BioC 3.2: CHECK report for UniProt.ws on moscato1

Package: UniProt.ws

Version: 2.10.4

Command: rm -rf UniProt.ws.buildbin-libdir UniProt.ws.Rcheck && mkdir UniProt.ws.buildbin-libdir UniProt.ws.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=UniProt.ws.buildbin-libdir UniProt.ws_2.10.4.tar.gz >UniProt.ws.Rcheck\00install.out 2>&1 && cp UniProt.ws.Rcheck\00install.out UniProt.ws-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=UniProt.ws.buildbin-libdir --install="check:UniProt.ws-install.out" --force-multiarch --no-vignettes --timings UniProt.ws_2.10.4.tar.gz

StartedAt: 2016-04-23 08:27:26 -0700 (Sat, 23 Apr 2016)

EndedAt: 2016-04-23 08:38:23 -0700 (Sat, 23 Apr 2016)

EllapsedTime: 657.1 seconds

RetCode: 0

Status:  OK

CheckDir: UniProt.ws.Rcheck

Warnings: 0

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf UniProt.ws.buildbin-libdir UniProt.ws.Rcheck && mkdir UniProt.ws.buildbin-libdir UniProt.ws.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=UniProt.ws.buildbin-libdir UniProt.ws_2.10.4.tar.gz >UniProt.ws.Rcheck\00install.out 2>&1 && cp UniProt.ws.Rcheck\00install.out UniProt.ws-install.out  && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=UniProt.ws.buildbin-libdir --install="check:UniProt.ws-install.out" --force-multiarch --no-vignettes --timings UniProt.ws_2.10.4.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbld/bbs-3.2-bioc/meat/UniProt.ws.Rcheck'
* using R version 3.2.4 (2016-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'UniProt.ws/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'UniProt.ws' version '2.10.4'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'UniProt.ws' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Unexported object imported by a ':::' call: 'AnnotationDbi:::.resort'
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [79s] OK
Examples with CPU or elapsed time > 5s
                 user system elapsed
UniProtWS-class 11.25   2.25   46.99
colsAndKeytypes  7.41   1.98   26.97
** running examples for arch 'x64' ... [76s] OK
Examples with CPU or elapsed time > 5s
                user system elapsed
UniProtWS-class 8.75   3.85   43.45
colsAndKeytypes 4.50   3.50   26.69
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'UniProt.ws_unit_tests.R' [167s]
 [168s] OK
** running tests for arch 'x64' ...
  Running 'UniProt.ws_unit_tests.R' [201s]
 [201s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'D:/biocbld/bbs-3.2-bioc/meat/UniProt.ws.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'UniProt.ws' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'UniProt.ws' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'UniProt.ws' as UniProt.ws_2.10.4.zip
* DONE (UniProt.ws)

name	user	system	elapsed
UniProtWS-class	11.25	2.25	46.99
colsAndKeytypes	7.41	1.98	26.97

name	user	system	elapsed
UniProtWS-class	8.75	3.85	43.45
colsAndKeytypes	4.50	3.50	26.69