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BioC 3.2: CHECK report for RTN on moscato1

This page was generated on 2016-04-23 10:19:33 -0700 (Sat, 23 Apr 2016).

Package 925/1103HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RTN 1.8.4
Mauro Castro
Snapshot Date: 2016-04-22 16:20:12 -0700 (Fri, 22 Apr 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/RTN
Last Changed Rev: 114685 / Revision: 116712
Last Changed Date: 2016-03-12 19:52:07 -0800 (Sat, 12 Mar 2016)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: RTN
Version: 1.8.4
Command: rm -rf RTN.buildbin-libdir RTN.Rcheck && mkdir RTN.buildbin-libdir RTN.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=RTN.buildbin-libdir RTN_1.8.4.tar.gz >RTN.Rcheck\00install.out 2>&1 && cp RTN.Rcheck\00install.out RTN-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=RTN.buildbin-libdir --install="check:RTN-install.out" --force-multiarch --no-vignettes --timings RTN_1.8.4.tar.gz
StartedAt: 2016-04-23 07:09:39 -0700 (Sat, 23 Apr 2016)
EndedAt: 2016-04-23 07:14:49 -0700 (Sat, 23 Apr 2016)
EllapsedTime: 310.6 seconds
RetCode: 0
Status:  OK  
CheckDir: RTN.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf RTN.buildbin-libdir RTN.Rcheck && mkdir RTN.buildbin-libdir RTN.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=RTN.buildbin-libdir RTN_1.8.4.tar.gz >RTN.Rcheck\00install.out 2>&1 && cp RTN.Rcheck\00install.out RTN-install.out  && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=RTN.buildbin-libdir --install="check:RTN-install.out" --force-multiarch --no-vignettes --timings RTN_1.8.4.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbld/bbs-3.2-bioc/meat/RTN.Rcheck'
* using R version 3.2.4 (2016-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'RTN/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'RTN' version '1.8.4'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'RTN' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [20s] OK
** running examples for arch 'x64' ... [20s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'runTests.R' [7s]
 [7s] OK
** running tests for arch 'x64' ...
  Running 'runTests.R' [8s]
 [8s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

RTN.Rcheck/00install.out:


install for i386

* installing *source* package 'RTN' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'RTN' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'RTN' as RTN_1.8.4.zip
* DONE (RTN)

RTN.Rcheck/examples_i386/RTN-Ex.timings:

nameusersystemelapsed
AVS-class000
RTN.data0.550.000.55
TNA-class000
TNI-class0.480.000.58
avs.evse000
avs.get000
avs.plot10.010.000.01
avs.plot2000
avs.preprocess000
avs.vse000
tna.get0.520.000.52
tna.graph0.720.010.73
tna.gsea10.730.000.73
tna.gsea20.580.000.57
tna.mra0.870.000.88
tna.overlap0.870.020.89
tna.plot.gsea10.490.010.50
tna.plot.gsea20.610.030.64
tna.shadow0.510.000.51
tna.synergy0.450.020.47
tni.bootstrap0.470.010.48
tni.conditional0.640.020.66
tni.dpi.filter0.640.000.64
tni.get0.580.000.57
tni.graph0.780.020.79
tni.permutation0.890.000.89
tni.preprocess1.640.011.65
tni2tna.preprocess0.640.020.65

RTN.Rcheck/examples_x64/RTN-Ex.timings:

nameusersystemelapsed
AVS-class000
RTN.data0.630.030.65
TNA-class000
TNI-class0.760.020.78
avs.evse000
avs.get000
avs.plot1000
avs.plot2000
avs.preprocess000
avs.vse000
tna.get0.50.00.5
tna.graph0.490.010.50
tna.gsea10.390.030.42
tna.gsea20.520.000.53
tna.mra0.680.000.68
tna.overlap0.520.020.53
tna.plot.gsea10.570.050.63
tna.plot.gsea20.500.010.51
tna.shadow0.570.000.56
tna.synergy0.540.000.55
tni.bootstrap0.640.020.66
tni.conditional0.670.010.68
tni.dpi.filter0.450.000.45
tni.get0.460.000.46
tni.graph0.530.000.53
tni.permutation0.790.020.81
tni.preprocess1.300.011.31
tni2tna.preprocess0.510.000.51