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BioC 3.2: CHECK report for HilbertCurve on moscato1

This page was generated on 2016-04-23 10:22:15 -0700 (Sat, 23 Apr 2016).

Package 493/1103HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
HilbertCurve 1.0.0
Zuguang Gu
Snapshot Date: 2016-04-22 16:20:12 -0700 (Fri, 22 Apr 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/HilbertCurve
Last Changed Rev: 109589 / Revision: 116712
Last Changed Date: 2015-10-13 12:36:05 -0700 (Tue, 13 Oct 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  OK  OK [ OK ] OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: HilbertCurve
Version: 1.0.0
Command: rm -rf HilbertCurve.buildbin-libdir HilbertCurve.Rcheck && mkdir HilbertCurve.buildbin-libdir HilbertCurve.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=HilbertCurve.buildbin-libdir HilbertCurve_1.0.0.tar.gz >HilbertCurve.Rcheck\00install.out 2>&1 && cp HilbertCurve.Rcheck\00install.out HilbertCurve-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=HilbertCurve.buildbin-libdir --install="check:HilbertCurve-install.out" --force-multiarch --no-vignettes --timings HilbertCurve_1.0.0.tar.gz
StartedAt: 2016-04-23 03:36:48 -0700 (Sat, 23 Apr 2016)
EndedAt: 2016-04-23 03:41:09 -0700 (Sat, 23 Apr 2016)
EllapsedTime: 261.2 seconds
RetCode: 0
Status:  OK  
CheckDir: HilbertCurve.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf HilbertCurve.buildbin-libdir HilbertCurve.Rcheck && mkdir HilbertCurve.buildbin-libdir HilbertCurve.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=HilbertCurve.buildbin-libdir HilbertCurve_1.0.0.tar.gz >HilbertCurve.Rcheck\00install.out 2>&1 && cp HilbertCurve.Rcheck\00install.out HilbertCurve-install.out  && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=HilbertCurve.buildbin-libdir --install="check:HilbertCurve-install.out" --force-multiarch --no-vignettes --timings HilbertCurve_1.0.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbld/bbs-3.2-bioc/meat/HilbertCurve.Rcheck'
* using R version 3.2.4 (2016-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'HilbertCurve/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'HilbertCurve' version '1.0.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'HilbertCurve' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  5.4Mb
  sub-directories of 1Mb or more:
    doc   5.2Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [40s] OK
Examples with CPU or elapsed time > 5s
                              user system elapsed
hc_layer-HilbertCurve-method 22.81   0.42   23.23
hc_png-HilbertCurve-method    9.99   0.05   10.18
** running examples for arch 'x64' ... [45s] OK
Examples with CPU or elapsed time > 5s
                              user system elapsed
hc_layer-HilbertCurve-method 24.29   0.38   24.66
hc_png-HilbertCurve-method   11.92   0.10   12.07
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'test-all.R' [4s]
 [4s] OK
** running tests for arch 'x64' ...
  Running 'test-all.R' [6s]
 [7s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'D:/biocbld/bbs-3.2-bioc/meat/HilbertCurve.Rcheck/00check.log'
for details.


HilbertCurve.Rcheck/00install.out:


install for i386

* installing *source* package 'HilbertCurve' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'HilbertCurve' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'HilbertCurve' as HilbertCurve_1.0.0.zip
* DONE (HilbertCurve)

HilbertCurve.Rcheck/examples_i386/HilbertCurve-Ex.timings:

nameusersystemelapsed
HilbertCurve-class000
HilbertCurve0.590.010.60
hc_layer-HilbertCurve-method22.81 0.4223.23
hc_level-HilbertCurve-method0.040.000.05
hc_normal_points-HilbertCurve-method000
hc_png-HilbertCurve-method 9.99 0.0510.18
hc_points-HilbertCurve-method0.890.000.89
hc_rect-HilbertCurve-method0.040.000.05
hc_segmented_points-HilbertCurve-method000
hc_segments-HilbertCurve-method0.080.000.08
hc_text-HilbertCurve-method0.030.000.03
show-HilbertCurve-method000
unzoom-HilbertCurve-method0.020.000.02
zoom-HilbertCurve-method000

HilbertCurve.Rcheck/examples_x64/HilbertCurve-Ex.timings:

nameusersystemelapsed
HilbertCurve-class0.010.000.02
HilbertCurve0.920.020.94
hc_layer-HilbertCurve-method24.29 0.3824.66
hc_level-HilbertCurve-method0.030.000.03
hc_normal_points-HilbertCurve-method000
hc_png-HilbertCurve-method11.92 0.1012.07
hc_points-HilbertCurve-method0.820.011.42
hc_rect-HilbertCurve-method0.080.000.08
hc_segmented_points-HilbertCurve-method000
hc_segments-HilbertCurve-method0.130.000.12
hc_text-HilbertCurve-method0.030.000.04
show-HilbertCurve-method000
unzoom-HilbertCurve-method0.020.000.02
zoom-HilbertCurve-method0.020.000.01