Multiple platform build/check report for BioC 3.19 - BUILD results for scTensor on merida1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 22.04.3 LTS)	x86_64	4.4.0 (2024-04-24) -- "Puppy Cup"	4760
palomino3	Windows Server 2022 Datacenter	x64	4.4.0 (2024-04-24 ucrt) -- "Puppy Cup"	4494
merida1	macOS 12.7.4 Monterey	x86_64	4.4.0 (2024-04-24) -- "Puppy Cup"	4508
kjohnson1	macOS 13.6.6 Ventura	arm64	4.4.0 (2024-04-24) -- "Puppy Cup"	4466
palomino7	Windows Server 2022 Datacenter	x64	4.4.1 (2024-06-14 ucrt) -- "Race for Your Life"	4362
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for scTensor on merida1

To the developers/maintainers of the scTensor package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/scTensor.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: scTensor

Version: 2.14.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data scTensor

StartedAt: 2024-06-26 22:49:46 -0400 (Wed, 26 Jun 2024)

EndedAt: 2024-06-26 22:54:32 -0400 (Wed, 26 Jun 2024)

EllapsedTime: 286.5 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data scTensor
###
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* checking for file ‘scTensor/DESCRIPTION’ ... OK
* preparing ‘scTensor’:
* checking DESCRIPTION meta-information ... OK
* installing the package to process help pages
* saving partial Rd database
* creating vignettes ... ERROR
--- re-building ‘scTensor.Rmd’ using rmarkdown
2024-06-26 22:53:25.492 R[89579:1245554343] XType: com.apple.fonts is not accessible.
2024-06-26 22:53:25.492 R[89579:1245554343] XType: XTFontStaticRegistry is enabled.
Warning: The label(s) fig:cellCellSetting not found
--- finished re-building ‘scTensor.Rmd’

--- re-building ‘scTensor_1_Data_format_ID_Conversion.Rmd’ using rmarkdown

Quitting from lines 152-164 [Ensembl with AnnotationHub] (scTensor_1_Data_format_ID_Conversion.Rmd)
Error: processing vignette 'scTensor_1_Data_format_ID_Conversion.Rmd' failed with diagnostics:
failed to load resource
  name: AH116710
  title: org.Hs.eg.db.sqlite
  reason: file is not a database
--- failed re-building ‘scTensor_1_Data_format_ID_Conversion.Rmd’

--- re-building ‘scTensor_2_Report_Interpretation.Rmd’ using rmarkdown
Warning: call dbDisconnect() when finished working with a connection
--- finished re-building ‘scTensor_2_Report_Interpretation.Rmd’

--- re-building ‘scTensor_3_CCI_Simulation.Rmd’ using rmarkdown
--- finished re-building ‘scTensor_3_CCI_Simulation.Rmd’

--- re-building ‘scTensor_4_Reanalysis.Rmd’ using rmarkdown
--- finished re-building ‘scTensor_4_Reanalysis.Rmd’

SUMMARY: processing the following file failed:
  ‘scTensor_1_Data_format_ID_Conversion.Rmd’

Error: Vignette re-building failed.
Execution halted