Pierrick Roger
| Snapshot Date: 2024-06-26 14:00 -0400 (Wed, 26 Jun 2024) |
| git_url: https://git.bioconductor.org/packages/biodbChebi |
| git_branch: RELEASE_3_19 |
| git_last_commit: fad38a4 |
| git_last_commit_date: 2024-04-30 11:37:31 -0400 (Tue, 30 Apr 2024) |
| Back to Multiple platform build/check report for BioC 3.19: simplified long |
|
This page was generated on 2024-06-28 17:41 -0400 (Fri, 28 Jun 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4760 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.4.0 (2024-04-24 ucrt) -- "Puppy Cup" | 4494 |
| merida1 | macOS 12.7.4 Monterey | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4508 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4466 |
| palomino7 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4362 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 200/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| biodbChebi 1.10.0 (landing page) Pierrick Roger
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.4 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
|
To the developers/maintainers of the biodbChebi package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbChebi.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: biodbChebi |
| Version: 1.10.0 |
| Command: F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:biodbChebi.install-out.txt --library=F:\biocbuild\bbs-3.19-bioc\R\library --no-vignettes --timings biodbChebi_1.10.0.tar.gz |
| StartedAt: 2024-06-26 23:26:33 -0400 (Wed, 26 Jun 2024) |
| EndedAt: 2024-06-26 23:32:12 -0400 (Wed, 26 Jun 2024) |
| EllapsedTime: 338.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: biodbChebi.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:biodbChebi.install-out.txt --library=F:\biocbuild\bbs-3.19-bioc\R\library --no-vignettes --timings biodbChebi_1.10.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'F:/biocbuild/bbs-3.19-bioc/meat/biodbChebi.Rcheck'
* using R version 4.4.0 (2024-04-24 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
gcc.exe (GCC) 13.2.0
GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'biodbChebi/DESCRIPTION' ... OK
* this is package 'biodbChebi' version '1.10.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'biodbChebi' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
ChebiConn 4.89 2.75 203.39
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
biodbChebi.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD INSTALL biodbChebi ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.19-bioc/R/library' * installing *source* package 'biodbChebi' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (biodbChebi)
biodbChebi.Rcheck/tests/testthat.Rout
R version 4.4.0 (2024-04-24 ucrt) -- "Puppy Cup"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbChebi)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbChebi")
biodb.INFO [2024-06-26 23:30:55.700][biodb::testContext]
biodb.INFO [2024-06-26 23:30:55.705][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-26 23:30:55.708][biodb::testContext] Test context - Generic tests
biodb.INFO [2024-06-26 23:30:55.710][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-26 23:30:55.712][biodb::testContext]
biodb.INFO [2024-06-26 23:30:55.724][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.12.0.
biodb.DEBUG[2024-06-26 23:30:55.727][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.19-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-06-26 23:30:55.737][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-26 23:30:55.738][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-06-26 23:30:55.740][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-06-26 23:30:55.741][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:30:55.743][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:30:55.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:30:55.755][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-06-26 23:30:55.800][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-06-26 23:30:55.802][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:30:55.804][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:30:55.806][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:30:55.808][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-06-26 23:30:55.810][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-06-26 23:30:55.812][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:30:55.813][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:30:55.815][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:30:55.817][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-06-26 23:30:55.818][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-06-26 23:30:55.819][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-06-26 23:30:55.821][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:30:55.822][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:30:55.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:30:55.825][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-06-26 23:30:55.826][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-06-26 23:30:55.827][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-06-26 23:30:55.828][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:30:55.830][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:30:55.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:30:55.832][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-06-26 23:30:55.834][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-06-26 23:30:55.835][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:30:55.836][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:30:55.837][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:30:55.839][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-06-26 23:30:55.840][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-06-26 23:30:55.842][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-06-26 23:30:55.843][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:30:55.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:30:55.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:30:55.848][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-06-26 23:30:55.850][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-06-26 23:30:55.851][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:30:55.853][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:30:55.855][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:30:55.856][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-06-26 23:30:55.858][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-06-26 23:30:55.860][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-06-26 23:30:55.862][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:30:55.864][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:30:55.865][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:30:55.868][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-06-26 23:30:55.870][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-06-26 23:30:55.872][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-06-26 23:30:55.874][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-06-26 23:30:55.876][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-06-26 23:30:55.878][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-06-26 23:30:55.879][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:30:55.881][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:30:55.882][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:30:55.883][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-06-26 23:30:55.884][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-06-26 23:30:55.885][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:30:55.886][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:30:55.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:30:55.889][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-06-26 23:30:55.890][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-06-26 23:30:55.891][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:30:55.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:30:55.894][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:30:55.895][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-06-26 23:30:55.896][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-06-26 23:30:55.897][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:30:55.899][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:30:55.900][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:30:55.901][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-06-26 23:30:55.902][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-06-26 23:30:55.903][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:30:55.904][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:30:55.906][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:30:55.907][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-06-26 23:30:55.908][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-06-26 23:30:55.909][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:30:55.910][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:30:55.911][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:30:55.913][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-06-26 23:30:55.914][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-06-26 23:30:55.918][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-06-26 23:30:55.919][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:30:55.921][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:30:55.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:30:55.923][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-06-26 23:30:55.924][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-06-26 23:30:55.926][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-06-26 23:30:55.927][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:30:55.928][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:30:55.929][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:30:55.933][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-06-26 23:30:55.962][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-26 23:30:55.977][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-06-26 23:30:55.978][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-26 23:30:55.979][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-26 23:30:55.981][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-26 23:30:55.982][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-26 23:30:55.983][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-26 23:30:55.985][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-26 23:30:55.986][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-06-26 23:30:55.987][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-26 23:30:55.988][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-26 23:30:55.989][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-06-26 23:30:55.991][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-26 23:30:55.992][self$setPropertyValue]
biodb.DEBUG[2024-06-26 23:30:55.993][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-26 23:30:55.994][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-26 23:30:55.994][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-26 23:30:55.994][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-26 23:30:55.994][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-06-26 23:30:55.994][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-06-26 23:30:55.996][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-26 23:30:55.997][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-26 23:30:55.998][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-26 23:30:56.000][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-26 23:30:56.006][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-26 23:30:56.008][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-26 23:30:56.009][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-26 23:30:56.010][self$setPropertyValue]
biodb.DEBUG[2024-06-26 23:30:56.011][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-26 23:30:56.013][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-26 23:30:56.014][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-26 23:30:56.015][self$setPropertyValue]
biodb.DEBUG[2024-06-26 23:30:56.016][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-06-26 23:30:56.018][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-26 23:30:56.020][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-06-26 23:30:56.021][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-26 23:30:56.022][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-26 23:30:56.023][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-26 23:30:56.025][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-26 23:30:56.026][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-26 23:30:56.027][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-26 23:30:56.028][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-06-26 23:30:56.030][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-26 23:30:56.031][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-26 23:30:56.032][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-06-26 23:30:56.033][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-26 23:30:56.035][self$setPropertyValue]
biodb.DEBUG[2024-06-26 23:30:56.037][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-26 23:30:56.039][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-26 23:30:56.039][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-26 23:30:56.039][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-26 23:30:56.039][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-06-26 23:30:56.039][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-06-26 23:30:56.041][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-26 23:30:56.043][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-26 23:30:56.046][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-26 23:30:56.048][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-26 23:30:56.051][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-26 23:30:56.053][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-26 23:30:56.055][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-26 23:30:56.057][self$setPropertyValue]
biodb.DEBUG[2024-06-26 23:30:56.059][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-26 23:30:56.061][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-26 23:30:56.064][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-26 23:30:56.066][self$setPropertyValue]
biodb.DEBUG[2024-06-26 23:30:56.069][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-06-26 23:30:56.073][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-26 23:30:56.075][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-06-26 23:30:56.077][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-26 23:30:56.079][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-26 23:30:56.081][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-26 23:30:56.083][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-26 23:30:56.085][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-26 23:30:56.087][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-26 23:30:56.089][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-06-26 23:30:56.091][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-26 23:30:56.094][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-06-26 23:30:56.095][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-06-26 23:30:56.098][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-26 23:30:56.099][self$setPropertyValue]
