saps 2.2.0
Daniel Schmolze
| Snapshot Date: 2016-04-22 16:20:12 -0700 (Fri, 22 Apr 2016) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/saps | | Last Changed Rev: 109589 / Revision: 116712 | | Last Changed Date: 2015-10-13 12:36:05 -0700 (Tue, 13 Oct 2015) |
| zin1 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | OK | |  |
| moscato1 | Windows Server 2008 R2 Standard (64-bit) / x64 | NotNeeded | OK | [ OK ] | OK | |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | OK | OK | |
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### Running command:
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### rm -rf saps.buildbin-libdir saps.Rcheck && mkdir saps.buildbin-libdir saps.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=saps.buildbin-libdir saps_2.2.0.tar.gz >saps.Rcheck\00install.out 2>&1 && cp saps.Rcheck\00install.out saps-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=saps.buildbin-libdir --install="check:saps-install.out" --force-multiarch --no-vignettes --timings saps_2.2.0.tar.gz
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* using log directory 'D:/biocbld/bbs-3.2-bioc/meat/saps.Rcheck'
* using R version 3.2.4 (2016-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'saps/DESCRIPTION' ... OK
* this is package 'saps' version '2.2.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'saps' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [69s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
plotSapsScoreDensity 29.69 0.00 29.69
calculateQValue 13.19 0.01 13.19
** running examples for arch 'x64' ... [95s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
plotSapsScoreDensity 40.36 0 40.35
calculateQValue 18.24 0 18.23
plotRandomDensity 7.80 0 7.82
plotKM 6.51 0 6.52
saps 6.24 0 6.24
plotEnrichment 6.14 0 6.15
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
install for i386
* installing *source* package 'saps' ...
** R
** inst
** preparing package for lazy loading
Warning: replacing previous import 'BiocGenerics::union' by 'igraph::union' when loading 'piano'
Warning: replacing previous import 'BiocGenerics::normalize' by 'igraph::normalize' when loading 'piano'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: replacing previous import 'BiocGenerics::union' by 'igraph::union' when loading 'piano'
Warning: replacing previous import 'BiocGenerics::normalize' by 'igraph::normalize' when loading 'piano'
install for x64
* installing *source* package 'saps' ...
** testing if installed package can be loaded
Warning: replacing previous import 'BiocGenerics::union' by 'igraph::union' when loading 'piano'
Warning: replacing previous import 'BiocGenerics::normalize' by 'igraph::normalize' when loading 'piano'
* MD5 sums
packaged installation of 'saps' as saps_2.2.0.zip
* DONE (saps)