Multiple platform build/check report for BioC 3.19 - CHECK results for graper on merida1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 22.04.3 LTS)	x86_64	4.4.1 (2024-06-14) -- "Race for Your Life"	4741
palomino7	Windows Server 2022 Datacenter	x64	4.4.1 (2024-06-14 ucrt) -- "Race for Your Life"	4483
merida1	macOS 12.7.4 Monterey	x86_64	4.4.1 (2024-06-14) -- "Race for Your Life"	4512
kjohnson1	macOS 13.6.6 Ventura	arm64	4.4.1 (2024-06-14) -- "Race for Your Life"	4461
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

CHECK results for graper on merida1

To the developers/maintainers of the graper package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/graper.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: graper

Version: 1.20.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:graper.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings graper_1.20.0.tar.gz

StartedAt: 2024-07-11 05:32:16 -0400 (Thu, 11 Jul 2024)

EndedAt: 2024-07-11 05:34:32 -0400 (Thu, 11 Jul 2024)

EllapsedTime: 136.2 seconds

RetCode: 0

Status: WARNINGS

CheckDir: graper.Rcheck

Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:graper.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings graper_1.20.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.19-bioc/meat/graper.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.5
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘graper/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘graper’ version ‘1.20.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘graper’ can be installed ... WARNING
Found the following significant warnings:
  /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/BH/include/boost/math/tools/config.hpp:23:6: warning: "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-W#warnings]
  #    warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)"
See ‘/Users/biocbuild/bbs-3.19-bioc/meat/graper.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
* used SDK: ‘MacOSX11.3.sdk’
* checking C++ specification ... NOTE
  Specified C++11: please drop specification unless essential
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) predict.graper.Rd:19-21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:23-24: Lost braces in \itemize; meant \describe ?
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 3 NOTEs
See
  ‘/Users/biocbuild/bbs-3.19-bioc/meat/graper.Rcheck/00check.log’
for details.

Installation output

graper.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL graper
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’
* installing *source* package ‘graper’ ...
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using C++11
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch x86_64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/BH/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c RcppExports.cpp -o RcppExports.o
clang++ -arch x86_64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/BH/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c fit_graper.cpp -o fit_graper.o
In file included from fit_graper.cpp:4:
In file included from ./graper_linear_dense_ff.h:2:
In file included from /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/BH/include/boost/math/special_functions/digamma.hpp:15:
In file included from /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/BH/include/boost/math/special_functions/math_fwd.hpp:29:
In file included from /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/BH/include/boost/math/special_functions/detail/round_fwd.hpp:11:
/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/BH/include/boost/math/tools/config.hpp:23:6: warning: "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-W#warnings]
#    warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)"
     ^
1 warning generated.
clang++ -arch x86_64 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o graper.so RcppExports.o fit_graper.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/x86_64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/00LOCK-graper/00new/graper/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (graper)

Tests output

graper.Rcheck/tests/testthat.Rout


R version 4.4.1 (2024-06-14) -- "Race for Your Life"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(graper)
> 
> test_check("graper")
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-850.435
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-575.085
ELB improved by 275.35

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-515.074
ELB improved by 60.0105

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-474.142
ELB improved by 40.932

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-455.884
ELB improved by 18.2586

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-448.569
ELB improved by 7.31446

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.406
ELB improved by 4.16341

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.127
ELB improved by 3.27916

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.123
ELB improved by 3.00371

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.256
ELB improved by 2.86679

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.51
ELB improved by 2.74616

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.925
ELB improved by 2.58534

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.588
ELB improved by 2.33716

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.603
ELB improved by 1.98502

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.029
ELB improved by 1.57391

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.84
ELB improved by 1.1881

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.951
ELB improved by 0.889028

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.264
ELB improved by 0.687235

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.702
ELB improved by 0.562213

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.213
ELB improved by 0.489224

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.762
ELB improved by 0.451041

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.323
ELB improved by 0.439066

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.871
ELB improved by 0.451197

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.383
ELB improved by 0.488227

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.836
ELB improved by 0.547482

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.219
ELB improved by 0.617141

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.535
ELB improved by 0.683589

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.788
ELB improved by 0.746813

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.97
ELB improved by 0.818375

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.062
ELB improved by 0.908354

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.044
ELB improved by 1.01754

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.904
ELB improved by 1.13988

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.623
ELB improved by 1.2815

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.166
ELB improved by 1.45709

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.531
ELB improved by 1.63486

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.786
ELB improved by 1.74496

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.033
ELB improved by 1.75261

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.395
ELB improved by 1.6378

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.991
ELB improved by 1.40474