biodb.DEBUG[2024-06-26 23:30:56.101][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-26 23:30:56.103][self$setPropertyValue]
biodb.DEBUG[2024-06-26 23:30:56.106][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-26 23:30:56.107][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-26 23:30:56.109][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-26 23:30:56.111][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-26 23:30:56.113][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-26 23:30:56.115][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-26 23:30:56.117][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-26 23:30:56.119][self$setPropertyValue]
biodb.DEBUG[2024-06-26 23:30:56.121][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-26 23:30:56.123][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-26 23:30:56.125][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-26 23:30:56.127][self$setPropertyValue]
biodb.DEBUG[2024-06-26 23:30:56.129][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-06-26 23:30:56.132][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-26 23:30:56.135][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-06-26 23:30:56.137][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-26 23:30:56.139][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-26 23:30:56.141][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-26 23:30:56.143][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-26 23:30:56.145][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-26 23:30:56.147][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-26 23:30:56.149][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-06-26 23:30:56.151][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-26 23:30:56.153][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-06-26 23:30:56.155][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-06-26 23:30:56.157][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-26 23:30:56.159][self$setPropertyValue]
biodb.DEBUG[2024-06-26 23:30:56.161][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-26 23:30:56.163][self$setPropertyValue]
biodb.DEBUG[2024-06-26 23:30:56.165][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-26 23:30:56.167][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-26 23:30:56.169][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-26 23:30:56.171][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-26 23:30:56.173][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-26 23:30:56.175][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-26 23:30:56.177][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-26 23:30:56.179][self$setPropertyValue]
biodb.DEBUG[2024-06-26 23:30:56.181][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-26 23:30:56.182][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-26 23:30:56.184][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-26 23:30:56.191][self$setPropertyValue]
biodb.DEBUG[2024-06-26 23:30:56.197][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-26 23:30:56.199][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:30:56.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:30:56.203][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:30:56.204][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:30:56.205][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:30:56.206][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:30:56.208][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:30:56.209][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:30:56.210][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:30:56.211][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:30:56.212][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:30:56.213][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:30:56.214][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:30:56.215][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:30:56.217][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:30:56.218][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:30:56.219][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:30:56.220][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:30:56.221][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:30:56.222][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:30:56.224][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:30:56.225][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:30:56.226][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:30:56.227][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:30:56.228][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:30:56.229][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:30:56.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:30:56.232][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:30:56.233][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:30:56.234][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:30:56.236][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:30:56.237][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:30:56.238][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:30:56.239][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:30:56.240][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:30:56.241][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:30:56.243][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:30:56.244][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:30:56.245][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:30:56.246][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:30:56.247][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:30:56.252][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:30:56.253][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:30:56.254][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:30:56.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:30:56.257][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:30:56.258][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:30:56.259][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:30:56.260][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:30:56.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:30:56.262][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:30:56.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:30:56.265][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:30:56.266][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:30:56.267][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:30:56.268][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:30:56.269][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:30:56.270][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:30:56.271][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:30:56.273][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:30:56.275][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:30:56.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:30:56.277][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:30:56.278][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:30:56.280][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:30:56.281][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:30:56.282][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:30:56.283][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:30:56.284][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:30:56.285][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:30:56.286][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:30:56.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:30:56.289][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:30:56.290][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:30:56.292][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:30:56.293][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:30:56.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:30:56.295][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:30:56.296][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:30:56.298][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:30:56.299][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:30:56.300][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:30:56.301][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:30:56.303][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:30:56.304][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:30:56.305][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:30:56.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:30:56.313][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-06-26 23:30:56.317][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-06-26 23:30:56.320][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-06-26 23:30:56.321][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-06-26 23:30:56.323][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-06-26 23:30:56.325][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-06-26 23:30:56.327][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-06-26 23:30:56.328][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-06-26 23:30:56.330][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-06-26 23:30:56.331][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-06-26 23:30:56.333][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-06-26 23:30:56.334][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-06-26 23:30:56.336][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-06-26 23:30:56.338][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-06-26 23:30:56.339][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-06-26 23:30:56.341][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-06-26 23:30:56.343][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-06-26 23:30:56.346][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-06-26 23:30:56.348][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-06-26 23:30:56.351][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-06-26 23:30:56.353][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-06-26 23:30:56.356][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-06-26 23:30:56.358][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-06-26 23:30:56.359][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-06-26 23:30:56.361][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-06-26 23:30:56.363][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-06-26 23:30:56.364][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-06-26 23:30:56.366][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-06-26 23:30:56.367][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-06-26 23:30:56.370][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-06-26 23:30:56.373][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-06-26 23:30:56.375][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-06-26 23:30:56.378][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-06-26 23:30:56.380][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-06-26 23:30:56.383][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-06-26 23:30:56.384][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-06-26 23:30:56.386][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-06-26 23:30:56.387][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-06-26 23:30:56.389][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-06-26 23:30:56.391][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-06-26 23:30:56.392][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-06-26 23:30:56.394][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-06-26 23:30:56.397][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-06-26 23:30:56.399][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-06-26 23:30:56.402][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-06-26 23:30:56.405][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-06-26 23:30:56.407][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-06-26 23:30:56.410][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-06-26 23:30:56.412][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-06-26 23:30:56.414][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-06-26 23:30:56.415][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-06-26 23:30:56.417][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-06-26 23:30:56.419][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-06-26 23:30:56.420][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-06-26 23:30:56.422][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-06-26 23:30:56.424][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-06-26 23:30:56.425][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-06-26 23:30:56.427][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-06-26 23:30:56.429][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-06-26 23:30:56.430][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-06-26 23:30:56.432][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-06-26 23:30:56.433][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-06-26 23:30:56.435][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-06-26 23:30:56.437][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-06-26 23:30:56.439][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-06-26 23:30:56.440][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-06-26 23:30:56.442][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-06-26 23:30:56.444][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-06-26 23:30:56.445][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-06-26 23:30:56.447][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-06-26 23:30:56.449][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-06-26 23:30:56.450][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-06-26 23:30:56.452][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-06-26 23:30:56.454][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-06-26 23:30:56.455][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-06-26 23:30:56.457][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-06-26 23:30:56.459][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-06-26 23:30:56.460][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-06-26 23:30:56.462][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-06-26 23:30:56.464][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-06-26 23:30:56.465][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-06-26 23:30:56.467][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-06-26 23:30:56.469][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-06-26 23:30:56.507][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-06-26 23:30:56.509][initialize] This is biodb version 1.12.0.
