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BioC 3.2: INSTALL report for mzR on moscato1

This page was generated on 2016-04-23 10:18:02 -0700 (Sat, 23 Apr 2016).

Package 693/1103HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
mzR 2.4.1
Bernd Fischer , Steffen Neumann , Laurent Gatto , Qiang Kou
Snapshot Date: 2016-04-22 16:20:12 -0700 (Fri, 22 Apr 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/mzR
Last Changed Rev: 114283 / Revision: 116712
Last Changed Date: 2016-03-05 22:50:11 -0800 (Sat, 05 Mar 2016)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64 [ TIMEOUT ] OK  OK  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: mzR
Version: 2.4.1
Command: rm -rf mzR.buildbin-libdir && mkdir mzR.buildbin-libdir && C:\cygwin\bin\curl.exe -O http://zin1/BBS/3.2/bioc/src/contrib/mzR_2.4.1.tar.gz && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --library=mzR.buildbin-libdir --merge-multiarch mzR_2.4.1.tar.gz && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL mzR_2.4.1.zip && rm mzR_2.4.1.tar.gz mzR_2.4.1.zip
StartedAt: 2016-04-22 18:03:20 -0700 (Fri, 22 Apr 2016)
EndedAt: 2016-04-22 18:43:43 -0700 (Fri, 22 Apr 2016)
EllapsedTime: 2400.1 seconds
RetCode: None
Status:  TIMEOUT  

Command output

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###
### Running command:
###
###   rm -rf mzR.buildbin-libdir && mkdir mzR.buildbin-libdir  && C:\cygwin\bin\curl.exe -O http://zin1/BBS/3.2/bioc/src/contrib/mzR_2.4.1.tar.gz && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --library=mzR.buildbin-libdir --merge-multiarch mzR_2.4.1.tar.gz && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL mzR_2.4.1.zip  && rm mzR_2.4.1.tar.gz mzR_2.4.1.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 14.1M  100 14.1M    0     0  89.8M      0 --:--:-- --:--:-- --:--:-- 92.5M

install for i386

* installing *source* package 'mzR' ...
** libs
rm -f cramp.o ramp_base64.o ramp.o RcppRamp.o RcppRampModule.o rnetCDF.o RcppPwiz.o RcppPwizModule.o RcppIdent.o RcppIdentModule.o R_init_mzR.o rampR.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -D_LARGEFILE_SOURCE -I./boost_aux/ -I./boost -I. -DHAVE_PWIZ_MZML_LIB  -DWITHOUT_MZ5 -fpermissive -DWINDOWS_NATIVE     -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/zlibbioc/include" -I"d:/RCompile/r-compiling/local/local323/include" -c cramp.cpp -o cramp.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -D_LARGEFILE_SOURCE -I./boost_aux/ -I./boost -I. -DHAVE_PWIZ_MZML_LIB  -DWITHOUT_MZ5 -fpermissive -DWINDOWS_NATIVE     -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/zlibbioc/include" -I"d:/RCompile/r-compiling/local/local323/include" -c ramp_base64.cpp -o ramp_base64.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -D_LARGEFILE_SOURCE -I./boost_aux/ -I./boost -I. -DHAVE_PWIZ_MZML_LIB  -DWITHOUT_MZ5 -fpermissive -DWINDOWS_NATIVE     -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/zlibbioc/include" -I"d:/RCompile/r-compiling/local/local323/include" -c ramp.cpp -o ramp.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -D_LARGEFILE_SOURCE -I./boost_aux/ -I./boost -I. -DHAVE_PWIZ_MZML_LIB  -DWITHOUT_MZ5 -fpermissive -DWINDOWS_NATIVE     -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/zlibbioc/include" -I"d:/RCompile/r-compiling/local/local323/include" -c RcppRamp.cpp -o RcppRamp.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -D_LARGEFILE_SOURCE -I./boost_aux/ -I./boost -I. -DHAVE_PWIZ_MZML_LIB  -DWITHOUT_MZ5 -fpermissive -DWINDOWS_NATIVE     -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/zlibbioc/include" -I"d:/RCompile/r-compiling/local/local323/include" -c RcppRampModule.cpp -o RcppRampModule.o
