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This page was generated on 2024-05-30 11:35:58 -0400 (Thu, 30 May 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 (2024-04-24) -- "Puppy Cup" 4753
lconwaymacOS 12.7.1 Montereyx86_644.4.0 (2024-04-24) -- "Puppy Cup" 4518
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 2104/2300HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
supraHex 1.42.0  (landing page)
Hai Fang
Snapshot Date: 2024-05-29 14:00:10 -0400 (Wed, 29 May 2024)
git_url: https://git.bioconductor.org/packages/supraHex
git_branch: RELEASE_3_19
git_last_commit: 7ffe698
git_last_commit_date: 2024-04-30 10:33:03 -0400 (Tue, 30 Apr 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.6.5 Ventura / arm64see weekly results here

CHECK results for supraHex on lconway


To the developers/maintainers of the supraHex package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/supraHex.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: supraHex
Version: 1.42.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:supraHex.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings supraHex_1.42.0.tar.gz
StartedAt: 2024-05-30 00:08:52 -0400 (Thu, 30 May 2024)
EndedAt: 2024-05-30 00:10:16 -0400 (Thu, 30 May 2024)
EllapsedTime: 84.6 seconds
RetCode: 0
Status:   OK  
CheckDir: supraHex.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:supraHex.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings supraHex_1.42.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.19-bioc/meat/supraHex.Rcheck’
* using R version 4.4.0 (2024-04-24)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘supraHex/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘supraHex’ version ‘1.42.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘supraHex’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

supraHex.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL supraHex
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’
* installing *source* package ‘supraHex’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (supraHex)

Tests output


Example timings

supraHex.Rcheck/supraHex-Ex.timings

nameusersystemelapsed
sBMH0.0640.0090.073
sCompReorder2.7730.1692.977
sDistance0.3320.0090.345
sDmat0.3260.0080.337
sDmatCluster0.4130.0080.422
sDmatMinima0.3370.0060.346
sHexDist0.0090.0010.010
sHexGrid0.0020.0010.003
sHexGridVariant0.0020.0010.002
sHexPolygon0.1060.0010.107
sInitial0.0160.0000.018
sMapOverlay0.3910.0160.410
sNeighAny0.0130.0010.014
sNeighDirect0.0090.0010.011
sPipeline0.0010.0010.001
sTopology0.0540.0100.065
sTrainBatch0.0500.0030.054
sTrainSeq0.3920.0050.401
sTrainology0.0100.0010.011
sWriteData0.8800.0470.939
visColoralpha0.0040.0000.005
visColorbar0.0250.0010.026
visColormap0.0030.0010.005
visCompReorder3.6960.2984.030
visDmatCluster0.0000.0000.001
visDmatHeatmap0.0000.0000.001
visHeatmap0.1010.0020.104
visHeatmapAdv0.3790.0110.395
visHexAnimate0.0010.0000.002
visHexBarplot0.8430.0580.910
visHexComp0.3180.0090.330
visHexGrid0.2900.0070.300
visHexMapping1.4970.0961.621
visHexMulComp1.1430.0771.232
visHexPattern1.5250.1641.707
visKernels0.0110.0110.022
visTreeBSclust0.0000.0000.001
visTreeBootstrap0.0010.0000.001
visVp0.0170.0120.030