biodb.DEBUG[2024-06-26 23:30:56.512][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-26 23:30:56.513][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:30:56.515][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:30:56.516][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:30:56.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:30:56.522][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:30:56.523][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:30:56.524][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:30:56.525][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:30:56.527][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:30:56.528][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:30:56.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:30:56.530][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:30:56.531][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:30:56.532][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:30:56.533][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:30:56.535][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:30:56.536][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:30:56.537][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:30:56.538][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:30:56.539][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:30:56.540][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:30:56.541][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:30:56.543][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:30:56.544][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:30:56.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:30:56.546][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:30:56.547][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:30:56.548][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:30:56.549][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:30:56.550][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:30:56.552][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:30:56.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:30:56.555][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:30:56.556][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:30:56.557][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:30:56.559][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:30:56.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:30:56.561][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:30:56.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:30:56.563][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:30:56.573][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:30:56.574][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:30:56.576][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:30:56.578][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:30:56.580][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:30:56.582][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:30:56.584][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:30:56.585][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:30:56.586][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:30:56.587][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:30:56.588][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:30:56.589][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:30:56.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:30:56.592][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:30:56.593][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:30:56.597][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:30:56.599][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:30:56.600][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:30:56.601][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:30:56.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:30:56.603][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:30:56.604][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:30:56.606][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:30:56.607][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:30:56.608][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:30:56.609][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:30:56.610][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:30:56.611][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:30:56.612][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:30:56.613][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:30:56.615][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:30:56.616][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:30:56.617][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:30:56.618][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:30:56.619][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:30:56.620][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:30:56.621][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:30:56.622][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:30:56.624][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:30:56.625][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:30:56.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:30:56.627][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:30:56.629][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:30:56.630][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:30:56.631][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:30:56.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:30:56.634][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:30:56.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:30:56.636][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:30:56.637][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:30:56.638][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:30:56.640][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:30:56.641][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:30:56.642][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:30:56.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:30:56.645][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:30:56.646][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:30:56.647][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:30:56.648][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:30:56.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:30:56.650][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:30:56.651][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:30:56.652][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:30:56.653][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:30:56.655][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:30:56.656][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:30:56.657][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:30:56.658][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:30:56.659][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:30:56.660][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:30:56.662][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:30:56.663][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:30:56.664][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:30:56.665][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:30:56.666][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:30:56.667][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:30:56.668][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:30:56.669][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:30:56.670][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:30:56.671][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:30:56.673][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:30:56.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:30:56.675][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:30:56.678][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.19-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2024-06-26 23:30:56.687][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2024-06-26 23:30:56.689][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-26 23:30:56.691][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-06-26 23:30:56.692][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-26 23:30:56.694][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-26 23:30:56.695][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-26 23:30:56.696][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-26 23:30:56.697][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-06-26 23:30:56.698][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2024-06-26 23:30:56.700][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-06-26 23:30:56.701][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-26 23:30:56.702][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-26 23:30:56.703][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2024-06-26 23:30:56.705][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-26 23:30:56.706][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-06-26 23:30:56.706][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2024-06-26 23:30:56.706][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-06-26 23:30:56.706][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-06-26 23:30:56.706][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-06-26 23:30:56.706][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2024-06-26 23:30:56.706][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-06-26 23:30:56.706][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-06-26 23:30:56.706][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2024-06-26 23:30:56.706][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2024-06-26 23:30:56.706][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-06-26 23:30:56.708][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-06-26 23:30:56.709][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-26 23:30:56.709][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-26 23:30:56.709][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-26 23:30:56.710][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-06-26 23:30:56.711][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-26 23:30:56.713][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-26 23:30:56.714][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-26 23:30:56.715][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-26 23:30:56.716][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-26 23:30:56.717][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-26 23:30:56.719][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-26 23:30:56.719][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2024-06-26 23:30:56.720][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-26 23:30:56.721][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-26 23:30:56.722][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-06-26 23:30:56.723][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2024-06-26 23:30:56.723][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2024-06-26 23:30:56.729][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-06-26 23:30:56.731][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-06-26 23:30:56.733][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2024-06-26 23:30:56.735][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-06-26 23:30:56.737][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-06-26 23:30:56.739][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-06-26 23:30:56.761][super$initialize] Initialize connector chebi.
biodb.DEBUG[2024-06-26 23:30:56.762][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2024-06-26 23:30:56.766][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2024-06-26 23:30:56.770][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2024-06-26 23:30:56.774][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-26 23:30:56.776][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-26 23:30:56.777][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2024-06-26 23:30:56.779][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2024-06-26 23:30:56.789][biodb::testThat]
biodb.INFO [2024-06-26 23:30:56.790][biodb::testThat] Running test function test.entry.fields (" Entry fields have a correct value ").
biodb.INFO [2024-06-26 23:30:56.792][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-26 23:30:56.793][biodb::testThat]
biodb.TRACE[2024-06-26 23:30:57.357][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.19-bioc/R/library/biodbChebi/testref/entry-chebi-15440-content.xml".
biodb.DEBUG[2024-06-26 23:30:57.360][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-26 23:30:57.364][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-26 23:30:57.372][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:30:57.374][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:30:57.375][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:30:57.413][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:30:57.415][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:30:57.417][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:30:57.418][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:30:57.426][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:30:57.428][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:30:57.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:57.431][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:57.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:30:57.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:30:57.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:57.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:57.449][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-26 23:30:57.451][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-26 23:30:57.452][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:57.453][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:57.478][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-26 23:30:57.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-26 23:30:57.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:57.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:57.486][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 23:30:57.488][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 23:30:57.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:57.492][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:57.495][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 23:30:57.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 23:30:57.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:57.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:57.503][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 23:30:57.505][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 23:30:57.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:57.507][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:57.509][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 23:30:57.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 23:30:57.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:57.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:57.514][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 23:30:57.515][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 23:30:57.516][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:57.518][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:57.519][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 23:30:57.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 23:30:57.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:57.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:57.524][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:30:57.526][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:30:57.527][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:57.528][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:57.530][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:30:57.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:30:57.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:57.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:57.535][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-26 23:30:57.537][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:30:57.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:57.539][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:57.541][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-26 23:30:57.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:30:57.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:57.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:57.546][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:30:57.547][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:30:57.548][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:57.549][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:57.551][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:30:57.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:30:57.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:57.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:57.556][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:30:57.558][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:30:57.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:57.560][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:57.562][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:30:57.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:30:57.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:57.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:57.607][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-26 23:30:57.609][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-26 23:30:57.610][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:57.611][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:57.613][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-26 23:30:57.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-26 23:30:57.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:57.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:57.618][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 23:30:57.620][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 23:30:57.621][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:57.622][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:57.624][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 23:30:57.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 23:30:57.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:57.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:57.632][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:30:57.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:30:57.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:57.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:57.641][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:30:57.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:30:57.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:57.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:57.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:30:57.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:30:57.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:57.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:57.656][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:30:57.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:30:57.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:57.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:57.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:30:57.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:30:57.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:57.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:57.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:30:57.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:30:57.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:57.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:57.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:30:57.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:30:57.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:57.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:57.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:30:57.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:30:57.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:57.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:57.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:30:57.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:30:57.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:57.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:57.724][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:30:57.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:30:57.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:57.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:30:57.729][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440.
biodb.TRACE[2024-06-26 23:30:57.733][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 23:30:57.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 23:30:57.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:57.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:57.741][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 23:30:57.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 23:30:57.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:57.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:57.781][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 23:30:57.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 23:30:57.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:57.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:57.787][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 23:30:57.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 23:30:57.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:57.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:57.793][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:30:57.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:30:57.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:57.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:57.798][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:30:57.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:30:57.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:57.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:57.804][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-26 23:30:57.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-26 23:30:57.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:57.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:57.812][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-26 23:30:57.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-26 23:30:57.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:57.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:57.820][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-26 23:30:57.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-26 23:30:57.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:57.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:57.828][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-26 23:30:57.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-26 23:30:57.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:57.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:57.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:30:57.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:30:57.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:57.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:57.894][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:30:57.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:30:57.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:57.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:57.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:30:57.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:30:57.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:57.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:57.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:30:57.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:30:57.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:57.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:57.916][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:30:57.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:30:57.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:57.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:57.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:30:57.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:30:57.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:57.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:57.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:30:57.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:30:57.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:57.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:57.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:30:57.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:30:57.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:57.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:57.938][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:30:57.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:30:57.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:57.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:57.943][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:30:57.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:30:57.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:57.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:57.948][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:30:57.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:30:57.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:57.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:57.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:30:58.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:30:58.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:58.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:30:58.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:30:58.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:58.015][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:30:58.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:30:58.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:58.023][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:30:58.025][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:30:58.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.029][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:58.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:30:58.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:30:58.