Back to Multiple platform build/check report for BioC 3.19: simplified long |
|
This page was generated on 2024-05-30 11:35:28 -0400 (Thu, 30 May 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4753 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4518 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 349/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
chromstaR 1.30.0 (landing page) Aaron Taudt
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
kjohnson3 | macOS 13.6.5 Ventura / arm64 | see weekly results here | ||||||||||||
To the developers/maintainers of the chromstaR package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/chromstaR.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: chromstaR |
Version: 1.30.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data chromstaR |
StartedAt: 2024-05-29 16:17:22 -0400 (Wed, 29 May 2024) |
EndedAt: 2024-05-29 16:22:35 -0400 (Wed, 29 May 2024) |
EllapsedTime: 312.8 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data chromstaR ### ############################################################################## ############################################################################## * checking for file ‘chromstaR/DESCRIPTION’ ... OK * preparing ‘chromstaR’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘chromstaR.Rnw’ using knitr 2024-05-29 16:19:11.939 R[35581:1965284974] XType: com.apple.fonts is not accessible. 2024-05-29 16:19:11.939 R[35581:1965284974] XType: XTFontStaticRegistry is enabled. 2024-05-29 16:19:11.981 R[35579:1965284957] XType: com.apple.fonts is not accessible. 2024-05-29 16:19:11.981 R[35579:1965284957] XType: XTFontStaticRegistry is enabled. 2024-05-29 16:19:12.016 R[35582:1965284975] XType: com.apple.fonts is not accessible. 2024-05-29 16:19:12.016 R[35582:1965284975] XType: XTFontStaticRegistry is enabled. 2024-05-29 16:19:48.127 R[38938:1965291564] XType: com.apple.fonts is not accessible. 2024-05-29 16:19:48.127 R[38938:1965291564] XType: XTFontStaticRegistry is enabled. 2024-05-29 16:19:48.132 R[38935:1965291538] XType: com.apple.fonts is not accessible. 2024-05-29 16:19:48.132 R[38935:1965291538] XType: XTFontStaticRegistry is enabled. 2024-05-29 16:19:48.556 R[38937:1965291567] XType: com.apple.fonts is not accessible. 2024-05-29 16:19:48.556 R[38937:1965291567] XType: XTFontStaticRegistry is enabled. 2024-05-29 16:19:49.112 R[38936:1965291546] XType: com.apple.fonts is not accessible. 2024-05-29 16:19:49.112 R[38936:1965291546] XType: XTFontStaticRegistry is enabled. 2024-05-29 16:21:13.428 R[44959:1965304634] XType: com.apple.fonts is not accessible. 2024-05-29 16:21:13.428 R[44959:1965304634] XType: XTFontStaticRegistry is enabled. 2024-05-29 16:21:13.504 R[44956:1965304635] XType: com.apple.fonts is not accessible. 2024-05-29 16:21:13.505 R[44956:1965304635] XType: XTFontStaticRegistry is enabled. 2024-05-29 16:21:13.561 R[44957:1965304629] XType: com.apple.fonts is not accessible. 2024-05-29 16:21:13.561 R[44957:1965304629] XType: XTFontStaticRegistry is enabled. 2024-05-29 16:21:13.586 R[44958:1965304633] XType: com.apple.fonts is not accessible. 2024-05-29 16:21:13.586 R[44958:1965304633] XType: XTFontStaticRegistry is enabled. Error: processing vignette 'chromstaR.Rnw' failed with diagnostics: Running 'texi2dvi' on 'chromstaR.tex' failed. LaTeX errors: ! Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H <return> for immediate help. ... ! Emergency stop. ... l.70 ...}{rgb}{0.941, 0.941, 0.941}\color{fgcolor} \begin{kframe} ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘chromstaR.Rnw’ SUMMARY: processing the following file failed: ‘chromstaR.Rnw’ Error: Vignette re-building failed. Execution halted