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BioC 3.2: BUILD BIN report for pRoloc on oaxaca

This page was generated on 2016-04-23 10:26:17 -0700 (Sat, 23 Apr 2016).

Package 801/1103HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
pRoloc 1.10.3
Laurent Gatto
Snapshot Date: 2016-04-22 16:20:12 -0700 (Fri, 22 Apr 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/pRoloc
Last Changed Rev: 115613 / Revision: 116712
Last Changed Date: 2016-04-01 06:24:39 -0700 (Fri, 01 Apr 2016)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  WARNINGS [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: pRoloc
Version: 1.10.3
Command: rm -rf pRoloc.buildbin-libdir && mkdir pRoloc.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh pRoloc_1.10.3.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R pRoloc.buildbin-libdir
StartedAt: 2016-04-23 05:58:10 -0700 (Sat, 23 Apr 2016)
EndedAt: 2016-04-23 05:58:48 -0700 (Sat, 23 Apr 2016)
EllapsedTime: 37.8 seconds
RetCode: 0
Status:  OK 
PackageFile: pRoloc_1.10.3.tgz
PackageFileSize: 3.315 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf pRoloc.buildbin-libdir && mkdir pRoloc.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh pRoloc_1.10.3.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R pRoloc.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=pRoloc.buildbin-libdir pRoloc_1.10.3.tar.gz'
>>>>>>> 

* installing *source* package ‘pRoloc’ ...
** libs
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/RcppArmadillo/include"   -fPIC  -Wall -mtune=core2 -g -O2  -c pRoloc.cpp -o pRoloc.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o pRoloc.so pRoloc.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/lib/gcc/x86_64-apple-darwin13.0.0/4.8.2 -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.2-bioc/meat/pRoloc.buildbin-libdir/pRoloc/libs
** R
** data
** inst
** preparing package for lazy loading
Warning in rgl.init(initValue, onlyNULL) :
  RGL: GLX extension missing on server
Warning: 'rgl_init' failed, running with rgl.useNULL = TRUE
Warning: replacing previous import ‘ggplot2::Position’ by ‘BiocGenerics::Position’ when loading ‘pRoloc’
Warning: replacing previous import ‘ggplot2::alpha’ by ‘kernlab::alpha’ when loading ‘pRoloc’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning in rgl.init(initValue, onlyNULL) :
  RGL: GLX extension missing on server
Warning: 'rgl_init' failed, running with rgl.useNULL = TRUE
Warning: replacing previous import ‘ggplot2::Position’ by ‘BiocGenerics::Position’ when loading ‘pRoloc’
Warning: replacing previous import ‘ggplot2::alpha’ by ‘kernlab::alpha’ when loading ‘pRoloc’
* DONE (pRoloc)


>>>>>>> 
>>>>>>> FIXING LINKS FOR pRoloc.buildbin-libdir/pRoloc/libs//pRoloc.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libgcc_s.1.dylib" "pRoloc.buildbin-libdir/pRoloc/libs//pRoloc.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libgfortran.3.dylib" "pRoloc.buildbin-libdir/pRoloc/libs//pRoloc.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libreadline.5.2.dylib" "pRoloc.buildbin-libdir/pRoloc/libs//pRoloc.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libreadline.dylib" "pRoloc.buildbin-libdir/pRoloc/libs//pRoloc.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libquadmath.0.dylib" "pRoloc.buildbin-libdir/pRoloc/libs//pRoloc.so"