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:58.064][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:30:58.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:30:58.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:58.070][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:30:58.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:30:58.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:58.075][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:30:58.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:30:58.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:58.084][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:30:58.085][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:30:58.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.087][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:58.089][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:30:58.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:30:58.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:58.117][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:30:58.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:30:58.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:58.123][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:30:58.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:30:58.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:58.128][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:30:58.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:30:58.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:58.134][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:30:58.135][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:30:58.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.137][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:58.139][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:30:58.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:30:58.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:58.156][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 23:30:58.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 23:30:58.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:58.161][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 23:30:58.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 23:30:58.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:58.166][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 23:30:58.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 23:30:58.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:58.171][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 23:30:58.173][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 23:30:58.174][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.175][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:58.176][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 23:30:58.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 23:30:58.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:58.204][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:30:58.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:30:58.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:58.210][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:30:58.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:30:58.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:58.214][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:30:58.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:30:58.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:58.219][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:30:58.221][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:30:58.222][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.223][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:58.224][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:30:58.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:30:58.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:58.251][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:30:58.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:30:58.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:58.257][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:30:58.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:30:58.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:58.262][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:30:58.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:30:58.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:58.270][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:30:58.272][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:30:58.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.275][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:58.276][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:30:58.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:30:58.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:58.307][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-26 23:30:58.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-26 23:30:58.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:58.318][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-26 23:30:58.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-26 23:30:58.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:58.323][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-26 23:30:58.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-26 23:30:58.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:58.328][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-26 23:30:58.330][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-26 23:30:58.331][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.332][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:58.334][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-26 23:30:58.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-26 23:30:58.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:58.359][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-26 23:30:58.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-26 23:30:58.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:58.368][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-26 23:30:58.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-26 23:30:58.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:58.374][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-26 23:30:58.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-26 23:30:58.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:58.382][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-26 23:30:58.384][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-26 23:30:58.386][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.387][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:58.388][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-26 23:30:58.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-26 23:30:58.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:58.428][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:30:58.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:30:58.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:58.433][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:30:58.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:30:58.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:58.438][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:30:58.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:30:58.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:58.443][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:30:58.445][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:30:58.447][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.448][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:58.449][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:30:58.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:30:58.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:58.471][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 23:30:58.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 23:30:58.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:58.477][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 23:30:58.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 23:30:58.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:58.482][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 23:30:58.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 23:30:58.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:58.487][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 23:30:58.489][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 23:30:58.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.491][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:58.493][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 23:30:58.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 23:30:58.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:58.558][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 23:30:58.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 23:30:58.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:58.568][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 23:30:58.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 23:30:58.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:58.575][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 23:30:58.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 23:30:58.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:58.580][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 23:30:58.582][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 23:30:58.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.584][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:58.585][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 23:30:58.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 23:30:58.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:58.638][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 23:30:58.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 23:30:58.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:58.648][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 23:30:58.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 23:30:58.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:58.653][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 23:30:58.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 23:30:58.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:58.658][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 23:30:58.660][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 23:30:58.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.662][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:58.663][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 23:30:58.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 23:30:58.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:58.690][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:30:58.692][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:30:58.693][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.694][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:58.710][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-26 23:30:58.712][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-26 23:30:58.713][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.715][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:58.723][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 23:30:58.724][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 23:30:58.725][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.727][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:58.750][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 23:30:58.752][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 23:30:58.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.756][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:58.768][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 23:30:58.770][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 23:30:58.772][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.774][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:58.783][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:30:58.784][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:30:58.786][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.787][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:58.808][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:30:58.810][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:30:58.811][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.812][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:58.820][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:30:58.821][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:30:58.822][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.823][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:58.831][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-06-26 23:30:58.832][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-26 23:30:58.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.835][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:58.846][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:30:58.847][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:30:58.848][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.850][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:58.865][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 23:30:58.866][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 23:30:58.868][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.869][ef$get] fields variable is a list.
biodb.INFO [2024-06-26 23:30:58.892][biodb::testThat]
biodb.INFO [2024-06-26 23:30:58.894][biodb::testThat] Running test function test.rt.unit (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-06-26 23:30:58.895][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-26 23:30:58.896][biodb::testThat]
biodb.DEBUG[2024-06-26 23:30:58.911][private$loadEntries] Creating entries from ids [1]: "15440".
biodb.DEBUG[2024-06-26 23:30:58.919][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-26 23:30:58.926][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15440".
biodb.TRACE[2024-06-26 23:30:58.928][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-26 23:30:58.930][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15440.xml".
biodb.DEBUG[2024-06-26 23:30:58.938][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-26 23:30:58.961][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-26 23:30:58.964][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-26 23:30:58.966][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:30:58.967][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:30:58.968][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:30:58.976][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:30:58.977][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:30:58.978][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:30:58.980][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:30:58.983][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:30:58.984][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:30:58.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.987][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:58.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:30:58.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:30:58.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:58.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:59.010][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-26 23:30:59.012][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-26 23:30:59.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:59.014][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:59.016][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-26 23:30:59.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-26 23:30:59.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:59.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:59.022][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 23:30:59.024][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 23:30:59.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:59.026][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:59.028][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 23:30:59.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 23:30:59.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:59.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:59.034][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 23:30:59.036][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 23:30:59.038][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:59.039][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:59.041][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 23:30:59.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 23:30:59.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:59.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:59.046][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 23:30:59.048][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 23:30:59.049][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:59.050][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:59.052][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 23:30:59.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 23:30:59.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:59.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:59.057][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:30:59.059][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:30:59.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:59.061][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:59.063][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:30:59.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:30:59.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:59.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:59.069][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-26 23:30:59.070][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:30:59.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:59.072][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:59.074][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-26 23:30:59.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:30:59.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:59.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:59.080][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:30:59.081][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:30:59.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:59.083][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:59.088][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:30:59.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:30:59.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:59.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:59.096][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:30:59.098][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:30:59.104][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:59.105][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:59.107][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:30:59.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:30:59.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:59.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:59.112][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-26 23:30:59.114][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-26 23:30:59.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:59.116][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:59.118][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-26 23:30:59.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-26 23:30:59.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:59.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:59.123][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 23:30:59.125][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 23:30:59.126][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:59.127][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:59.129][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 23:30:59.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 23:30:59.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:59.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:59.134][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:30:59.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:30:59.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:59.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:59.139][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:30:59.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:30:59.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:59.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:59.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:30:59.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:30:59.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:59.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:59.150][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:30:59.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:30:59.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:59.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:59.155][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:30:59.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:30:59.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:59.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:59.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:30:59.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:30:59.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:59.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:59.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:30:59.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:30:59.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:59.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:59.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:30:59.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:30:59.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:59.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:59.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:30:59.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:30:59.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:59.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:59.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:30:59.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:30:59.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:59.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:30:59.188][self$createEntryFromContent] Accession numbers: 15440.
biodb.TRACE[2024-06-26 23:30:59.189][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-06-26 23:30:59.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-06-26 23:30:59.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:59.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:59.194][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-06-26 23:30:59.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-06-26 23:30:59.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:59.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:59.199][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-06-26 23:30:59.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-06-26 23:30:59.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:59.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-06-26 23:30:59.226][biodb::testThat]
biodb.INFO [2024-06-26 23:30:59.227][biodb::testThat] Running test function test.searchForEntries (" We can search for an entry by searchable field ").
biodb.INFO [2024-06-26 23:30:59.229][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-26 23:30:59.230][biodb::testThat]
biodb.TRACE[2024-06-26 23:30:59.235][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:30:59.237][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:30:59.238][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:59.239][ef$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:30:59.241][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name".
biodb.TRACE[2024-06-26 23:30:59.298][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:30:59.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:30:59.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:59.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:59.303][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:30:59.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:30:59.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:59.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:30:59.309][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:30:59.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:30:59.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:30:59.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:30:59.322][function(conn, opt)] With value "squalene".
biodb.DEBUG[2024-06-26 23:30:59.327][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2024-06-26 23:30:59.347][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-26 23:30:59.362][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2024-06-26 23:30:59.364][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-26 23:30:59.367][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2024-06-26 23:30:59.390][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-26 23:30:59.395][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-26 23:30:59.396][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-26 23:30:59.398][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL%20NAMES&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-06-26 23:31:00.099][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL%20NAMES&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-06-26 23:31:00.612][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-26 23:31:00.616][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content"
biodb.TRACE[2024-06-26 23:31:00.641][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.request"
biodb.DEBUG[2024-06-26 23:31:00.647][function(conn, opt)] With found IDs [1]: "15440".
biodb.TRACE[2024-06-26 23:31:00.708][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:00.710][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:00.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:00.713][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:00.714][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:00.715][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:00.716][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:00.718][ef$get] fields variable is a list.
biodb.INFO [2024-06-26 23:31:00.748][biodb::testThat]
biodb.INFO [2024-06-26 23:31:00.750][biodb::testThat] Running test function test.searchByName (" We can search for an entry by name. ").