gcc -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -D_LARGEFILE_SOURCE -I./boost_aux/ -I./boost -I. -DHAVE_PWIZ_MZML_LIB  -DWITHOUT_MZ5 -fpermissive -DWINDOWS_NATIVE     -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/zlibbioc/include" -I"d:/RCompile/r-compiling/local/local323/include"  -D_LARGEFILE_SOURCE -I./win//i386 -D_MSC_VER  -fgnu89-inline   -O3 -Wall  -std=gnu99 -mtune=core2 -c rnetCDF.c -o rnetCDF.o
cc1.exe: warning: command line option '-fpermissive' is valid for C++/ObjC++ but not for C [enabled by default]
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -D_LARGEFILE_SOURCE -I./boost_aux/ -I./boost -I. -DHAVE_PWIZ_MZML_LIB  -DWITHOUT_MZ5 -fpermissive -DWINDOWS_NATIVE     -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/zlibbioc/include" -I"d:/RCompile/r-compiling/local/local323/include" -c RcppPwiz.cpp -o RcppPwiz.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -D_LARGEFILE_SOURCE -I./boost_aux/ -I./boost -I. -DHAVE_PWIZ_MZML_LIB  -DWITHOUT_MZ5 -fpermissive -DWINDOWS_NATIVE     -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/zlibbioc/include" -I"d:/RCompile/r-compiling/local/local323/include" -c RcppPwizModule.cpp -o RcppPwizModule.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -D_LARGEFILE_SOURCE -I./boost_aux/ -I./boost -I. -DHAVE_PWIZ_MZML_LIB  -DWITHOUT_MZ5 -fpermissive -DWINDOWS_NATIVE     -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/zlibbioc/include" -I"d:/RCompile/r-compiling/local/local323/include" -c RcppIdent.cpp -o RcppIdent.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -D_LARGEFILE_SOURCE -I./boost_aux/ -I./boost -I. -DHAVE_PWIZ_MZML_LIB  -DWITHOUT_MZ5 -fpermissive -DWINDOWS_NATIVE     -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/zlibbioc/include" -I"d:/RCompile/r-compiling/local/local323/include" -c RcppIdentModule.cpp -o RcppIdentModule.o
gcc -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -D_LARGEFILE_SOURCE -I./boost_aux/ -I./boost -I. -DHAVE_PWIZ_MZML_LIB  -DWITHOUT_MZ5 -fpermissive -DWINDOWS_NATIVE     -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/zlibbioc/include" -I"d:/RCompile/r-compiling/local/local323/include"  -D_LARGEFILE_SOURCE -I./win//i386 -D_MSC_VER  -fgnu89-inline   -O3 -Wall  -std=gnu99 -mtune=core2 -c R_init_mzR.c -o R_init_mzR.o
cc1.exe: warning: command line option '-fpermissive' is valid for C++/ObjC++ but not for C [enabled by default]
g++ -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -D_LARGEFILE_SOURCE -I./boost_aux/ -I./boost -I. -DHAVE_PWIZ_MZML_LIB  -DWITHOUT_MZ5 -fpermissive -DWINDOWS_NATIVE     -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/zlibbioc/include" -I"d:/RCompile/r-compiling/local/local323/include" -c rampR.cpp -o rampR.o
g++ -m32 -shared -s -static-libgcc -o mzR.dll tmp.def cramp.o ramp_base64.o ramp.o RcppRamp.o RcppRampModule.o rnetCDF.o RcppPwiz.o RcppPwizModule.o RcppIdent.o RcppIdentModule.o R_init_mzR.o rampR.o -L./win//i386 -lws2_32 -lnetcdf -lpwiz -Ld:/RCompile/r-compiling/local/local323/lib/i386 -Ld:/RCompile/r-compiling/local/local323/lib -LD:/biocbld/BBS-3˜1.2-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-3.2-bioc/meat/mzR.buildbin-libdir/mzR/libs/i386
** R
** inst
** preparing package for lazy loading
Creating a generic function for 'close' from package 'base' in package 'mzR'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'mzR' ...
