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BioC 3.2: INSTALL report for gwascat on moscato1

This page was generated on 2016-04-23 10:18:22 -0700 (Sat, 23 Apr 2016).

Package 480/1103HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
gwascat 2.2.1
VJ Carey
Snapshot Date: 2016-04-22 16:20:12 -0700 (Fri, 22 Apr 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/gwascat
Last Changed Rev: 115772 / Revision: 116712
Last Changed Date: 2016-04-04 11:04:48 -0700 (Mon, 04 Apr 2016)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: gwascat
Version: 2.2.1
Command: rm -rf gwascat.buildbin-libdir && mkdir gwascat.buildbin-libdir && C:\cygwin\bin\curl.exe -O http://zin1/BBS/3.2/bioc/src/contrib/gwascat_2.2.1.tar.gz && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --library=gwascat.buildbin-libdir --merge-multiarch gwascat_2.2.1.tar.gz && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL gwascat_2.2.1.zip && rm gwascat_2.2.1.tar.gz gwascat_2.2.1.zip
StartedAt: 2016-04-22 18:41:33 -0700 (Fri, 22 Apr 2016)
EndedAt: 2016-04-22 18:44:58 -0700 (Fri, 22 Apr 2016)
EllapsedTime: 205.5 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf gwascat.buildbin-libdir && mkdir gwascat.buildbin-libdir  && C:\cygwin\bin\curl.exe -O http://zin1/BBS/3.2/bioc/src/contrib/gwascat_2.2.1.tar.gz && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --library=gwascat.buildbin-libdir --merge-multiarch gwascat_2.2.1.tar.gz && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL gwascat_2.2.1.zip  && rm gwascat_2.2.1.tar.gz gwascat_2.2.1.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 36.9M  100 36.9M    0     0  66.8M      0 --:--:-- --:--:-- --:--:-- 67.3M

install for i386

* installing *source* package 'gwascat' ...
** R
** data
** inst
** preparing package for lazy loading
Now getting the GODb Object directly
Now getting the OrgDb Object directly
Now getting the TxDb Object directly
Warning: replacing previous import 'ggplot2::Position' by 'BiocGenerics::Position' when loading 'ggbio'
Warning: replacing previous import 'ggplot2::Position' by 'S4Vectors::Position' when loading 'gwascat'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Now getting the GODb Object directly
Now getting the OrgDb Object directly
Now getting the TxDb Object directly
Warning: replacing previous import 'ggplot2::Position' by 'BiocGenerics::Position' when loading 'ggbio'
Warning: replacing previous import 'ggplot2::Position' by 'S4Vectors::Position' when loading 'gwascat'

install for x64

* installing *source* package 'gwascat' ...
** testing if installed package can be loaded
Now getting the GODb Object directly
Now getting the OrgDb Object directly
Now getting the TxDb Object directly
Warning: replacing previous import 'ggplot2::Position' by 'BiocGenerics::Position' when loading 'ggbio'
Warning: replacing previous import 'ggplot2::Position' by 'S4Vectors::Position' when loading 'gwascat'
* MD5 sums
packaged installation of 'gwascat' as gwascat_2.2.1.zip
* DONE (gwascat)
* installing to library 'D:/biocbld/bbs-3.2-bioc/R/library'
package 'gwascat' successfully unpacked and MD5 sums checked