biodb.INFO [2024-06-26 23:31:00.751][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-26 23:31:00.752][biodb::testThat]
biodb.TRACE[2024-06-26 23:31:00.814][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:31:00.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:31:00.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:00.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:00.821][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:31:00.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:31:00.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:00.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:00.831][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:31:00.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:31:00.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:00.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:00.920][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-26 23:31:00.924][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-26 23:31:00.926][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-06-26 23:31:00.928][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-26 23:31:00.930][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.INFO [2024-06-26 23:31:01.003][biodb::testThat]
biodb.INFO [2024-06-26 23:31:01.006][biodb::testThat] Running test function testEntryLoading (" We can load an entry from the database. ").
biodb.INFO [2024-06-26 23:31:01.008][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-26 23:31:01.010][biodb::testThat]
biodb.TRACE[2024-06-26 23:31:01.043][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 23:31:01.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 23:31:01.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:01.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:01.049][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 23:31:01.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 23:31:01.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:01.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:01.054][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 23:31:01.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 23:31:01.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:01.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:01.060][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 23:31:01.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 23:31:01.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:01.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:01.066][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:01.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:01.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:01.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:01.072][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:01.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:01.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:01.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:01.079][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-26 23:31:01.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-26 23:31:01.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:01.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:01.087][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-26 23:31:01.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-26 23:31:01.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:01.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:01.096][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-26 23:31:01.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-26 23:31:01.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:01.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:01.104][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-26 23:31:01.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-26 23:31:01.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:01.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:01.150][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 23:31:01.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 23:31:01.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:01.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:01.159][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 23:31:01.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 23:31:01.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:01.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:01.168][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 23:31:01.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 23:31:01.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:01.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:01.177][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 23:31:01.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 23:31:01.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:01.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:01.185][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:01.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:01.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:01.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:01.193][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:01.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:01.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:01.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:01.204][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-26 23:31:01.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-26 23:31:01.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:01.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:01.214][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-26 23:31:01.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-26 23:31:01.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:01.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:01.223][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-26 23:31:01.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-26 23:31:01.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:01.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:01.231][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-26 23:31:01.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-26 23:31:01.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:01.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-06-26 23:31:01.298][biodb::testThat]
biodb.INFO [2024-06-26 23:31:01.299][biodb::testThat] Running test function test.entry.page.url (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-06-26 23:31:01.300][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-26 23:31:01.302][biodb::testThat]
biodb.INFO [2024-06-26 23:31:01.333][biodb::testThat]
biodb.INFO [2024-06-26 23:31:01.335][biodb::testThat] Running test function test.entry.image.url (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-06-26 23:31:01.338][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-26 23:31:01.339][biodb::testThat]
biodb.INFO [2024-06-26 23:31:01.358][biodb::testThat]
biodb.INFO [2024-06-26 23:31:01.360][biodb::testThat] Running test function test.entry.page.url.download (" The entry page URL can be downloaded. ").
biodb.INFO [2024-06-26 23:31:01.362][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-26 23:31:01.363][biodb::testThat]
biodb.DEBUG[2024-06-26 23:31:01.368][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440".
biodb.DEBUG[2024-06-26 23:31:01.873][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440.
biodb.INFO [2024-06-26 23:31:03.202][biodb::testThat]
biodb.INFO [2024-06-26 23:31:03.204][biodb::testThat] Running test function test.entry.image.url.download (" The entry image URL can be downloaded. ").
biodb.INFO [2024-06-26 23:31:03.206][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-26 23:31:03.212][biodb::testThat]
biodb.DEBUG[2024-06-26 23:31:03.603][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/displayImage.do?defaultImage=true&imageIndex=0&chebiId=15440&dimensions=400.
biodb.TRACE[2024-06-26 23:31:04.065][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:31:04.067][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:31:04.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:04.072][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:04.074][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:04.077][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:04.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:04.081][ef$get] fields variable is a list.
biodb.INFO [2024-06-26 23:31:04.085][biodb::testThat]
biodb.INFO [2024-06-26 23:31:04.087][biodb::testThat] Running test function test.searchCompound (" We can search for a compound ").
biodb.INFO [2024-06-26 23:31:04.089][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-26 23:31:04.091][biodb::testThat]
biodb.TRACE[2024-06-26 23:31:04.216][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:31:04.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:31:04.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:04.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:04.227][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:31:04.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:31:04.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:04.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:04.233][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:31:04.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:31:04.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:04.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:04.365][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-26 23:31:04.370][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-26 23:31:04.373][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-06-26 23:31:04.376][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-26 23:31:04.379][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-06-26 23:31:04.489][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-26 23:31:04.495][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-26 23:31:04.498][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-06-26 23:31:04.501][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-26 23:31:04.504][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.TRACE[2024-06-26 23:31:04.544][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-26 23:31:04.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-26 23:31:04.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:04.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:04.558][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:04.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:04.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:04.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:04.564][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:04.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:04.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:04.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:04.571][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:04.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:04.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:04.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:04.579][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:04.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:04.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:04.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:04.587][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:04.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:04.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:04.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:04.604][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-26 23:31:04.624][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-26 23:31:04.626][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-26 23:31:04.652][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-06-26 23:31:05.006][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-06-26 23:31:05.356][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-26 23:31:05.360][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content"
biodb.TRACE[2024-06-26 23:31:05.369][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.request"
biodb.DEBUG[2024-06-26 23:31:05.374][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:05.375][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:05.377][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:05.412][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:05.414][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:05.416][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:05.418][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:05.420][private$loadEntries] Creating entries from ids [1]: "192288".
biodb.DEBUG[2024-06-26 23:31:05.491][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-26 23:31:05.501][cch$loadFileContent] Trying to load 1 files from cache: [1]: "192288".
biodb.TRACE[2024-06-26 23:31:05.506][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-26 23:31:05.509][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-26 23:31:05.511][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-26 23:31:05.513][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-26 23:31:05.515][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-26 23:31:05.518][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-26 23:31:05.522][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:05.524][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:05.526][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:05.582][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:05.584][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:05.586][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:05.588][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:05.591][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=192288".
biodb.DEBUG[2024-06-26 23:31:05.596][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-26 23:31:05.598][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-26 23:31:05.601][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=192288".
biodb.TRACE[2024-06-26 23:31:05.959][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=192288).
biodb.DEBUG[2024-06-26 23:31:06.318][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-26 23:31:06.323][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7e76f7a384ab933ed01801c92c3eec77.content"
biodb.TRACE[2024-06-26 23:31:06.330][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7e76f7a384ab933ed01801c92c3eec77.request"
biodb.TRACE[2024-06-26 23:31:06.337][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/192288.xml"
biodb.DEBUG[2024-06-26 23:31:06.341][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-26 23:31:06.343][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-26 23:31:06.346][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-26 23:31:06.349][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:06.351][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:06.353][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:06.364][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:06.366][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:06.368][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:06.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:06.374][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:06.376][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:06.378][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:06.380][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:06.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:06.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:06.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:06.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:06.391][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-26 23:31:06.393][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-26 23:31:06.395][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:06.397][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:06.399][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-26 23:31:06.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-26 23:31:06.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:06.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:06.405][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 23:31:06.406][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 23:31:06.408][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:06.410][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:06.413][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 23:31:06.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 23:31:06.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:06.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:06.421][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 23:31:06.423][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 23:31:06.424][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:06.426][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:06.429][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 23:31:06.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 23:31:06.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:06.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:06.437][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 23:31:06.439][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 23:31:06.441][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:06.443][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:06.446][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 23:31:06.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 23:31:06.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:06.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:06.464][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:31:06.466][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:31:06.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:06.469][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:06.472][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-26 23:31:06.474][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:06.476][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:06.478][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:06.480][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-26 23:31:06.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:06.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:06.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:06.489][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:06.491][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:06.493][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:06.495][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:06.497][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:06.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:06.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:06.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:06.506][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:31:06.508][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:31:06.509][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:06.510][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:06.513][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:31:06.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:31:06.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:06.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:06.521][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-26 23:31:06.523][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-26 23:31:06.525][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:06.527][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:06.529][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-26 23:31:06.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-26 23:31:06.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:06.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:06.537][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 23:31:06.540][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 23:31:06.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:06.543][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:06.546][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 23:31:06.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 23:31:06.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:06.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:06.554][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:06.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:06.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:06.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:06.562][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:06.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:06.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:06.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:06.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:06.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:06.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:06.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:06.575][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:06.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:06.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:06.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:06.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:06.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:06.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:06.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:06.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:06.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:06.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:06.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:06.600][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:06.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:06.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:06.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:06.659][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:06.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:06.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:06.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:06.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:06.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:06.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:06.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:06.674][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:06.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:06.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:06.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:06.679][self$createEntryFromContent] Accession numbers: 192288.
