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BioC 3.2: BUILD BIN report for GWASTools on moscato1

This page was generated on 2016-04-23 10:18:07 -0700 (Sat, 23 Apr 2016).

Package 481/1103HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GWASTools 1.16.1
Stephanie M. Gogarten , Adrienne Stilp
Snapshot Date: 2016-04-22 16:20:12 -0700 (Fri, 22 Apr 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/GWASTools
Last Changed Rev: 109656 / Revision: 116712
Last Changed Date: 2015-10-15 10:30:57 -0700 (Thu, 15 Oct 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: GWASTools
Version: 1.16.1
Command: cd GWASTools.buildbin-libdir/GWASTools && zip -r ../../GWASTools_1.16.1.zip . & cd ../..
StartedAt: 2016-04-23 09:35:48 -0700 (Sat, 23 Apr 2016)
EndedAt: 2016-04-23 09:36:41 -0700 (Sat, 23 Apr 2016)
EllapsedTime: 52.9 seconds
RetCode: 0
Status:  OK  
PackageFile: GWASTools_1.16.1.zip
PackageFileSize: 3.51 MiB

Command output

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###
### Running command:
###
###   cd GWASTools.buildbin-libdir/GWASTools && zip -r ../../GWASTools_1.16.1.zip . & cd ../..
###
##############################################################################
##############################################################################