** libs
rm -f cramp.o ramp_base64.o ramp.o RcppRamp.o RcppRampModule.o rnetCDF.o RcppPwiz.o RcppPwizModule.o RcppIdent.o RcppIdentModule.o R_init_mzR.o rampR.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -D_LARGEFILE_SOURCE -I./boost_aux/ -I./boost -I. -DHAVE_PWIZ_MZML_LIB  -DWITHOUT_MZ5 -fpermissive -DWINDOWS_NATIVE     -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/zlibbioc/include" -I"d:/RCompile/r-compiling/local/local323/include" -c cramp.cpp -o cramp.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -D_LARGEFILE_SOURCE -I./boost_aux/ -I./boost -I. -DHAVE_PWIZ_MZML_LIB  -DWITHOUT_MZ5 -fpermissive -DWINDOWS_NATIVE     -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/zlibbioc/include" -I"d:/RCompile/r-compiling/local/local323/include" -c ramp_base64.cpp -o ramp_base64.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -D_LARGEFILE_SOURCE -I./boost_aux/ -I./boost -I. -DHAVE_PWIZ_MZML_LIB  -DWITHOUT_MZ5 -fpermissive -DWINDOWS_NATIVE     -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/zlibbioc/include" -I"d:/RCompile/r-compiling/local/local323/include" -c ramp.cpp -o ramp.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -D_LARGEFILE_SOURCE -I./boost_aux/ -I./boost -I. -DHAVE_PWIZ_MZML_LIB  -DWITHOUT_MZ5 -fpermissive -DWINDOWS_NATIVE     -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/zlibbioc/include" -I"d:/RCompile/r-compiling/local/local323/include" -c RcppRamp.cpp -o RcppRamp.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -D_LARGEFILE_SOURCE -I./boost_aux/ -I./boost -I. -DHAVE_PWIZ_MZML_LIB  -DWITHOUT_MZ5 -fpermissive -DWINDOWS_NATIVE     -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/zlibbioc/include" -I"d:/RCompile/r-compiling/local/local323/include" -c RcppRampModule.cpp -o RcppRampModule.o
gcc -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -D_LARGEFILE_SOURCE -I./boost_aux/ -I./boost -I. -DHAVE_PWIZ_MZML_LIB  -DWITHOUT_MZ5 -fpermissive -DWINDOWS_NATIVE     -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/zlibbioc/include" -I"d:/RCompile/r-compiling/local/local323/include"  -D_LARGEFILE_SOURCE -I./win//x64 -D_MSC_VER  -fgnu89-inline   -O2 -Wall  -std=gnu99 -mtune=core2 -c rnetCDF.c -o rnetCDF.o
cc1.exe: warning: command line option '-fpermissive' is valid for C++/ObjC++ but not for C [enabled by default]
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -D_LARGEFILE_SOURCE -I./boost_aux/ -I./boost -I. -DHAVE_PWIZ_MZML_LIB  -DWITHOUT_MZ5 -fpermissive -DWINDOWS_NATIVE     -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/zlibbioc/include" -I"d:/RCompile/r-compiling/local/local323/include" -c RcppPwiz.cpp -o RcppPwiz.o
In file included from D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include/RcppCommon.h:179:0,
                 from D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include/Rcpp.h:27,
                 from RcppPwiz.h:4,
                 from RcppPwiz.cpp:1:
D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include/Rcpp/internal/wrap.h: In function 'SEXPREC* Rcpp::internal::wrap_dispatch_unknown_iterable(const T&, Rcpp::traits::false_type) [with T = long long unsigned int, SEXP = SEXPREC*, Rcpp::traits::false_type = Rcpp::traits::integral_constant<bool, false>]':
D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include/Rcpp/internal/wrap.h:732:98:   instantiated from 'SEXPREC* Rcpp::internal::wrap_dispatch_unknown(const T&, Rcpp::traits::false_type) [with T = long long unsigned int, SEXP = SEXPREC*, Rcpp::traits::false_type = Rcpp::traits::integral_constant<bool, false>]'