biodb.TRACE[2024-06-26 23:31:06.695][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:06.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:06.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:06.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:06.704][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:06.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:06.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:06.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:06.713][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:06.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:06.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:06.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:06.723][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-26 23:31:06.729][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-26 23:31:06.732][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-26 23:31:06.735][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-06-26 23:31:07.084][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-06-26 23:31:07.430][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-26 23:31:07.434][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content"
biodb.TRACE[2024-06-26 23:31:07.439][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.request"
biodb.DEBUG[2024-06-26 23:31:07.461][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:07.463][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:07.464][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:07.532][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:07.533][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:07.535][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:07.537][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:07.540][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:07.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:07.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:07.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:07.550][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:07.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:07.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:07.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:07.559][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:07.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:07.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:07.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:07.565][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:07.566][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:07.567][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:07.575][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:07.577][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:07.578][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:07.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:07.581][private$loadEntries] Creating entries from ids [1]: "209892".
biodb.DEBUG[2024-06-26 23:31:07.582][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-26 23:31:07.584][cch$loadFileContent] Trying to load 1 files from cache: [1]: "209892".
biodb.TRACE[2024-06-26 23:31:07.586][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-26 23:31:07.588][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-26 23:31:07.590][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-26 23:31:07.591][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-26 23:31:07.592][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-26 23:31:07.594][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-26 23:31:07.615][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:07.618][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:07.620][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:07.632][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:07.634][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:07.637][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:07.639][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:07.642][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=209892".
biodb.DEBUG[2024-06-26 23:31:07.647][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-26 23:31:07.650][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-26 23:31:07.653][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=209892".
biodb.TRACE[2024-06-26 23:31:08.011][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=209892).
biodb.DEBUG[2024-06-26 23:31:08.379][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-26 23:31:08.383][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7a3362365076d47cdf0955cccdd37bcf.content"
biodb.TRACE[2024-06-26 23:31:08.390][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7a3362365076d47cdf0955cccdd37bcf.request"
biodb.TRACE[2024-06-26 23:31:08.396][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/209892.xml"
biodb.DEBUG[2024-06-26 23:31:08.400][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-26 23:31:08.403][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-26 23:31:08.406][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-26 23:31:08.408][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:08.410][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:08.412][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:08.422][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:08.424][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:08.425][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:08.427][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:08.432][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:08.434][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:08.436][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:08.438][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:08.441][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:08.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:08.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:08.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:08.449][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-26 23:31:08.452][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-26 23:31:08.454][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:08.456][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:08.458][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-26 23:31:08.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-26 23:31:08.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:08.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:08.467][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 23:31:08.469][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 23:31:08.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:08.473][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:08.475][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 23:31:08.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 23:31:08.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:08.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:08.482][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 23:31:08.484][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 23:31:08.486][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:08.488][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:08.491][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 23:31:08.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 23:31:08.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:08.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:08.498][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 23:31:08.501][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 23:31:08.503][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:08.504][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:08.507][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 23:31:08.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 23:31:08.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:08.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:08.516][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:31:08.518][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:31:08.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:08.522][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:08.524][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-26 23:31:08.527][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:08.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:08.531][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:08.533][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-26 23:31:08.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:08.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:08.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:08.542][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:08.544][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:08.546][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:08.548][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:08.551][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:08.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:08.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:08.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:08.559][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:31:08.561][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:31:08.563][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:08.602][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:08.605][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:31:08.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:31:08.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:08.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:08.614][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-26 23:31:08.617][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-26 23:31:08.619][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:08.620][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:08.622][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-26 23:31:08.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-26 23:31:08.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:08.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:08.629][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 23:31:08.631][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 23:31:08.633][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:08.635][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:08.638][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 23:31:08.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 23:31:08.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:08.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:08.644][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:08.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:08.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:08.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:08.649][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:08.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:08.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:08.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:08.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:08.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:08.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:08.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:08.663][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:08.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:08.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:08.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:08.672][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:08.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:08.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:08.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:08.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:08.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:08.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:08.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:08.690][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:08.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:08.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:08.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:08.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:08.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:08.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:08.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:08.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:08.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:08.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:08.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:08.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:08.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:08.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:08.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:08.725][self$createEntryFromContent] Accession numbers: 209892.
biodb.TRACE[2024-06-26 23:31:08.728][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:08.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:08.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:08.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:08.736][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:08.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:08.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:08.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:08.743][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:08.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:08.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:08.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:08.802][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-26 23:31:08.807][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-26 23:31:08.809][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-06-26 23:31:08.811][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-26 23:31:08.815][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-06-26 23:31:08.820][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:08.822][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:08.824][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:08.840][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:08.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:08.844][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:08.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:08.848][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:08.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:08.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:08.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:08.857][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:08.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:08.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:08.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:08.865][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:08.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:08.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:08.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:08.873][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:08.875][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:08.876][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:08.889][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:08.891][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:08.895][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:08.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:08.900][private$loadEntries] Creating entries from ids [1]: "26747".
biodb.DEBUG[2024-06-26 23:31:08.901][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-26 23:31:08.904][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26747".
biodb.TRACE[2024-06-26 23:31:08.907][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-26 23:31:08.910][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-26 23:31:08.912][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-26 23:31:08.915][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-26 23:31:08.917][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-26 23:31:08.919][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-26 23:31:08.924][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:08.926][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:08.928][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:08.947][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:08.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:08.951][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:08.953][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:08.956][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=26747".
biodb.DEBUG[2024-06-26 23:31:08.961][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-26 23:31:08.963][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-26 23:31:08.965][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=26747".
biodb.TRACE[2024-06-26 23:31:09.342][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=26747).
biodb.DEBUG[2024-06-26 23:31:09.702][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-26 23:31:09.705][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/462a35453014388bd90df1c9e4ade520.content"
biodb.TRACE[2024-06-26 23:31:09.712][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/462a35453014388bd90df1c9e4ade520.request"
biodb.TRACE[2024-06-26 23:31:09.718][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26747.xml"
biodb.DEBUG[2024-06-26 23:31:09.722][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-26 23:31:09.724][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-26 23:31:09.726][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-26 23:31:09.728][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:09.729][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:09.731][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:09.750][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:09.752][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:09.764][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:09.766][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:09.771][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:09.774][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:09.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:09.778][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:09.780][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:09.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:09.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:09.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:09.787][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-26 23:31:09.790][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-26 23:31:09.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:09.794][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:09.796][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 23:31:09.798][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 23:31:09.801][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:09.802][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:09.805][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 23:31:09.807][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 23:31:09.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:09.812][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:09.814][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 23:31:09.816][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 23:31:09.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:09.821][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:09.823][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:31:09.825][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:31:09.828][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:09.830][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:09.832][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-26 23:31:09.835][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:09.837][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:09.839][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:09.841][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:09.844][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:09.846][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:09.848][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:09.850][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:31:09.853][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:31:09.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:09.857][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:09.860][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:31:09.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:31:09.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:09.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:09.869][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-26 23:31:09.871][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-26 23:31:09.873][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:09.875][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:09.878][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-26 23:31:09.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-26 23:31:09.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:09.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:09.887][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 23:31:09.889][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 23:31:09.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:09.893][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:09.896][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:09.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:09.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:09.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:09.904][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:09.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:09.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:09.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:09.912][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:09.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:09.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:09.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:09.921][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:09.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:09.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:09.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:09.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:09.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:09.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:09.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:09.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:09.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:09.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:09.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:09.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:09.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:09.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:09.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:09.956][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:09.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:09.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:09.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:09.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:09.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:09.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:09.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:09.982][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:09.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:09.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:09.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:09.989][self$createEntryFromContent] Accession numbers: 26747.
