BioC 3.2: CHECK report for MMDiff on moscato1

Package: MMDiff

Version: 1.10.0

Command: D:\biocbld\bbs-3.2-bioc\R\bin\R.exe --arch i386 CMD check --no-multiarch --no-vignettes --timings MMDiff_1.10.0.tar.gz

StartedAt: 2016-04-23 04:53:21 -0700 (Sat, 23 Apr 2016)

EndedAt: 2016-04-23 05:33:28 -0700 (Sat, 23 Apr 2016)

EllapsedTime: 2403.3 seconds

RetCode: None

Status:  TIMEOUT

CheckDir: MMDiff.Rcheck

Warnings: NA

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### Running command:
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###   D:\biocbld\bbs-3.2-bioc\R\bin\R.exe --arch i386 CMD check --no-multiarch --no-vignettes --timings MMDiff_1.10.0.tar.gz
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* using log directory 'D:/biocbld/bbs-3.2-bioc/meat/MMDiff.Rcheck'
* using R version 3.2.4 (2016-03-10)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'MMDiff/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'MMDiff' version '1.10.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .BBSoptions
These were most likely included in error. See section 'Package
structure' in the 'Writing R Extensions' manual.
* checking for portable file names ... OK
* checking whether package 'MMDiff' can be installed ... [41s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Package listed in more than one of Depends, Imports, Suggests, Enhances:
  'GenomicRanges'
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...

* installing *source* package 'MMDiff' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (MMDiff)

name	user	system	elapsed
Cfp1Dists	2.09	0.19	994.44
Cfp1Profiles	24.96	0.67	368.69
compHistDists	1.55	0.06	470.65
detPeakPvals	0.80	0.07	0.85
findOutliers	0.19	0.01	0.86
getNormFactors	0.25	0.02	0.26