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BioC 3.2: CHECK report for frma on moscato1

This page was generated on 2016-04-23 10:17:06 -0700 (Sat, 23 Apr 2016).

Package 380/1103HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
frma 1.22.0
Matthew N. McCall
Snapshot Date: 2016-04-22 16:20:12 -0700 (Fri, 22 Apr 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/frma
Last Changed Rev: 109589 / Revision: 116712
Last Changed Date: 2015-10-13 12:36:05 -0700 (Tue, 13 Oct 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  OK  OK [ OK ] OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: frma
Version: 1.22.0
Command: rm -rf frma.buildbin-libdir frma.Rcheck && mkdir frma.buildbin-libdir frma.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=frma.buildbin-libdir frma_1.22.0.tar.gz >frma.Rcheck\00install.out 2>&1 && cp frma.Rcheck\00install.out frma-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=frma.buildbin-libdir --install="check:frma-install.out" --force-multiarch --no-vignettes --timings frma_1.22.0.tar.gz
StartedAt: 2016-04-23 02:27:24 -0700 (Sat, 23 Apr 2016)
EndedAt: 2016-04-23 02:35:01 -0700 (Sat, 23 Apr 2016)
EllapsedTime: 456.7 seconds
RetCode: 0
Status:  OK  
CheckDir: frma.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf frma.buildbin-libdir frma.Rcheck && mkdir frma.buildbin-libdir frma.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=frma.buildbin-libdir frma_1.22.0.tar.gz >frma.Rcheck\00install.out 2>&1 && cp frma.Rcheck\00install.out frma-install.out  && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=frma.buildbin-libdir --install="check:frma-install.out" --force-multiarch --no-vignettes --timings frma_1.22.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbld/bbs-3.2-bioc/meat/frma.Rcheck'
* using R version 3.2.4 (2016-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'frma/DESCRIPTION' ... OK
* this is package 'frma' version '1.22.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'frma' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Package listed in more than one of Depends, Imports, Suggests, Enhances:
  'Biobase'
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [120s] OK
Examples with CPU or elapsed time > 5s
         user system elapsed
GNUSE   40.40   0.22   44.74
frma    36.72   0.07   36.79
barcode 28.44   0.09   30.33
** running examples for arch 'x64' ... [125s] OK
Examples with CPU or elapsed time > 5s
         user system elapsed
GNUSE   41.70   0.29   42.18
frma    37.86   0.07   37.92
barcode 35.34   0.10   35.44
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'D:/biocbld/bbs-3.2-bioc/meat/frma.Rcheck/00check.log'
for details.


frma.Rcheck/00install.out:


install for i386

* installing *source* package 'frma' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'frma' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'frma' as frma_1.22.0.zip
* DONE (frma)

frma.Rcheck/examples_i386/frma-Ex.timings:

nameusersystemelapsed
GNUSE40.40 0.2244.74
barcode28.44 0.0930.33
frma36.72 0.0736.79
frmaExpressionSet-class0.20.00.2

frma.Rcheck/examples_x64/frma-Ex.timings:

nameusersystemelapsed
GNUSE41.70 0.2942.18
barcode35.34 0.1035.44
frma37.86 0.0737.92
frmaExpressionSet-class0.190.000.19