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BioC 3.2: CHECK report for derfinderPlot on oaxaca

This page was generated on 2016-04-23 10:28:20 -0700 (Sat, 23 Apr 2016).

Package 267/1103HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
derfinderPlot 1.4.1
Leonardo Collado-Torres
Snapshot Date: 2016-04-22 16:20:12 -0700 (Fri, 22 Apr 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/derfinderPlot
Last Changed Rev: 110290 / Revision: 116712
Last Changed Date: 2015-11-03 18:37:16 -0800 (Tue, 03 Nov 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK [ OK ] OK UNNEEDED, same version exists in internal repository

Summary

Package: derfinderPlot
Version: 1.4.1
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings derfinderPlot_1.4.1.tar.gz
StartedAt: 2016-04-22 23:29:56 -0700 (Fri, 22 Apr 2016)
EndedAt: 2016-04-22 23:38:41 -0700 (Fri, 22 Apr 2016)
EllapsedTime: 524.3 seconds
RetCode: 0
Status:  OK 
CheckDir: derfinderPlot.Rcheck
Warnings: 0

Command output

##############################################################################
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### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings derfinderPlot_1.4.1.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.2-bioc/meat/derfinderPlot.Rcheck’
* using R version 3.2.4 (2016-03-10)
* using platform: x86_64-apple-darwin13.4.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘derfinderPlot/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘derfinderPlot’ version ‘1.4.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘derfinderPlot’ can be installed ... [34s/34s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [111s/112s] OK
Examples with CPU or elapsed time > 5s
                     user system elapsed
plotCluster        52.901  1.189   54.25
plotRegionCoverage 36.681  0.734   37.47
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘test-all.R’ [102s/106s]
 [102s/107s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

derfinderPlot.Rcheck/00install.out:

* installing *source* package ‘derfinderPlot’ ...
** R
** inst
** preparing package for lazy loading
Warning: replacing previous import ‘ggplot2::Position’ by ‘BiocGenerics::Position’ when loading ‘ggbio’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: replacing previous import ‘ggplot2::Position’ by ‘BiocGenerics::Position’ when loading ‘ggbio’
* DONE (derfinderPlot)

derfinderPlot.Rcheck/derfinderPlot-Ex.timings:

nameusersystemelapsed
plotCluster52.901 1.18954.250
plotOverview2.8340.0122.849
plotRegionCoverage36.681 0.73437.470
vennRegions0.4950.0160.527