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BioC 3.2: CHECK report for qvalue on moscato1

This page was generated on 2016-04-23 10:15:23 -0700 (Sat, 23 Apr 2016).

Package 830/1103HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
qvalue 2.2.2
John D. Storey , Andrew J. Bass
Snapshot Date: 2016-04-22 16:20:12 -0700 (Fri, 22 Apr 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/qvalue
Last Changed Rev: 112243 / Revision: 116712
Last Changed Date: 2016-01-06 11:01:55 -0800 (Wed, 06 Jan 2016)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  OK  OK [ OK ] OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: qvalue
Version: 2.2.2
Command: rm -rf qvalue.buildbin-libdir qvalue.Rcheck && mkdir qvalue.buildbin-libdir qvalue.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=qvalue.buildbin-libdir qvalue_2.2.2.tar.gz >qvalue.Rcheck\00install.out 2>&1 && cp qvalue.Rcheck\00install.out qvalue-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=qvalue.buildbin-libdir --install="check:qvalue-install.out" --force-multiarch --no-vignettes --timings qvalue_2.2.2.tar.gz
StartedAt: 2016-04-23 06:22:53 -0700 (Sat, 23 Apr 2016)
EndedAt: 2016-04-23 06:24:03 -0700 (Sat, 23 Apr 2016)
EllapsedTime: 70.1 seconds
RetCode: 0
Status:  OK  
CheckDir: qvalue.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf qvalue.buildbin-libdir qvalue.Rcheck && mkdir qvalue.buildbin-libdir qvalue.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=qvalue.buildbin-libdir qvalue_2.2.2.tar.gz >qvalue.Rcheck\00install.out 2>&1 && cp qvalue.Rcheck\00install.out qvalue-install.out  && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=qvalue.buildbin-libdir --install="check:qvalue-install.out" --force-multiarch --no-vignettes --timings qvalue_2.2.2.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbld/bbs-3.2-bioc/meat/qvalue.Rcheck'
* using R version 3.2.4 (2016-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'qvalue/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'qvalue' version '2.2.2'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'qvalue' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [9s] OK
** running examples for arch 'x64' ... [10s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

qvalue.Rcheck/00install.out:


install for i386

* installing *source* package 'qvalue' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'qvalue' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'qvalue' as qvalue_2.2.2.zip
* DONE (qvalue)

qvalue.Rcheck/examples_i386/qvalue-Ex.timings:

nameusersystemelapsed
empPvals0.380.000.37
hedenfalk1.680.021.72
hist.qvalue0.670.010.68
lfdr0.720.020.74
pi0est1.310.011.51
plot.qvalue0.690.000.69
qvalue1.870.021.88
summary.qvalue0.090.000.10
write.qvalue0.210.000.75

qvalue.Rcheck/examples_x64/qvalue-Ex.timings:

nameusersystemelapsed
empPvals0.280.030.51
hedenfalk1.620.101.72
hist.qvalue0.820.010.82
lfdr1.010.001.02
pi0est1.720.001.71
plot.qvalue0.870.020.89
qvalue1.480.001.49
summary.qvalue0.060.000.06
write.qvalue0.130.000.70