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BioC 3.2: CHECK report for EnrichedHeatmap on moscato1

This page was generated on 2016-04-23 10:22:27 -0700 (Sat, 23 Apr 2016).

Package 317/1103HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
EnrichedHeatmap 1.0.0
Zuguang Gu
Snapshot Date: 2016-04-22 16:20:12 -0700 (Fri, 22 Apr 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/EnrichedHeatmap
Last Changed Rev: 109589 / Revision: 116712
Last Changed Date: 2015-10-13 12:36:05 -0700 (Tue, 13 Oct 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: EnrichedHeatmap
Version: 1.0.0
Command: rm -rf EnrichedHeatmap.buildbin-libdir EnrichedHeatmap.Rcheck && mkdir EnrichedHeatmap.buildbin-libdir EnrichedHeatmap.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=EnrichedHeatmap.buildbin-libdir EnrichedHeatmap_1.0.0.tar.gz >EnrichedHeatmap.Rcheck\00install.out 2>&1 && cp EnrichedHeatmap.Rcheck\00install.out EnrichedHeatmap-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=EnrichedHeatmap.buildbin-libdir --install="check:EnrichedHeatmap-install.out" --force-multiarch --no-vignettes --timings EnrichedHeatmap_1.0.0.tar.gz
StartedAt: 2016-04-23 02:01:04 -0700 (Sat, 23 Apr 2016)
EndedAt: 2016-04-23 02:05:04 -0700 (Sat, 23 Apr 2016)
EllapsedTime: 240.0 seconds
RetCode: 0
Status:  OK  
CheckDir: EnrichedHeatmap.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf EnrichedHeatmap.buildbin-libdir EnrichedHeatmap.Rcheck && mkdir EnrichedHeatmap.buildbin-libdir EnrichedHeatmap.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=EnrichedHeatmap.buildbin-libdir EnrichedHeatmap_1.0.0.tar.gz >EnrichedHeatmap.Rcheck\00install.out 2>&1 && cp EnrichedHeatmap.Rcheck\00install.out EnrichedHeatmap-install.out  && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=EnrichedHeatmap.buildbin-libdir --install="check:EnrichedHeatmap-install.out" --force-multiarch --no-vignettes --timings EnrichedHeatmap_1.0.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbld/bbs-3.2-bioc/meat/EnrichedHeatmap.Rcheck'
* using R version 3.2.4 (2016-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'EnrichedHeatmap/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'EnrichedHeatmap' version '1.0.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'EnrichedHeatmap' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [33s] OK
Examples with CPU or elapsed time > 5s
                 user system elapsed
EnrichedHeatmap 14.16   0.08   14.47
anno_enriched    8.75   0.09    8.84
** running examples for arch 'x64' ... [29s] OK
Examples with CPU or elapsed time > 5s
                 user system elapsed
EnrichedHeatmap 13.63   0.05   13.79
anno_enriched    7.21   0.09    7.30
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'test-all.R' [4s]
 [4s] OK
** running tests for arch 'x64' ...
  Running 'test-all.R' [5s]
 [5s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

EnrichedHeatmap.Rcheck/00install.out:


install for i386

* installing *source* package 'EnrichedHeatmap' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'EnrichedHeatmap' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'EnrichedHeatmap' as EnrichedHeatmap_1.0.0.zip
* DONE (EnrichedHeatmap)

EnrichedHeatmap.Rcheck/examples_i386/EnrichedHeatmap-Ex.timings:

nameusersystemelapsed
EnrichedHeatmap-class000
EnrichedHeatmap14.16 0.0814.47
EnrichedHeatmapList-class000
EnrichedHeatmapList000
Extract.normalizeToMatrix000
add.AdditiveUnit000
anno_enriched8.750.098.84
draw-EnrichedHeatmap-method000
draw-EnrichedHeatmapList-method000
draw-dispatch000
enriched_score000
makeWindows0.310.000.32
normalizeToMatrix2.390.002.38
print.normalizeToMatrix000
show-EnrichedHeatmap-method0.010.000.02
show-EnrichedHeatmapList-method000
show-dispatch000

EnrichedHeatmap.Rcheck/examples_x64/EnrichedHeatmap-Ex.timings:

nameusersystemelapsed
EnrichedHeatmap-class000
EnrichedHeatmap13.63 0.0513.79
EnrichedHeatmapList-class000
EnrichedHeatmapList000
Extract.normalizeToMatrix000
add.AdditiveUnit000
anno_enriched7.210.097.30
draw-EnrichedHeatmap-method000
draw-EnrichedHeatmapList-method000
draw-dispatch000
enriched_score000
makeWindows0.360.000.36
normalizeToMatrix2.150.002.15
print.normalizeToMatrix000
show-EnrichedHeatmap-method000
show-EnrichedHeatmapList-method000
show-dispatch000