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BioC 3.2: BUILD BIN report for TFBSTools on oaxaca

This page was generated on 2016-04-23 10:27:15 -0700 (Sat, 23 Apr 2016).

Package 1050/1103HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
TFBSTools 1.8.3
Ge Tan
Snapshot Date: 2016-04-22 16:20:12 -0700 (Fri, 22 Apr 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/TFBSTools
Last Changed Rev: 116154 / Revision: 116712
Last Changed Date: 2016-04-11 10:15:00 -0700 (Mon, 11 Apr 2016)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: TFBSTools
Version: 1.8.3
Command: rm -rf TFBSTools.buildbin-libdir && mkdir TFBSTools.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh TFBSTools_1.8.3.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R TFBSTools.buildbin-libdir
StartedAt: 2016-04-23 06:08:33 -0700 (Sat, 23 Apr 2016)
EndedAt: 2016-04-23 06:08:54 -0700 (Sat, 23 Apr 2016)
EllapsedTime: 21.8 seconds
RetCode: 0
Status:  OK 
PackageFile: TFBSTools_1.8.3.tgz
PackageFileSize: 1.664 MiB

Command output

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##############################################################################
###
### Running command:
###
###   rm -rf TFBSTools.buildbin-libdir && mkdir TFBSTools.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh TFBSTools_1.8.3.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R TFBSTools.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=TFBSTools.buildbin-libdir TFBSTools_1.8.3.tar.gz'
>>>>>>> 

* installing *source* package ‘TFBSTools’ ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c matrixAlignerDynamic.c -o matrixAlignerDynamic.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c R_init_TFBSTools.c -o R_init_TFBSTools.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o TFBSTools.so matrixAlignerDynamic.o R_init_TFBSTools.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.2-bioc/meat/TFBSTools.buildbin-libdir/TFBSTools/libs
** R
** data
** inst
** preparing package for lazy loading
Creating a new generic function for ‘seqLogo’ in package ‘TFBSTools’
Creating a generic function for ‘colSums’ from package ‘base’ in package ‘TFBSTools’
Creating a generic function for ‘rowSums’ from package ‘base’ in package ‘TFBSTools’
Creating a generic function for ‘update’ from package ‘stats’ in package ‘TFBSTools’
Creating a generic function for ‘as.matrix’ from package ‘base’ in package ‘TFBSTools’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (TFBSTools)


>>>>>>> 
>>>>>>> FIXING LINKS FOR TFBSTools.buildbin-libdir/TFBSTools/libs//TFBSTools.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libgcc_s.1.dylib" "TFBSTools.buildbin-libdir/TFBSTools/libs//TFBSTools.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libgfortran.3.dylib" "TFBSTools.buildbin-libdir/TFBSTools/libs//TFBSTools.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libreadline.5.2.dylib" "TFBSTools.buildbin-libdir/TFBSTools/libs//TFBSTools.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libreadline.dylib" "TFBSTools.buildbin-libdir/TFBSTools/libs//TFBSTools.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libquadmath.0.dylib" "TFBSTools.buildbin-libdir/TFBSTools/libs//TFBSTools.so"