on moscato1

This page was generated on 2016-04-23 10:20:44 -0700 (Sat, 23 Apr 2016).

Package 961/1103HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
seqplots 1.8.1
Przemyslaw Stempor
Snapshot Date: 2016-04-22 16:20:12 -0700 (Fri, 22 Apr 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/seqplots
Last Changed Rev: 115781 / Revision: 116712
Last Changed Date: 2016-04-04 14:22:47 -0700 (Mon, 04 Apr 2016)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: seqplots
Version: 1.8.1
Command: rm -rf seqplots.buildbin-libdir seqplots.Rcheck && mkdir seqplots.buildbin-libdir seqplots.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=seqplots.buildbin-libdir seqplots_1.8.1.tar.gz >seqplots.Rcheck\00install.out 2>&1 && cp seqplots.Rcheck\00install.out seqplots-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=seqplots.buildbin-libdir --install="check:seqplots-install.out" --force-multiarch --no-vignettes --timings seqplots_1.8.1.tar.gz
StartedAt: 2016-04-23 07:25:07 -0700 (Sat, 23 Apr 2016)
EndedAt: 2016-04-23 07:33:41 -0700 (Sat, 23 Apr 2016)
EllapsedTime: 514.0 seconds
RetCode: 0
Status:  OK  
CheckDir: seqplots.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf seqplots.buildbin-libdir seqplots.Rcheck && mkdir seqplots.buildbin-libdir seqplots.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=seqplots.buildbin-libdir seqplots_1.8.1.tar.gz >seqplots.Rcheck\00install.out 2>&1 && cp seqplots.Rcheck\00install.out seqplots-install.out  && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=seqplots.buildbin-libdir --install="check:seqplots-install.out" --force-multiarch --no-vignettes --timings seqplots_1.8.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbld/bbs-3.2-bioc/meat/seqplots.Rcheck'
* using R version 3.2.4 (2016-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'seqplots/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'seqplots' version '1.8.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'seqplots' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  9.8Mb
  sub-directories of 1Mb or more:
    doc        2.4Mb
    seqplots   6.7Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... NOTE
Foreign function call to a different package:
  .Call("BWGFile_summary", ..., PACKAGE = "rtracklayer")
See chapter 'System and foreign language interfaces' in the 'Writing R
Extensions' manual.
* checking R code for possible problems ... NOTE
ggHeatmapPlotWrapper: no visible binding for global variable 'Var2'
ggHeatmapPlotWrapper: no visible binding for global variable 'Var1'
ggHeatmapPlotWrapper: no visible binding for global variable 'value'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [15s] OK
** running examples for arch 'x64' ... [24s] OK
Examples with CPU or elapsed time > 5s
                user system elapsed
getPlotSetArray 5.73   0.49    6.63
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'test-all.R' [23s]
 [24s] OK
** running tests for arch 'x64' ...
  Running 'test-all.R' [35s]
 [35s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  'D:/biocbld/bbs-3.2-bioc/meat/seqplots.Rcheck/00check.log'
for details.


seqplots.Rcheck/00install.out:


install for i386

* installing *source* package 'seqplots' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'seqplots' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'seqplots' as seqplots_1.8.1.zip
* DONE (seqplots)

seqplots.Rcheck/examples_i386/seqplots-Ex.timings:

nameusersystemelapsed
MotifSetup-class000
getPlotSetArray1.330.301.64
plot1.260.031.29
plotAverage0.090.000.10
plotHeatmap0.220.000.22
run000

seqplots.Rcheck/examples_x64/seqplots-Ex.timings:

nameusersystemelapsed
MotifSetup-class0.030.000.03
getPlotSetArray5.730.496.63
plot0.970.020.98
plotAverage1.120.051.31
plotHeatmap1.230.031.26
run000