Back to Build/check report for BioC 3.19 annotations |
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This page was generated on 2024-05-15 08:30:04 -0400 (Wed, 15 May 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4751 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 12/46 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
BioMartGOGeneSets 0.99.11 (landing page) Zuguang Gu
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | ERROR | skipped | ||||||||
To the developers/maintainers of the BioMartGOGeneSets package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: BioMartGOGeneSets |
Version: 0.99.11 |
Command: /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data BioMartGOGeneSets |
StartedAt: 2024-05-15 06:31:12 -0400 (Wed, 15 May 2024) |
EndedAt: 2024-05-15 06:31:46 -0400 (Wed, 15 May 2024) |
EllapsedTime: 33.7 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data BioMartGOGeneSets ### ############################################################################## ############################################################################## * checking for file ‘BioMartGOGeneSets/DESCRIPTION’ ... OK * preparing ‘BioMartGOGeneSets’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘biomart.Rmd’ using rmarkdown Quitting from lines at lines 93-95 [unnamed-chunk-9] (biomart.Rmd) Error: processing vignette 'biomart.Rmd' failed with diagnostics: Query ERROR: caught BioMart::Exception::Database: Error during query execution: Table 'ensembl_mart_112.hsapiens_gene_ensembl__ontology_go__dm' doesn't exist --- failed re-building ‘biomart.Rmd’ --- re-building ‘genesets.Rmd’ using rmarkdown --- finished re-building ‘genesets.Rmd’ --- re-building ‘supported_organisms.Rmd’ using rmarkdown --- finished re-building ‘supported_organisms.Rmd’ --- re-building ‘version.Rmd’ using rmarkdown --- finished re-building ‘version.Rmd’ SUMMARY: processing the following file failed: ‘biomart.Rmd’ Error: Vignette re-building failed. Execution halted