D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include/Rcpp/internal/wrap.h:770:96:   instantiated from 'SEXPREC* Rcpp::internal::wrap_dispatch_eigen(const T&, Rcpp::traits::false_type) [with T = long long unsigned int, SEXP = SEXPREC*, Rcpp::traits::false_type = Rcpp::traits::integral_constant<bool, false>]'
D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include/Rcpp/internal/wrap.h:787:80:   instantiated from 'SEXPREC* Rcpp::internal::wrap_dispatch_unknown_importable(const T&, Rcpp::traits::false_type) [with T = long long unsigned int, SEXP = SEXPREC*, Rcpp::traits::false_type = Rcpp::traits::integral_constant<bool, false>]'
D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include/Rcpp/internal/wrap.h:807:99:   instantiated from 'SEXPREC* Rcpp::internal::wrap_dispatch(const T&, Rcpp::traits::wrap_type_unknown_tag) [with T = long long unsigned int, SEXP = SEXPREC*]'
D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include/Rcpp/internal/wrap_end.h:30:110:   instantiated from 'SEXPREC* Rcpp::wrap(const T&) [with T = long long unsigned int, SEXP = SEXPREC*]'
D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include/Rcpp/vector/converter.h:80:31:   instantiated from 'static SEXPREC* Rcpp::internal::generic_element_converter<RTYPE>::get(const T&) [with T = long long unsigned int, int RTYPE = 19, SEXP = SEXPREC*]'
D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include/Rcpp/vector/Vector.h:506:9:   instantiated from 'static void Rcpp::Vector<RTYPE, StoragePolicy>::replace_element__dispatch__isArgument(Rcpp::traits::false_type, Rcpp::Vector<RTYPE, StoragePolicy>::iterator, SEXP, R_xlen_t, const U&) [with U = Rcpp::traits::named_object<long long unsigned int>, int RTYPE = 19, StoragePolicy = Rcpp::PreserveStorage, Rcpp::traits::false_type = Rcpp::traits::integral_constant<bool, false>, Rcpp::Vector<RTYPE, StoragePolicy>::iterator = Rcpp::internal::Proxy_Iterator<Rcpp::internal::generic_proxy<19> >, SEXP = SEXPREC*, R_xlen_t = long long int]'
D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include/Rcpp/vector/Vector.h:499:9:   instantiated from 'static void Rcpp::Vector<RTYPE, StoragePolicy>::replace_element__dispatch(Rcpp::traits::true_type, Rcpp::Vector<RTYPE, StoragePolicy>::iterator, SEXP, R_xlen_t, const U&) [with U = Rcpp::traits::named_object<long long unsigned int>, int RTYPE = 19, StoragePolicy = Rcpp::PreserveStorage, Rcpp::traits::true_type = Rcpp::traits::integral_constant<bool, true>, Rcpp::Vector<RTYPE, StoragePolicy>::iterator = Rcpp::internal::Proxy_Iterator<Rcpp::internal::generic_proxy<19> >, SEXP = SEXPREC*, R_xlen_t = long long int]'
D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include/Rcpp/vector/Vector.h:488:9:   instantiated from 'static void Rcpp::Vector<RTYPE, StoragePolicy>::replace_element(Rcpp::Vector<RTYPE, StoragePolicy>::iterator, SEXP, R_xlen_t, const U&) [with U = Rcpp::traits::named_object<long long unsigned int>, int RTYPE = 19, StoragePolicy = Rcpp::PreserveStorage, Rcpp::Vector<RTYPE, StoragePolicy>::iterator = Rcpp::internal::Proxy_Iterator<Rcpp::internal::generic_proxy<19> >, SEXP = SEXPREC*, R_xlen_t = long long int]'