biodb.TRACE[2024-06-26 23:31:09.991][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:09.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:09.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:09.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:09.999][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:10.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:10.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:10.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:10.008][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:10.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:10.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:10.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:10.017][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:10.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:10.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:10.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:10.023][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:10.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:10.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:10.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:10.031][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:10.033][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:10.034][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:10.073][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:10.076][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:10.078][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:10.080][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:10.083][private$loadEntries] Creating entries from ids [1]: "59285".
biodb.DEBUG[2024-06-26 23:31:10.085][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-26 23:31:10.091][cch$loadFileContent] Trying to load 1 files from cache: [1]: "59285".
biodb.TRACE[2024-06-26 23:31:10.094][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-26 23:31:10.096][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-26 23:31:10.099][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-26 23:31:10.101][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-26 23:31:10.103][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-26 23:31:10.105][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-26 23:31:10.109][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:10.111][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:10.112][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:10.132][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:10.133][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:10.135][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:10.136][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:10.137][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=59285".
biodb.DEBUG[2024-06-26 23:31:10.141][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-26 23:31:10.143][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-26 23:31:10.145][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=59285".
biodb.TRACE[2024-06-26 23:31:10.498][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=59285).
biodb.DEBUG[2024-06-26 23:31:10.858][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-26 23:31:10.863][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a390fa120be311b7c431851d8d66d5ac.content"
biodb.TRACE[2024-06-26 23:31:10.871][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a390fa120be311b7c431851d8d66d5ac.request"
biodb.TRACE[2024-06-26 23:31:10.877][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/59285.xml"
biodb.DEBUG[2024-06-26 23:31:10.881][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-26 23:31:10.883][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-26 23:31:10.886][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-26 23:31:10.889][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:10.890][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:10.891][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:10.924][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:10.927][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:10.929][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:10.931][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:10.934][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:10.935][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:10.937][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:10.938][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:10.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:10.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:10.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:10.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:10.949][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-26 23:31:10.950][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-26 23:31:10.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:10.953][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:10.955][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 23:31:10.957][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 23:31:10.958][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:10.959][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:10.961][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 23:31:10.962][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 23:31:10.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:10.965][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:10.966][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 23:31:10.968][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 23:31:10.969][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:10.970][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:10.972][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:31:10.973][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:31:10.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:10.975][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:10.977][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-26 23:31:10.978][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:10.979][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:10.981][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:10.983][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:10.984][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:10.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:10.987][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:10.988][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:31:10.990][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:31:10.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:10.992][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:10.994][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:31:10.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:31:10.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:10.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:11.000][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-26 23:31:11.001][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-26 23:31:11.002][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:11.004][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:11.005][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-26 23:31:11.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-26 23:31:11.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:11.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:11.011][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 23:31:11.012][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 23:31:11.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:11.015][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:11.018][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:11.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:11.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:11.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:11.025][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:11.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:11.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:11.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:11.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:11.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:11.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:11.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:11.040][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:11.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:11.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:11.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:11.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:11.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:11.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:11.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:11.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:11.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:11.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:11.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:11.057][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:11.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:11.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:11.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:11.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:11.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:11.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:11.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:11.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:11.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:11.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:11.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:11.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:11.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:11.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:11.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:11.091][self$createEntryFromContent] Accession numbers: 59285.
biodb.TRACE[2024-06-26 23:31:11.093][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:11.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:11.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:11.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:11.099][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:11.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:11.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:11.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:11.105][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:11.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:11.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:11.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:11.113][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:11.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:11.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:11.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:11.125][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:11.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:11.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:11.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:11.135][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:11.137][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:11.140][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:11.151][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:11.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:11.157][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:11.159][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:11.162][private$loadEntries] Creating entries from ids [1]: "75174".
biodb.DEBUG[2024-06-26 23:31:11.164][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-26 23:31:11.168][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75174".
biodb.TRACE[2024-06-26 23:31:11.170][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-26 23:31:11.175][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-26 23:31:11.178][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-26 23:31:11.180][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-26 23:31:11.183][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-26 23:31:11.186][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-26 23:31:11.190][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:11.191][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:11.193][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:11.212][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:11.214][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:11.216][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:11.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:11.219][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75174".
biodb.DEBUG[2024-06-26 23:31:11.222][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-26 23:31:11.224][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-26 23:31:11.226][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75174".
biodb.TRACE[2024-06-26 23:31:11.574][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75174).
biodb.DEBUG[2024-06-26 23:31:11.934][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-26 23:31:11.938][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/379ec57940c7734782bc4c07c7e15a9b.content"
biodb.TRACE[2024-06-26 23:31:11.946][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/379ec57940c7734782bc4c07c7e15a9b.request"
biodb.TRACE[2024-06-26 23:31:11.953][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75174.xml"
biodb.DEBUG[2024-06-26 23:31:11.956][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-26 23:31:11.959][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-26 23:31:11.961][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-26 23:31:11.964][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:11.966][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:11.967][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:11.990][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:11.992][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:11.993][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:11.994][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:11.997][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:11.998][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:11.999][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:12.001][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:12.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:12.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:12.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:12.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:12.007][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-26 23:31:12.009][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-26 23:31:12.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:12.011][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:12.013][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 23:31:12.014][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 23:31:12.015][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:12.017][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:12.018][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 23:31:12.020][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 23:31:12.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:12.022][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:12.024][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 23:31:12.025][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 23:31:12.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:12.028][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:12.030][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:31:12.031][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:31:12.033][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:12.034][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:12.036][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-26 23:31:12.037][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:12.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:12.040][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:12.042][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:12.043][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:12.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:12.046][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:12.048][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:31:12.049][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:31:12.050][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:12.051][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:12.053][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:31:12.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:31:12.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:12.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:12.059][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-26 23:31:12.060][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-26 23:31:12.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:12.063][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:12.064][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-26 23:31:12.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-26 23:31:12.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:12.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:12.070][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 23:31:12.071][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 23:31:12.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:12.074][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:12.075][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:12.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:12.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:12.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:12.080][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:12.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:12.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:12.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:12.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:12.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:12.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:12.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:12.090][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:12.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:12.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:12.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:12.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:12.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:12.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:12.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:12.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:12.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:12.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:12.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:12.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:12.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:12.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:12.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:12.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:12.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:12.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:12.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:12.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:12.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:12.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:12.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:12.129][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:12.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:12.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:12.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:12.134][self$createEntryFromContent] Accession numbers: 75174.
biodb.TRACE[2024-06-26 23:31:12.136][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:12.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:12.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:12.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:12.142][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:12.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:12.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:12.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:12.147][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:12.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:12.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:12.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:12.152][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:12.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:12.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:12.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:12.158][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:12.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:12.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:12.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:12.164][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:12.166][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:12.167][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:12.182][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:12.184][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:12.185][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:12.186][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:12.188][private$loadEntries] Creating entries from ids [1]: "15441".
biodb.DEBUG[2024-06-26 23:31:12.189][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-26 23:31:12.191][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15441".
biodb.TRACE[2024-06-26 23:31:12.193][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-26 23:31:12.194][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-26 23:31:12.196][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-26 23:31:12.199][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-26 23:31:12.201][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-26 23:31:12.202][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-26 23:31:12.205][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:12.206][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:12.208][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:12.217][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:12.219][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:12.220][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:12.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:12.222][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15441".
biodb.DEBUG[2024-06-26 23:31:12.226][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-26 23:31:12.227][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-26 23:31:12.229][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15441".
biodb.TRACE[2024-06-26 23:31:12.577][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15441).