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.881
ELB improved by 1.10962

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.055
ELB improved by 0.825935

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.456
ELB improved by 0.598629

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.024
ELB improved by 0.432132

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.714
ELB improved by 0.310416

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.493
ELB improved by 0.22065

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.336
ELB improved by 0.156652

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.224
ELB improved by 0.112909

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.14
ELB improved by 0.0837638

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.075
ELB improved by 0.0646364

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.023
ELB improved by 0.052261

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.978
ELB improved by 0.0444487

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.939
ELB improved by 0.0398094

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.901
ELB improved by 0.0375029

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.864
ELB improved by 0.0370164

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.826
ELB improved by 0.0379382

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.787
ELB improved by 0.0397054

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.745
ELB improved by 0.0413982

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.703
ELB improved by 0.0418257

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.663
ELB improved by 0.0401039

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.627
ELB improved by 0.0363379

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.595
ELB improved by 0.0315936

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.568
ELB improved by 0.0271319

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.544
ELB improved by 0.0237766

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.522
ELB improved by 0.0218802

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.501
ELB improved by 0.0216232

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.477
ELB improved by 0.0233505

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.45
ELB improved by 0.0279196

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.412
ELB improved by 0.0371821

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.358
ELB improved by 0.0546282

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.272
ELB improved by 0.0853855

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.14
ELB improved by 0.132136

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.957
ELB improved by 0.182767

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.752
ELB improved by 0.205532

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.566
ELB improved by 0.185473

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.415
ELB improved by 0.151518

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.283
ELB improved by 0.132439

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.154
ELB improved by 0.128841

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.024
ELB improved by 0.129594

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.892
ELB improved by 0.131664

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.748
ELB improved by 0.144262

iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.582
ELB improved by 0.166557

iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.418
ELB improved by 0.163966

iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.301
ELB improved by 0.116631

iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.232
ELB improved by 0.0685148

iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.188
ELB improved by 0.0448768

iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.152
ELB improved by 0.0356332

iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.121
ELB improved by 0.0313783

iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.092
ELB improved by 0.0283979

iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.067
ELB improved by 0.0253798

iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.045
ELB improved by 0.0220325

iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.026
ELB improved by 0.0185745

iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.011
ELB improved by 0.0153695

iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.998
ELB improved by 0.0126705

iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.988
ELB improved by 0.0105438

iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.979
ELB improved by 0.00892407

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-876.125
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-558.059
ELB improved by 318.066

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-504.321
ELB improved by 53.7381

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-474.702
ELB improved by 29.6187

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-461.807
ELB improved by 12.8953

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-455.606
ELB improved by 6.20054

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-450.871
ELB improved by 4.73477

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-446.063
ELB improved by 4.80815

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.624
ELB improved by 5.43927

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.163
ELB improved by 6.46131

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.604
ELB improved by 7.55848

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.696
ELB improved by 7.90764

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.032
ELB improved by 6.66466

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.56
ELB improved by 4.47224

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.79
ELB improved by 2.7693

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.017
ELB improved by 1.77338

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.84
ELB improved by 1.17675

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.033
ELB improved by 0.80672

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.469
ELB improved by 0.563955

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.063
ELB improved by 0.406664

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.753
ELB improved by 0.30975

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.503
ELB improved by 0.249954

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.292
ELB improved by 0.211485

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.106
ELB improved by 0.185686

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.938
ELB improved by 0.168018

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.782
ELB improved by 0.155992

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.634
ELB improved by 0.14814

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.49
ELB improved by 0.143541

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.349
ELB improved by 0.141594

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.207
ELB improved by 0.141899

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.063
ELB improved by 0.144194

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.914
ELB improved by 0.148315

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.76
ELB improved by 0.154177

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.598
ELB improved by 0.161755

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.427
ELB improved by 0.171077

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.245
ELB improved by 0.182218

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.05
ELB improved by 0.195284

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.839
ELB improved by 0.210406

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.612
ELB improved by 0.227707

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.364
ELB improved by 0.247273

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.095
ELB improved by 0.269088

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.802
ELB improved by 0.292961

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.484
ELB improved by 0.318436

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.139
ELB improved by 0.344696

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.769
ELB improved by 0.370478

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.375
ELB improved by 0.39398

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.962
ELB improved by 0.412687

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.539
ELB improved by 0.423264

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.117
ELB improved by 0.422136

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.709
ELB improved by 0.407516

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.328
ELB improved by 0.381492

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.978
ELB improved by 0.34929

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.662
ELB improved by 0.3164

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.375
ELB improved by 0.287025

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.11
ELB improved by 0.264413