Scanning files 
  adding: CITATION (188 bytes security) (deflated 29%)
  adding: data/ (208 bytes security) (stored 0%)
  adding: data/Rdata.rdb (188 bytes security) (deflated 22%)
  adding: data/Rdata.rds (188 bytes security) (stored 0%)
  adding: data/Rdata.rdx (188 bytes security) (stored 0%)
  adding: DESCRIPTION (188 bytes security) (deflated 57%)
  adding: doc/ (208 bytes security) (stored 0%)
  adding: doc/Affymetrix.pdf (188 bytes security) (deflated 8%)
  adding: doc/Affymetrix.R (188 bytes security) (deflated 76%)
  adding: doc/Affymetrix.Rnw (188 bytes security) (deflated 69%)
  adding: doc/DataCleaning.pdf (188 bytes security) (deflated 22%)
  adding: doc/DataCleaning.R (188 bytes security) (deflated 78%)
  adding: doc/DataCleaning.Rnw (188 bytes security) (deflated 71%)
  adding: doc/Formats.pdf (188 bytes security) (deflated 9%)
  adding: doc/Formats.R (188 bytes security) (deflated 77%)
  adding: doc/Formats.Rnw (188 bytes security) (deflated 67%)
  adding: doc/index.html (188 bytes security) (deflated 72%)
  adding: help/ (208 bytes security) (stored 0%)
  adding: help/aliases.rds (188 bytes security) (stored 0%)
  adding: help/AnIndex (188 bytes security) (deflated 88%)
  adding: help/GWASTools.rdb (188 bytes security) (deflated 1%)
  adding: help/GWASTools.rdx (188 bytes security) (stored 0%)
  adding: help/paths.rds (188 bytes security) (stored 0%)
  adding: html/ (208 bytes security) (stored 0%)
  adding: html/00Index.html (188 bytes security) (deflated 91%)
  adding: html/R.css (188 bytes security) (deflated 75%)
  adding: INDEX (188 bytes security) (deflated 67%)
  adding: MD5 (188 bytes security) (deflated 52%)
  adding: Meta/ (208 bytes security) (stored 0%)
  adding: Meta/data.rds (188 bytes security) (stored 0%)
  adding: Meta/hsearch.rds (188 bytes security) (deflated 0%)
  adding: Meta/links.rds (188 bytes security) (stored 0%)
  adding: Meta/nsInfo.rds (188 bytes security) (stored 0%)
  adding: Meta/package.rds (188 bytes security) (stored 0%)
  adding: Meta/Rd.rds (188 bytes security) (stored 0%)
  adding: Meta/vignette.rds (188 bytes security) (stored 0%)
  adding: NAMESPACE (188 bytes security) (deflated 69%)
  adding: NEWS.Rd (188 bytes security) (deflated 73%)
  adding: R/ (208 bytes security) (stored 0%)
  adding: R/GWASTools (188 bytes security) (deflated 41%)
  adding: R/GWASTools.rdb (188 bytes security) (deflated 22%)
  adding: R/GWASTools.rdx (188 bytes security) (deflated 0%)
  adding: unitTests/ (208 bytes security) (stored 0%)
  adding: unitTests/alleleFrequency_test.R (188 bytes security) (deflated 78%)
  adding: unitTests/allequal_test.R (188 bytes security) (deflated 41%)
  adding: unitTests/anomDetectBAF_test.R (188 bytes security) (deflated 73%)
  adding: unitTests/apartSnpSelection_test.R (188 bytes security) (deflated 57%)
  adding: unitTests/assocCoxPH_test.R (188 bytes security) (deflated 73%)
  adding: unitTests/assocRegression_test.R (188 bytes security) (deflated 84%)
  adding: unitTests/BAFfromClusterMeans_test.R (188 bytes security) (deflated 42%)
  adding: unitTests/BAFfromGenotypes_test.R (188 bytes security) (deflated 69%)
  adding: unitTests/batchChisqTest_test.R (188 bytes security) (deflated 84%)
  adding: unitTests/batchFisherTest_test.R (188 bytes security) (deflated 84%)
  adding: unitTests/checkGenotypeFile_test.R (188 bytes security) (deflated 87%)
  adding: unitTests/checkImputedDosageFile_test.R (188 bytes security) (deflated 91%)
  adding: unitTests/checkIntensityFile_test.R (188 bytes security) (deflated 83%)
  adding: unitTests/chromIntensityPlot_test.R (188 bytes security) (deflated 73%)
  adding: unitTests/convertNcdfGds_test.R (188 bytes security) (deflated 82%)
  adding: unitTests/createAffyIntensityFile_test.R (188 bytes security) (deflated 80%)
  adding: unitTests/createDataFile_test.R (188 bytes security) (deflated 88%)
  adding: unitTests/dupDosageCorAcrossDatasets_test.R (188 bytes security) (deflated 75%)
  adding: unitTests/duplicateDiscordanceAcrossDatasets_test.R (188 bytes security) (deflated 88%)
  adding: unitTests/duplicateDiscordance_test.R (188 bytes security) (deflated 80%)
  adding: unitTests/exactHWE_test.R (188 bytes security) (deflated 70%)
  adding: unitTests/findBAFvariance_test.R (188 bytes security) (deflated 63%)
  adding: unitTests/GdsGenotypeReader_test.R (188 bytes security) (deflated 85%)
  adding: unitTests/GdsIntensityReader_test.R (188 bytes security) (deflated 65%)
  adding: unitTests/GdsReader_test.R (188 bytes security) (deflated 76%)
  adding: unitTests/gdsSubsetCheck_test.R (188 bytes security) (deflated 88%)
  adding: unitTests/gdsSubset_test.R (188 bytes security) (deflated 94%)
  adding: unitTests/GenotypeData_test.R (188 bytes security) (deflated 81%)
  adding: unitTests/genotypeToCharacter_test.R (188 bytes security) (deflated 73%)
  adding: unitTests/getobj_test.R (188 bytes security) (deflated 26%)
  adding: unitTests/hetByScanChrom_test.R (188 bytes security) (deflated 69%)
  adding: unitTests/hetBySnpSex_test.R (188 bytes security) (deflated 66%)
  adding: unitTests/ibdPlot_test.R (188 bytes security) (deflated 57%)
  adding: unitTests/imputedDosageFile_test.R (188 bytes security) (deflated 89%)
  adding: unitTests/IntensityData_test.R (188 bytes security) (deflated 70%)
  adding: unitTests/MatrixGenotypeReader_test.R (188 bytes security) (deflated 70%)
  adding: unitTests/meanIntensityByScanChrom_test.R (188 bytes security) (deflated 76%)
  adding: unitTests/missingGenotypeByScanChrom_test.R (188 bytes security) (deflated 68%)
  adding: unitTests/missingGenotypeBySnpSex_test.R (188 bytes security) (deflated 71%)
  adding: unitTests/NcdfGenotypeReader_test.R (188 bytes security) (deflated 69%)
  adding: unitTests/NcdfIntensityReader_test.R (188 bytes security) (deflated 69%)
  adding: unitTests/NcdfReader_test.R (188 bytes security) (deflated 67%)
  adding: unitTests/ncdfSubset_test.R (188 bytes security) (deflated 84%)
  adding: unitTests/pedigreeCheck_test.R (188 bytes security) (deflated 76%)
  adding: unitTests/pedigreeMaxUnrelated_test.R (188 bytes security) (deflated 86%)
  adding: unitTests/pedigreePairwiseRelatedness_test.R (188 bytes security) (deflated 78%)
  adding: unitTests/plinkUtils_test.R (188 bytes security) (deflated 85%)
  adding: unitTests/pseudoautoIntensityPlot_test.R (188 bytes security) (deflated 49%)
  adding: unitTests/qualityScoreByScan_test.R (188 bytes security) (deflated 65%)
  adding: unitTests/qualityScoreBySnp_test.R (188 bytes security) (deflated 70%)
  adding: unitTests/saveas_test.R (188 bytes security) (deflated 63%)
  adding: unitTests/ScanAnnotationDataFrame_test.R (188 bytes security) (deflated 64%)
  adding: unitTests/ScanAnnotationSQLite_test.R (188 bytes security) (deflated 67%)
  adding: unitTests/setMissingGenotypes_test.R (188 bytes security) (deflated 80%)
  adding: unitTests/SnpAnnotationDataFrame_test.R (188 bytes security) (deflated 72%)
  adding: unitTests/SnpAnnotationSQLite_test.R (188 bytes security) (deflated 68%)
  adding: unitTests/snpStats_test.R (188 bytes security) (deflated 62%)
  adding: unitTests/vcfWrite_test.R (188 bytes security) (deflated 83%)