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BioC 3.2: BUILD report for lumi on oaxaca

This page was generated on 2016-04-23 10:23:36 -0700 (Sat, 23 Apr 2016).

Package 577/1103HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
lumi 2.22.1
Pan Du
Snapshot Date: 2016-04-22 16:20:12 -0700 (Fri, 22 Apr 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/lumi
Last Changed Rev: 112484 / Revision: 116712
Last Changed Date: 2016-01-12 13:32:17 -0800 (Tue, 12 Jan 2016)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK [ OK ] WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: lumi
Version: 2.22.1
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data lumi
StartedAt: 2016-04-22 17:49:36 -0700 (Fri, 22 Apr 2016)
EndedAt: 2016-04-22 17:51:32 -0700 (Fri, 22 Apr 2016)
EllapsedTime: 116.8 seconds
RetCode: 0
Status:  OK 
PackageFile: lumi_2.22.1.tar.gz
PackageFileSize: 8.921 MiB

Command output

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data lumi
###
##############################################################################
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* checking for file ‘lumi/DESCRIPTION’ ... OK
* preparing ‘lumi’:
* checking DESCRIPTION meta-information ... OK
Warning: bad markup (extra space?) at lumiMethyR.Rd:18:16
Warning: bad markup (extra space?) at lumiMethyR.Rd:19:28
Warning: bad markup (extra space?) at lumiMethyR.Rd:20:13
* installing the package to build vignettes
* creating vignettes ... OK
* excluding invalid files
Subdirectory 'R' contains invalid file names:
  ‘affyExpresso.R.deprecated’ ‘affyVstRma.R.deprecated’
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* looking to see if a ‘data/datalist’ file should be added
* building ‘lumi_2.22.1.tar.gz’