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.859
ELB improved by 0.2515

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.609
ELB improved by 0.250105

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.353
ELB improved by 0.256063

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.1
ELB improved by 0.252525

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.878
ELB improved by 0.222404

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.702
ELB improved by 0.175728

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.567
ELB improved by 0.134858

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.46
ELB improved by 0.10679

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.373
ELB improved by 0.0878178

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.299
ELB improved by 0.0738677

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.236
ELB improved by 0.0628811

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.182
ELB improved by 0.0540686

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.135
ELB improved by 0.0471026

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.093
ELB improved by 0.0417406

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.055
ELB improved by 0.0377343

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.02
ELB improved by 0.0348481

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.988
ELB improved by 0.032888

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.956
ELB improved by 0.0317099

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.925
ELB improved by 0.0312067

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.893
ELB improved by 0.031278

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.862
ELB improved by 0.0317869

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.829
ELB improved by 0.0325055

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.796
ELB improved by 0.0330748

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.763
ELB improved by 0.0330243

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.731
ELB improved by 0.0319069

iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.702
ELB improved by 0.0295317

iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.675
ELB improved by 0.0261345

iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.653
ELB improved by 0.022301

iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.634
ELB improved by 0.0186664

iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.619
ELB improved by 0.0156398

iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.605
ELB improved by 0.0133379

iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.594
ELB improved by 0.0116856

iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.583
ELB improved by 0.0105442

iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.573
ELB improved by 0.00979185

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-851.639
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-633.018
ELB improved by 218.621

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-579.057
ELB improved by 53.9611

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-527.544
ELB improved by 51.5133

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-488.418
ELB improved by 39.1262

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-467.588
ELB improved by 20.8297

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-457.651
ELB improved by 9.93656

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-451.417
ELB improved by 6.23421

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-445.848
ELB improved by 5.56886

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.054
ELB improved by 5.79389

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.856
ELB improved by 6.19863

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.6
ELB improved by 6.25526

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.01
ELB improved by 5.59092

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.631
ELB improved by 4.37882

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.453
ELB improved by 3.1775

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.135
ELB improved by 2.31834

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.4
ELB improved by 1.73445

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.112
ELB improved by 1.28806

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.144
ELB improved by 0.968604

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.393
ELB improved by 0.750652

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.816
ELB improved by 0.577064

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.381
ELB improved by 0.435238

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.047
ELB improved by 0.333814

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.78
ELB improved by 0.266652

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.559
ELB improved by 0.221331

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.37
ELB improved by 0.189021

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.205
ELB improved by 0.164852

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.059
ELB improved by 0.146163

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.928
ELB improved by 0.131381

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.808
ELB improved by 0.119491

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.698
ELB improved by 0.109796

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.597
ELB improved by 0.101793

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.501
ELB improved by 0.0951097

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.412
ELB improved by 0.0894632

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.327
ELB improved by 0.0846337

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.247
ELB improved by 0.0804485

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.17
ELB improved by 0.07677

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.097
ELB improved by 0.0734881

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.026
ELB improved by 0.070514

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.958
ELB improved by 0.0677764

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.893
ELB improved by 0.0652182

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.83
ELB improved by 0.0627944

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.77
ELB improved by 0.0604701

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.712
ELB improved by 0.0582194

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.656
ELB improved by 0.0560237

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.602
ELB improved by 0.053871

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.55
ELB improved by 0.0517547

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.5
ELB improved by 0.0496729

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.453
ELB improved by 0.0476269

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.407
ELB improved by 0.0456212

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.363
ELB improved by 0.0436619

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.322
ELB improved by 0.0417568

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.282
ELB improved by 0.0399137

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.244
ELB improved by 0.038141

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.207
ELB improved by 0.0364463

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.172
ELB improved by 0.0348365

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.139
ELB improved by 0.0333176

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.107
ELB improved by 0.0318943

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.077
ELB improved by 0.0305701

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.047
ELB improved by 0.0293474

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.019
ELB improved by 0.0282273

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.992
ELB improved by 0.02721

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.965
ELB improved by 0.0262948

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.94
ELB improved by 0.0254803

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.915
ELB improved by 0.0247645

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.891
ELB improved by 0.0241452

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.867
ELB improved by 0.0236197

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.844
ELB improved by 0.0231854

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.821
ELB improved by 0.0228395

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.799
ELB improved by 0.0225796

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.776
ELB improved by 0.0224032

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.754
ELB improved by 0.0223079

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.732
ELB improved by 0.0222916

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.709
ELB improved by 0.0223525

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.687
ELB improved by 0.0224889

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.664
ELB improved by 0.0226989

