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BioC 3.2: CHECK report for Prize on moscato1

This page was generated on 2016-04-23 10:22:08 -0700 (Sat, 23 Apr 2016).

Package 796/1103HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Prize 1.0.0
Daryanaz Dargahi
Snapshot Date: 2016-04-22 16:20:12 -0700 (Fri, 22 Apr 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/Prize
Last Changed Rev: 109589 / Revision: 116712
Last Changed Date: 2015-10-13 12:36:05 -0700 (Tue, 13 Oct 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: Prize
Version: 1.0.0
Command: rm -rf Prize.buildbin-libdir Prize.Rcheck && mkdir Prize.buildbin-libdir Prize.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=Prize.buildbin-libdir Prize_1.0.0.tar.gz >Prize.Rcheck\00install.out 2>&1 && cp Prize.Rcheck\00install.out Prize-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=Prize.buildbin-libdir --install="check:Prize-install.out" --force-multiarch --no-vignettes --timings Prize_1.0.0.tar.gz
StartedAt: 2016-04-23 06:07:04 -0700 (Sat, 23 Apr 2016)
EndedAt: 2016-04-23 06:11:28 -0700 (Sat, 23 Apr 2016)
EllapsedTime: 263.8 seconds
RetCode: 0
Status:  OK  
CheckDir: Prize.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf Prize.buildbin-libdir Prize.Rcheck && mkdir Prize.buildbin-libdir Prize.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=Prize.buildbin-libdir Prize_1.0.0.tar.gz >Prize.Rcheck\00install.out 2>&1 && cp Prize.Rcheck\00install.out Prize-install.out  && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=Prize.buildbin-libdir --install="check:Prize-install.out" --force-multiarch --no-vignettes --timings Prize_1.0.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbld/bbs-3.2-bioc/meat/Prize.Rcheck'
* using R version 3.2.4 (2016-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'Prize/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'Prize' version '1.0.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'Prize' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [76s] OK
Examples with CPU or elapsed time > 5s
                    user system elapsed
Prize-package       9.37      0   10.19
gaggregate          6.72      0    6.72
saaty_inconsistency 5.50      0    5.51
simulation          5.45      0    5.44
** running examples for arch 'x64' ... [83s] OK
Examples with CPU or elapsed time > 5s
                    user system elapsed
Prize-package       9.34   0.00    9.56
saaty_inconsistency 6.44   0.00    6.44
IP                  6.27   0.00    6.27
ICR                 6.24   0.02    6.26
gaggregate          6.17   0.00    6.16
rainbow_plot        5.33   0.00    5.34
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'runTests.R' [12s]
 [13s] OK
** running tests for arch 'x64' ...
  Running 'runTests.R' [16s]
 [16s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

Prize.Rcheck/00install.out:


install for i386

* installing *source* package 'Prize' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'Prize' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Prize' as Prize_1.0.0.zip
* DONE (Prize)

Prize.Rcheck/examples_i386/Prize-Ex.timings:

nameusersystemelapsed
AIJ3.590.003.59
AIP1.990.002.00
CI2.690.002.68
GCR2.680.002.69
ICR4.510.004.51
IP4.400.004.39
Prize-package 9.37 0.0010.19
RM0.750.000.75
ahmatrix000
ahp0.530.000.53
ahp_matrix000
ahp_plot4.510.004.51
ahp_weights3.980.003.98
ahplot0.000.020.01
crplot0.220.000.22
dplot0.250.000.25
gaggregate6.720.006.72
pipeline3.670.003.67
rainbow_plot4.010.014.02
rainbowplot0.230.000.24
rating1.220.001.23
saaty_inconsistency5.500.005.51
simulation5.450.005.44
weight101
weight_plot4.440.004.44
wplot0.460.000.46

Prize.Rcheck/examples_x64/Prize-Ex.timings:

nameusersystemelapsed
AIJ3.640.003.63
AIP2.380.002.39
CI3.810.003.81
GCR3.680.003.68
ICR6.240.026.26
IP6.270.006.27
Prize-package9.340.009.56
RM0.640.010.66
ahmatrix000
ahp0.690.000.68
ahp_matrix000
ahp_plot3.600.023.62
ahp_weights3.680.003.69
ahplot0.050.000.04
crplot0.310.000.31
dplot0.290.000.30
gaggregate6.170.006.16
pipeline4.60.04.6
rainbow_plot5.330.005.34
rainbowplot0.410.000.40
rating1.090.001.09
saaty_inconsistency6.440.006.44
simulation4.930.004.93
weight1.250.001.25
weight_plot4.380.004.38
wplot0.560.000.65