VariantAnnotation 1.16.4
Valerie Obenchain
| Snapshot Date: 2016-04-22 16:20:12 -0700 (Fri, 22 Apr 2016) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/VariantAnnotation | | Last Changed Rev: 111292 / Revision: 116712 | | Last Changed Date: 2015-12-07 18:10:18 -0800 (Mon, 07 Dec 2015) |
| zin1 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | OK | OK | OK | |  |
| moscato1 | Windows Server 2008 R2 Standard (64-bit) / x64 | OK | OK | OK | [ OK ] | |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | OK | OK | |
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### Running command:
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### cd VariantAnnotation.buildbin-libdir/VariantAnnotation && zip -r ../../VariantAnnotation_1.16.4.zip . & cd ../..
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adding: CITATION (188 bytes security) (deflated 57%)
adding: DESCRIPTION (188 bytes security) (deflated 50%)
adding: doc/ (208 bytes security) (stored 0%)
adding: doc/filterVcf.pdf (188 bytes security) (deflated 10%)
adding: doc/filterVcf.R (188 bytes security) (deflated 68%)
adding: doc/filterVcf.Rnw (188 bytes security) (deflated 60%)
adding: doc/index.html (188 bytes security) (deflated 69%)
adding: doc/VariantAnnotation.pdf (188 bytes security) (deflated 17%)
adding: doc/VariantAnnotation.R (188 bytes security) (deflated 77%)
adding: doc/VariantAnnotation.Rnw (188 bytes security) (deflated 62%)
adding: extdata/ (208 bytes security) (stored 0%)
adding: extdata/chr22.vcf.gz (188 bytes security) (deflated 0%)
adding: extdata/chr22.vcf.gz.tbi (188 bytes security) (deflated 3%)
adding: extdata/chr7-sub.vcf.gz (188 bytes security) (deflated 0%)
adding: extdata/chr7-sub.vcf.gz.tbi (188 bytes security) (deflated 5%)
adding: extdata/ex2.vcf (188 bytes security) (deflated 53%)
adding: extdata/gl_chr1.vcf (188 bytes security) (deflated 80%)
adding: extdata/h1187-10k.vcf.gz (188 bytes security) (deflated 0%)
adding: extdata/h1187-10k.vcf.gz.tbi (188 bytes security) (stored 0%)
adding: extdata/structural.vcf (188 bytes security) (deflated 63%)
adding: help/ (208 bytes security) (stored 0%)
adding: help/aliases.rds (188 bytes security) (stored 0%)
adding: help/AnIndex (188 bytes security) (deflated 86%)
adding: help/paths.rds (188 bytes security) (stored 0%)
adding: help/VariantAnnotation.rdb (188 bytes security) (deflated 1%)
adding: help/VariantAnnotation.rdx (188 bytes security) (stored 0%)
adding: html/ (208 bytes security) (stored 0%)
adding: html/00Index.html (188 bytes security) (deflated 91%)
adding: html/R.css (188 bytes security) (deflated 75%)
adding: INDEX (188 bytes security) (deflated 65%)
adding: libs/ (208 bytes security) (stored 0%)
adding: libs/i386/ (208 bytes security) (stored 0%)
adding: libs/i386/VariantAnnotation.dll (188 bytes security) (deflated 55%)
adding: libs/x64/ (208 bytes security) (stored 0%)
adding: libs/x64/VariantAnnotation.dll (188 bytes security) (deflated 55%)
adding: MD5 (188 bytes security) (deflated 49%)
adding: Meta/ (208 bytes security) (stored 0%)
adding: Meta/hsearch.rds (188 bytes security) (stored 0%)
adding: Meta/links.rds (188 bytes security) (stored 0%)
adding: Meta/nsInfo.rds (188 bytes security) (stored 0%)
adding: Meta/package.rds (188 bytes security) (stored 0%)
adding: Meta/Rd.rds (188 bytes security) (stored 0%)
adding: Meta/vignette.rds (188 bytes security) (stored 0%)
adding: NAMESPACE (188 bytes security) (deflated 63%)
adding: NEWS (188 bytes security) (deflated 65%)
adding: R/ (208 bytes security) (stored 0%)
adding: R/VariantAnnotation (188 bytes security) (deflated 41%)
adding: R/VariantAnnotation.rdb (188 bytes security) (deflated 34%)
adding: R/VariantAnnotation.rdx (188 bytes security) (deflated 4%)
adding: scripts/ (208 bytes security) (stored 0%)
adding: scripts/test_Rplinkseq.R (188 bytes security) (deflated 68%)
adding: unitTests/ (208 bytes security) (stored 0%)
adding: unitTests/cases/ (208 bytes security) (stored 0%)
adding: unitTests/cases/banded_gvcf.vcf (188 bytes security) (deflated 63%)
adding: unitTests/cases/expand.vcf (188 bytes security) (deflated 68%)
adding: unitTests/cases/fewer-FORMAT-than-GENO.vcf (188 bytes security) (deflated 45%)
adding: unitTests/cases/FORMAT_header_no_SAMPLEs.vcf (188 bytes security) (deflated 47%)
adding: unitTests/cases/missing-FORMAT-metadata-elt.vcf (188 bytes security) (deflated 42%)
adding: unitTests/cases/mixedStructural.vcf (188 bytes security) (deflated 63%)
adding: unitTests/cases/multiple_INFO_fields.vcf (188 bytes security) (deflated 30%)
adding: unitTests/cases/negative_FORMAT_Number.vcf (188 bytes security) (deflated 64%)
adding: unitTests/cases/no_FORMAT_column.vcf (188 bytes security) (deflated 31%)
adding: unitTests/cases/no_GENO_row.vcf (188 bytes security) (deflated 43%)
adding: unitTests/cases/no_INFO_header.vcf (188 bytes security) (deflated 36%)
adding: unitTests/cases/unspecified_INFO_FORMAT_fields.vcf (188 bytes security) (deflated 51%)
adding: unitTests/cases/VarScan_header.vcf (188 bytes security) (deflated 58%)
adding: unitTests/test_expand-methods.R (188 bytes security) (deflated 70%)
adding: unitTests/test_filterVcf.R (188 bytes security) (deflated 78%)
adding: unitTests/test_genotypeToSnpMatrix.R (188 bytes security) (deflated 78%)
adding: unitTests/test_isSNV.R (188 bytes security) (deflated 78%)
adding: unitTests/test_locateVariants-methods.R (188 bytes security) (deflated 73%)
adding: unitTests/test_predictCoding-methods.R (188 bytes security) (deflated 77%)
adding: unitTests/test_readVcf-methods.R (188 bytes security) (deflated 75%)
adding: unitTests/test_scanVcf.R (188 bytes security) (deflated 68%)
adding: unitTests/test_ScanVcfParam-class.R (188 bytes security) (deflated 73%)
adding: unitTests/test_SIFTandPolyPhen.R (188 bytes security) (deflated 66%)
adding: unitTests/test_snpSummary.R (188 bytes security) (deflated 66%)
adding: unitTests/test_summarizeVariants-methods.R (188 bytes security) (deflated 49%)
adding: unitTests/test_VCF-class.R (188 bytes security) (deflated 78%)
adding: unitTests/test_VRanges-class.R (188 bytes security) (deflated 76%)
adding: unitTests/test_writeVcf-methods.R (188 bytes security) (deflated 79%)