##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:fcScan.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings fcScan_1.18.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.19-bioc/meat/fcScan.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.4
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘fcScan/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘fcScan’ version ‘1.18.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘fcScan’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘runTests.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL fcScan
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’
* installing *source* package ‘fcScan’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (fcScan)

R version 4.4.1 (2024-06-14) -- "Race for Your Life"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> BiocGenerics:::testPackage("fcScan")
Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: BiocGenerics

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, table, tapply,
    union, unique, unsplit, which.max, which.min

Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following object is masked from 'package:utils':

    findMatches

The following objects are masked from 'package:base':

    I, expand.grid, unname

Loading required package: IRanges
Loading required package: GenomeInfoDb
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.663105 secs
Sites in condition do not match sites in data
3  entries loaded 
Running getCluster using 1 threads
Time difference of 0.246495 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.2625549 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.2473981 secs
17  entries loaded 
Running getCluster using 1 threads
No cluster found
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.230345 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.2109671 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.2369411 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.2014081 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.201472 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1849771 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 0.2034669 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 0.2064159 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 0.179074 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1867752 secs
10  entries loaded 
Running getCluster using 1 threads
Time difference of 0.2149861 secs
10  entries loaded 
Running getCluster using 1 threads
No cluster found
10  entries loaded 
Running getCluster using 1 threads
Time difference of 0.2121811 secs
16  entries loaded 
Running getCluster using 1 threads
Time difference of 0.178422 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 0.194593 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1918218 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 0.2087479 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 0.224566 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 0.2258141 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.2227552 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.2380049 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.2469101 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.2420821 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.2022429 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.182703 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1761649 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.2798488 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.2479491 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.284121 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.3182888 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.226186 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.2746029 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.2768459 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.2086489 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.2172542 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1969681 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.2702479 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.2096028 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.271085 secs


RUNIT TEST PROTOCOL -- Mon Jul  8 04:43:42 2024 
*********************************************** 
Number of test functions: 1 
Number of errors: 0 
Number of failures: 0 

 
1 Test Suite : 
fcScan RUnit Tests - 1 test function, 0 errors, 0 failures
Number of test functions: 1 
Number of errors: 0 
Number of failures: 0 
> 
> proc.time()
   user  system elapsed 
 34.988   2.173  44.189