Back to Multiple platform build/check report for BioC 3.19: simplified long |
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This page was generated on 2024-05-30 11:35:31 -0400 (Thu, 30 May 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4753 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4518 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 486/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
cyanoFilter 1.12.0 (landing page) Oluwafemi Olusoji
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kjohnson3 | macOS 13.6.5 Ventura / arm64 | see weekly results here | ||||||||||||
To the developers/maintainers of the cyanoFilter package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/cyanoFilter.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: cyanoFilter |
Version: 1.12.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:cyanoFilter.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings cyanoFilter_1.12.0.tar.gz |
StartedAt: 2024-05-29 20:07:28 -0400 (Wed, 29 May 2024) |
EndedAt: 2024-05-29 20:09:35 -0400 (Wed, 29 May 2024) |
EllapsedTime: 126.5 seconds |
RetCode: 0 |
Status: OK |
CheckDir: cyanoFilter.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:cyanoFilter.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings cyanoFilter_1.12.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.19-bioc/meat/cyanoFilter.Rcheck’ * using R version 4.4.0 (2024-04-24) * using platform: x86_64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Monterey 12.7.1 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘cyanoFilter/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘cyanoFilter’ version ‘1.12.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘cyanoFilter’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed gateFunc 12.616 0.842 10.722 * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
cyanoFilter.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL cyanoFilter ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’ * installing *source* package ‘cyanoFilter’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cyanoFilter)
cyanoFilter.Rcheck/cyanoFilter-Ex.timings
name | user | system | elapsed | |
MarginEvents | 1.143 | 0.098 | 1.253 | |
PhytoFilter | 0.820 | 0.084 | 0.922 | |
PhytopFilter | 0.841 | 0.088 | 0.943 | |
accTest | 0.516 | 0.043 | 0.568 | |
accuracy | 0.504 | 0.055 | 0.563 | |
cellmargin | 0.411 | 0.035 | 0.456 | |
clusterExtract | 1.066 | 0.061 | 1.140 | |
clusterExtractp | 1.237 | 0.063 | 1.315 | |
debrisNc | 0.426 | 0.057 | 0.488 | |
fullFlowframe-MarginEvents-method | 0.380 | 0.026 | 0.412 | |
fullFlowframe-PhytopFilter-method | 1.007 | 0.083 | 1.101 | |
fullFlowframe | 0.385 | 0.036 | 0.430 | |
gateFunc | 12.616 | 0.842 | 10.722 | |
ggpairsDens | 3.960 | 0.156 | 4.148 | |
ggplotDens | 1.009 | 0.063 | 1.083 | |
ggplotDens2 | 1.032 | 0.062 | 1.105 | |
goodfcs | 0.063 | 0.010 | 0.074 | |
is.DebrisFilter | 0.000 | 0.000 | 0.001 | |
is.MarginEvents | 0.000 | 0.000 | 0.001 | |
is.PhytopFilter | 0.000 | 0.001 | 0.000 | |
is.flowFrame | 0.001 | 0.000 | 0.001 | |
is.flowSet | 0.000 | 0.000 | 0.001 | |
lnTrans | 0.266 | 0.021 | 0.292 | |
newFlowframe | 0.281 | 0.095 | 0.380 | |
nona | 0.151 | 0.019 | 0.173 | |
noneg | 0.220 | 0.018 | 0.240 | |
oneDgate | 0.280 | 0.103 | 0.386 | |
pairsPlot | 2.176 | 0.205 | 2.417 | |
pigmentGate | 0.369 | 0.066 | 0.440 | |
reducedFlowframe-MarginEvents-method | 0.400 | 0.028 | 0.435 | |
reducedFlowframe | 0.414 | 0.039 | 0.460 | |
retain | 0.031 | 0.002 | 0.033 | |
rowNumbers | 0.279 | 0.070 | 0.357 | |
summaries-DebrisFilter-method | 0.383 | 0.029 | 0.422 | |
summaries-MarginEvents-method | 0.398 | 0.033 | 0.439 | |
summaries-PhytopFilter-method | 0.771 | 0.054 | 0.842 | |
summaries | 0.375 | 0.025 | 0.405 | |