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BioC 3.2: BUILD BIN report for flowFP on oaxaca

This page was generated on 2016-04-23 10:24:24 -0700 (Sat, 23 Apr 2016).

Package 358/1103HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
flowFP 1.28.0
Herb Holyst
Snapshot Date: 2016-04-22 16:20:12 -0700 (Fri, 22 Apr 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/flowFP
Last Changed Rev: 115514 / Revision: 116712
Last Changed Date: 2016-03-31 06:51:46 -0700 (Thu, 31 Mar 2016)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: flowFP
Version: 1.28.0
Command: rm -rf flowFP.buildbin-libdir && mkdir flowFP.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh flowFP_1.28.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R flowFP.buildbin-libdir
StartedAt: 2016-04-23 05:41:08 -0700 (Sat, 23 Apr 2016)
EndedAt: 2016-04-23 05:41:19 -0700 (Sat, 23 Apr 2016)
EllapsedTime: 11.0 seconds
RetCode: 0
Status:  OK 
PackageFile: flowFP_1.28.0.tgz
PackageFileSize: 5.022 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf flowFP.buildbin-libdir && mkdir flowFP.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh flowFP_1.28.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R flowFP.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=flowFP.buildbin-libdir flowFP_1.28.0.tar.gz'
>>>>>>> 

* installing *source* package ‘flowFP’ ...
configure: creating ./config.status
config.status: creating src/Makevars
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c flowFP.c -o flowFP.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c init.c -o init.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c split_utils.c -o split_utils.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o flowFP.so flowFP.o init.o split_utils.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.2-bioc/meat/flowFP.buildbin-libdir/flowFP/libs
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for ‘append’ from package ‘base’ in package ‘flowFP’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (flowFP)


>>>>>>> 
>>>>>>> FIXING LINKS FOR flowFP.buildbin-libdir/flowFP/libs//flowFP.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libgcc_s.1.dylib" "flowFP.buildbin-libdir/flowFP/libs//flowFP.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libgfortran.3.dylib" "flowFP.buildbin-libdir/flowFP/libs//flowFP.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libreadline.5.2.dylib" "flowFP.buildbin-libdir/flowFP/libs//flowFP.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libreadline.dylib" "flowFP.buildbin-libdir/flowFP/libs//flowFP.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libquadmath.0.dylib" "flowFP.buildbin-libdir/flowFP/libs//flowFP.so"