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This page was generated on 2024-07-12 17:42 -0400 (Fri, 12 Jul 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4741
palomino7Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4483
merida1macOS 12.7.4 Montereyx86_644.4.1 (2024-06-14) -- "Race for Your Life" 4512
kjohnson1macOS 13.6.6 Venturaarm644.4.1 (2024-06-14) -- "Race for Your Life" 4461
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1279/2300HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
miQC 1.12.0  (landing page)
Ariel Hippen
Snapshot Date: 2024-07-10 14:00 -0400 (Wed, 10 Jul 2024)
git_url: https://git.bioconductor.org/packages/miQC
git_branch: RELEASE_3_19
git_last_commit: 874ca37
git_last_commit_date: 2024-04-30 11:31:52 -0400 (Tue, 30 Apr 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  
merida1macOS 12.7.4 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.6 Ventura / arm64  OK    ERROR  skippedskipped

BUILD results for miQC on kjohnson1

To the developers/maintainers of the miQC package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/miQC.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: miQC
Version: 1.12.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data miQC
StartedAt: 2024-07-11 03:23:26 -0400 (Thu, 11 Jul 2024)
EndedAt: 2024-07-11 03:24:55 -0400 (Thu, 11 Jul 2024)
EllapsedTime: 89.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data miQC
###
##############################################################################
##############################################################################


* checking for file ‘miQC/DESCRIPTION’ ... OK
* preparing ‘miQC’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘miQC.Rmd’ using rmarkdown
2024-07-11 03:24:28.135 R[65014:126313256] XType: Using static font registry.

Quitting from lines 278-284 [unnamed-chunk-18] (miQC.Rmd)
Error: processing vignette 'miQC.Rmd' failed with diagnostics:
failed to load resource
  name: AH73905
  title: Ensembl 97 EnsDb for Mus musculus
  reason: Required tables gene, tx, tx2exon, exon, chromosome are not present in the database!
--- failed re-building ‘miQC.Rmd’

SUMMARY: processing the following file failed:
  ‘miQC.Rmd’

Error: Vignette re-building failed.
Execution halted