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BioC 3.2: BUILD report for inSilicoDb on moscato1

This page was generated on 2016-04-23 10:17:56 -0700 (Sat, 23 Apr 2016).

Package 530/1103HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
inSilicoDb 2.6.0
InSilico DB
Snapshot Date: 2016-04-22 16:20:12 -0700 (Fri, 22 Apr 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/inSilicoDb
Last Changed Rev: 109589 / Revision: 116712
Last Changed Date: 2015-10-13 12:36:05 -0700 (Tue, 13 Oct 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  ERROR  skipped 
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  OK [ ERROR ] skipped  skipped 
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  ERROR  skipped  skipped 

Summary

Package: inSilicoDb
Version: 2.6.0
Command: chmod a+r inSilicoDb -R && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data inSilicoDb
StartedAt: 2016-04-22 20:09:36 -0700 (Fri, 22 Apr 2016)
EndedAt: 2016-04-22 20:10:06 -0700 (Fri, 22 Apr 2016)
EllapsedTime: 30.4 seconds
RetCode: 1
Status:  ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r inSilicoDb -R && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data inSilicoDb
###
##############################################################################
##############################################################################


* checking for file 'inSilicoDb/DESCRIPTION' ... OK
* preparing 'inSilicoDb':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ...Warning: running command '"D:/biocbld/bbs-3.2-bioc/R/bin/x64/Rscript" --vanilla --default-packages= -e "tools::buildVignettes(dir = '.', tangle = TRUE)"' had status 1
 ERROR
Loading required package: rjson
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, as.vector, cbind, colnames, do.call, duplicated,
    eval, evalq, get, grep, grepl, intersect, is.unsorted, lapply,
    lengths, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unlist, unsplit

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: RCurl
Loading required package: bitops
  INSILICODB: Welcome RPackage Tester
  INSILICODB: The dataset you requested is available for download.
  INSILICODB: Dataset GSE4635, GPL96, CURESET, PROBE, ORIGINAL, 37769, RNA, Proteomic and Genomic Profiling of Bronchial Epithelial Cells in Never and Current Smokers, finished, GSE4635GPL96_RNA_ORIGINALPROBE_37769.RData
  INSILICODB: Requested dataset stored in local file: cache/GSE4635GPL96_RNA_ORIGINALPROBE_37769.RData
  INSILICODB: The dataset you requested is available for download.
  INSILICODB: Dataset GSE4635, GPL96, CURESET, PROBE, ORIGINAL, 37769, RNA, Proteomic and Genomic Profiling of Bronchial Epithelial Cells in Never and Current Smokers, finished, GSE4635GPL96_RNA_ORIGINALPROBE_37769.RData
  INSILICODB: Requested dataset found in local file: cache/GSE4635GPL96_RNA_ORIGINALPROBE_37769.RData

Attaching package: 'limma'

The following object is masked from 'package:BiocGenerics':

    plotMA

  INSILICODB: The dataset you requested could not be computed. We are sorry for the inconvenience.

Error: processing vignette 'inSilicoDb.Rnw' failed with diagnostics:
 chunk 4 (label = example_heatmap) 
Error : Stopped because of previous errors
Execution halted