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.641
ELB improved by 0.0229809

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.618
ELB improved by 0.0233333

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.594
ELB improved by 0.0237541

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.57
ELB improved by 0.0242408

iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.545
ELB improved by 0.0247907

iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.52
ELB improved by 0.0254002

iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.494
ELB improved by 0.0260647

iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.467
ELB improved by 0.0267785

iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.439
ELB improved by 0.0275344

iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.411
ELB improved by 0.0283234

iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.382
ELB improved by 0.0291347

iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.352
ELB improved by 0.0299556

iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.321
ELB improved by 0.0307708

iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.29
ELB improved by 0.0315632

iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.257
ELB improved by 0.0323132

iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.224
ELB improved by 0.0329997

iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.191
ELB improved by 0.0336004

iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.157
ELB improved by 0.034092

iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.122
ELB improved by 0.0344517

iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.088
ELB improved by 0.0346581

iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.053
ELB improved by 0.034692

iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.018
ELB improved by 0.0345381

iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.984
ELB improved by 0.0341857

iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.951
ELB improved by 0.0336298

iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.918
ELB improved by 0.0328717

iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.886
ELB improved by 0.0319193

iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.855
ELB improved by 0.0307868

iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.825
ELB improved by 0.0294941

iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.797
ELB improved by 0.0280661

iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.771
ELB improved by 0.026531

iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.746
ELB improved by 0.0249192

iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.723
ELB improved by 0.0232615

iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.701
ELB improved by 0.0215878

iteration 110
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.681
ELB improved by 0.019926

iteration 111
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.663
ELB improved by 0.0183005

iteration 112
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.646
ELB improved by 0.0167324

iteration 113
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.631
ELB improved by 0.0152383

iteration 114
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.617
ELB improved by 0.0138308

iteration 115
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.605
ELB improved by 0.0125183

iteration 116
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.593
ELB improved by 0.0113057

iteration 117
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.583
ELB improved by 0.0101947

iteration 118
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.574
ELB improved by 0.00918426

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-832.019
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-583.523
ELB improved by 248.496

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-522.728
ELB improved by 60.7952

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-475.127
ELB improved by 47.6013

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-450.908
ELB improved by 24.2181

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.19
ELB improved by 10.7187

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.222
ELB improved by 5.9679

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.322
ELB improved by 4.9003

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.38
ELB improved by 4.94167

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.28
ELB improved by 5.09993

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.419
ELB improved by 4.86053

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.411
ELB improved by 4.00802

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.54
ELB improved by 2.87138

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.629
ELB improved by 1.91122

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.374
ELB improved by 1.25515

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.559
ELB improved by 0.815077

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.031
ELB improved by 0.527171

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.679
ELB improved by 0.352605

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.429
ELB improved by 0.24945

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.243
ELB improved by 0.186135

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.098
ELB improved by 0.144828

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.982
ELB improved by 0.11631

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.886
ELB improved by 0.0956992

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.806
ELB improved by 0.0802511

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.738
ELB improved by 0.0683263

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.679
ELB improved by 0.0588977

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.628
ELB improved by 0.0512946

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.583
ELB improved by 0.0450633

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.543
ELB improved by 0.0398876

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.507
ELB improved by 0.0355402

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.475
ELB improved by 0.0318543

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.447
ELB improved by 0.028704

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.421
ELB improved by 0.025993

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.397
ELB improved by 0.023646

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.375
ELB improved by 0.0216035

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.355
ELB improved by 0.0198177

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.337
ELB improved by 0.0182499

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.32
ELB improved by 0.0168683

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.305
ELB improved by 0.015647

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.29
ELB improved by 0.014564

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.277
ELB improved by 0.0136013

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.264
ELB improved by 0.0127435

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.252
ELB improved by 0.0119776

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.241
ELB improved by 0.0112926

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.23
ELB improved by 0.0106791

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.22
ELB improved by 0.010129

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.21
ELB improved by 0.00963541

ELB converged
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ]
> 
> proc.time()
   user  system elapsed 
  4.709   0.482   5.847

Example timings

graper.Rcheck/graper-Ex.timings

name	user	system	elapsed
coef.graper	0.088	0.043	0.155
getPIPs	0.078	0.038	0.137
graper	0.129	0.053	0.213
makeExampleData	0.019	0.003	0.026
makeExampleDataWithUnequalGroups	0.046	0.005	0.064
plotELBO	0.424	0.045	0.544
plotGroupPenalties	1.763	0.065	2.128
plotPosterior	1.244	0.049	1.512
predict.graper	3.121	0.211	3.847
print.graper	0.073	0.029	0.120