D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include/Rcpp/generated/Vector__create.h:138:2:   instantiated from 'static Rcpp::Vector<RTYPE, StoragePolicy> Rcpp::Vector<RTYPE, StoragePolicy>::create__dispatch(Rcpp::traits::true_type, const T1&, const T2&) [with T1 = Rcpp::traits::named_object<long long unsigned int>, T2 = Rcpp::traits::named_object<Rcpp::Matrix<14> >, int RTYPE = 19, StoragePolicy = Rcpp::PreserveStorage, Rcpp::Vector<RTYPE, StoragePolicy> = Rcpp::Vector<19>, Rcpp::traits::true_type = Rcpp::traits::integral_constant<bool, true>]'
D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include/Rcpp/generated/Vector__create.h:112:21:   instantiated from 'static Rcpp::Vector<RTYPE, StoragePolicy> Rcpp::Vector<RTYPE, StoragePolicy>::create(const T1&, const T2&) [with T1 = Rcpp::traits::named_object<long long unsigned int>, T2 = Rcpp::traits::named_object<Rcpp::Matrix<14> >, int RTYPE = 19, StoragePolicy = Rcpp::PreserveStorage, Rcpp::Vector<RTYPE, StoragePolicy> = Rcpp::Vector<19>]'
RcppPwiz.cpp:351:16:   instantiated from here
D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include/Rcpp/internal/wrap.h:525:11: warning: invalid conversion from 'long long unsigned int' to 'SEXP' [-fpermissive]
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -D_LARGEFILE_SOURCE -I./boost_aux/ -I./boost -I. -DHAVE_PWIZ_MZML_LIB  -DWITHOUT_MZ5 -fpermissive -DWINDOWS_NATIVE     -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/zlibbioc/include" -I"d:/RCompile/r-compiling/local/local323/include" -c RcppPwizModule.cpp -o RcppPwizModule.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -D_LARGEFILE_SOURCE -I./boost_aux/ -I./boost -I. -DHAVE_PWIZ_MZML_LIB  -DWITHOUT_MZ5 -fpermissive -DWINDOWS_NATIVE     -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/zlibbioc/include" -I"d:/RCompile/r-compiling/local/local323/include" -c RcppIdent.cpp -o RcppIdent.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -D_LARGEFILE_SOURCE -I./boost_aux/ -I./boost -I. -DHAVE_PWIZ_MZML_LIB  -DWITHOUT_MZ5 -fpermissive -DWINDOWS_NATIVE     -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/zlibbioc/include" -I"d:/RCompile/r-compiling/local/local323/include" -c RcppIdentModule.cpp -o RcppIdentModule.o
gcc -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -D_LARGEFILE_SOURCE -I./boost_aux/ -I./boost -I. -DHAVE_PWIZ_MZML_LIB  -DWITHOUT_MZ5 -fpermissive -DWINDOWS_NATIVE     -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/zlibbioc/include" -I"d:/RCompile/r-compiling/local/local323/include"  -D_LARGEFILE_SOURCE -I./win//x64 -D_MSC_VER  -fgnu89-inline   -O2 -Wall  -std=gnu99 -mtune=core2 -c R_init_mzR.c -o R_init_mzR.o
cc1.exe: warning: command line option '-fpermissive' is valid for C++/ObjC++ but not for C [enabled by default]
g++ -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG -D_LARGEFILE_SOURCE -I./boost_aux/ -I./boost -I. -DHAVE_PWIZ_MZML_LIB  -DWITHOUT_MZ5 -fpermissive -DWINDOWS_NATIVE     -I"D:/biocbld/bbs-3.2-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.2-bioc/R/library/zlibbioc/include" -I"d:/RCompile/r-compiling/local/local323/include" -c rampR.cpp -o rampR.o
g++ -m64 -shared -s -static-libgcc -o mzR.dll tmp.def cramp.o ramp_base64.o ramp.o RcppRamp.o RcppRampModule.o rnetCDF.o RcppPwiz.o RcppPwizModule.o RcppIdent.o RcppIdentModule.o R_init_mzR.o rampR.o -L./win//x64 -lws2_32 -lnetcdf -lpwiz -Ld:/RCompile/r-compiling/local/local323/lib/x64 -Ld:/RCompile/r-compiling/local/local323/lib -LD:/biocbld/BBS-3˜1.2-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-3.2-bioc/meat/mzR.buildbin-libdir/mzR/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'mzR' as mzR_2.4.1.zip
* DONE (mzR)