biodb.DEBUG[2024-06-26 23:31:12.934][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-26 23:31:12.938][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6d4f93841bd82da498852b3a0a5692d.content"
biodb.TRACE[2024-06-26 23:31:12.946][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6d4f93841bd82da498852b3a0a5692d.request"
biodb.TRACE[2024-06-26 23:31:12.951][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15441.xml"
biodb.DEBUG[2024-06-26 23:31:12.955][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-26 23:31:12.958][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-26 23:31:12.960][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-26 23:31:12.963][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:12.974][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:12.977][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:12.991][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:12.993][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:12.995][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:12.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:13.001][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:13.003][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:13.005][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:13.007][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:13.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:13.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:13.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:13.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:13.017][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-26 23:31:13.019][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-26 23:31:13.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:13.023][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:13.025][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-26 23:31:13.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-26 23:31:13.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:13.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:13.033][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 23:31:13.035][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 23:31:13.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:13.039][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:13.041][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 23:31:13.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 23:31:13.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:13.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:13.049][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 23:31:13.051][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 23:31:13.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:13.055][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:13.057][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 23:31:13.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 23:31:13.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:13.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:13.065][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 23:31:13.067][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 23:31:13.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:13.071][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:13.074][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 23:31:13.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 23:31:13.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:13.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:13.083][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:31:13.086][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:31:13.088][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:13.090][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:13.093][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:31:13.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:31:13.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:13.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:13.103][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-26 23:31:13.105][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:13.108][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:13.110][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:13.113][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-26 23:31:13.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:13.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:13.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:13.121][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:13.123][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:13.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:13.127][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:13.129][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:13.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:13.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:13.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:13.137][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:31:13.139][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:31:13.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:13.143][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:13.146][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:31:13.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:31:13.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:13.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:13.154][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-26 23:31:13.156][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-26 23:31:13.158][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:13.160][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:13.163][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-26 23:31:13.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-26 23:31:13.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:13.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:13.180][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 23:31:13.182][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 23:31:13.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:13.186][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:13.188][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 23:31:13.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 23:31:13.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:13.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:13.197][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:13.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:13.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:13.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:13.205][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:13.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:13.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:13.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:13.213][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:13.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:13.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:13.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:13.221][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:13.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:13.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:13.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:13.229][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:13.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:13.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:13.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:13.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:13.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:13.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:13.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:13.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:13.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:13.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:13.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:13.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:13.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:13.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:13.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:13.262][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:13.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:13.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:13.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:13.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:13.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:13.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:13.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:13.278][self$createEntryFromContent] Accession numbers: 15441.
biodb.TRACE[2024-06-26 23:31:13.280][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:13.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:13.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:13.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:13.288][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:13.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:13.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:13.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:13.296][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:13.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:13.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:13.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:13.304][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:13.306][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:13.308][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:13.322][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:13.323][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:13.325][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:13.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:13.327][private$loadEntries] Creating entries from ids [1]: "15442".
biodb.DEBUG[2024-06-26 23:31:13.329][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-26 23:31:13.331][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15442".
biodb.TRACE[2024-06-26 23:31:13.332][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-26 23:31:13.334][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-26 23:31:13.335][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-26 23:31:13.337][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-26 23:31:13.338][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-26 23:31:13.339][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-26 23:31:13.342][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:13.343][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:13.345][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:13.358][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:13.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:13.360][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:13.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:13.363][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15442".
biodb.DEBUG[2024-06-26 23:31:13.367][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-26 23:31:13.368][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-26 23:31:13.370][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15442".
biodb.TRACE[2024-06-26 23:31:13.731][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15442).
biodb.DEBUG[2024-06-26 23:31:14.092][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-26 23:31:14.096][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4c2c678eeeeb53d29ca6f3663ebee297.content"
biodb.TRACE[2024-06-26 23:31:14.103][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4c2c678eeeeb53d29ca6f3663ebee297.request"
biodb.TRACE[2024-06-26 23:31:14.109][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15442.xml"
biodb.DEBUG[2024-06-26 23:31:14.113][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-26 23:31:14.116][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-26 23:31:14.118][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-26 23:31:14.122][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:14.124][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:14.126][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:14.135][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:14.136][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:14.138][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:14.139][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:14.142][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:14.144][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:14.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:14.147][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:14.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:14.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:14.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:14.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:14.153][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-26 23:31:14.155][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-26 23:31:14.160][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:14.161][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:14.163][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-26 23:31:14.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-26 23:31:14.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:14.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:14.172][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 23:31:14.174][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 23:31:14.176][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:14.178][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:14.181][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 23:31:14.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 23:31:14.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:14.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:14.188][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 23:31:14.189][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 23:31:14.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:14.192][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:14.194][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 23:31:14.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 23:31:14.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:14.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:14.200][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 23:31:14.201][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 23:31:14.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:14.204][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:14.207][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 23:31:14.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 23:31:14.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:14.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:14.212][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:31:14.214][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:31:14.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:14.217][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:14.218][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:31:14.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:31:14.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:14.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:14.225][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-26 23:31:14.227][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:14.238][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:14.240][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:14.242][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-26 23:31:14.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:14.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:14.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:14.247][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:14.249][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:14.250][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:14.251][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:14.253][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:14.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:14.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:14.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:14.259][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:31:14.260][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:31:14.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:14.263][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:14.265][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:31:14.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:31:14.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:14.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:14.271][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-26 23:31:14.272][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-26 23:31:14.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:14.275][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:14.277][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-26 23:31:14.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-26 23:31:14.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:14.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:14.282][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 23:31:14.284][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 23:31:14.285][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:14.286][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:14.288][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 23:31:14.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 23:31:14.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:14.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:14.294][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:14.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:14.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:14.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:14.300][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:14.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:14.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:14.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:14.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:14.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:14.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:14.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:14.312][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:14.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:14.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:14.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:14.317][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:14.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:14.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:14.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:14.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:14.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:14.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:14.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:14.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:14.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:14.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:14.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:14.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:14.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:14.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:14.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:14.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:14.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:14.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:14.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:14.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:14.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:14.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:14.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:14.349][self$createEntryFromContent] Accession numbers: 15442.
biodb.TRACE[2024-06-26 23:31:14.350][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:14.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:14.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:14.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:14.355][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:14.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:14.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:14.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:14.368][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:14.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:14.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:14.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:14.374][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:14.375][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:14.376][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:14.391][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:14.393][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:14.394][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:14.395][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:14.397][private$loadEntries] Creating entries from ids [1]: "57310".
biodb.DEBUG[2024-06-26 23:31:14.398][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-26 23:31:14.400][cch$loadFileContent] Trying to load 1 files from cache: [1]: "57310".
biodb.TRACE[2024-06-26 23:31:14.402][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-26 23:31:14.403][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-26 23:31:14.405][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-26 23:31:14.406][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-26 23:31:14.408][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-26 23:31:14.409][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-26 23:31:14.412][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:14.413][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:14.415][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:14.429][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:14.431][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:14.432][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:14.433][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:14.435][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=57310".
biodb.DEBUG[2024-06-26 23:31:14.438][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-26 23:31:14.440][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-26 23:31:14.441][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=57310".
biodb.TRACE[2024-06-26 23:31:14.787][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=57310).
biodb.DEBUG[2024-06-26 23:31:15.139][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-26 23:31:15.144][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e616043f98d9256021d0f5715e02d37b.content"
biodb.TRACE[2024-06-26 23:31:15.151][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e616043f98d9256021d0f5715e02d37b.request"
biodb.TRACE[2024-06-26 23:31:15.158][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/57310.xml"
biodb.DEBUG[2024-06-26 23:31:15.162][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-26 23:31:15.164][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-26 23:31:15.167][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-26 23:31:15.170][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:15.172][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:15.174][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:15.190][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:15.192][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:15.193][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:15.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:15.197][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:15.198][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:15.199][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:15.200][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:15.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:15.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:15.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:15.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:15.208][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-26 23:31:15.209][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-26 23:31:15.211][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:15.213][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:15.215][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-26 23:31:15.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-26 23:31:15.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:15.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:15.224][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 23:31:15.226][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 23:31:15.228][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:15.230][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:15.233][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 23:31:15.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 23:31:15.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:15.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:15.246][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 23:31:15.248][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 23:31:15.249][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:15.250][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:15.252][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 23:31:15.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 23:31:15.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:15.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:15.257][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 23:31:15.258][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 23:31:15.259][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:15.261][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:15.262][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 23:31:15.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 23:31:15.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:15.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:15.268][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:31:15.269][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:31:15.270][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:15.272][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:15.273][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-26 23:31:15.275][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:15.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:15.277][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:15.279][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-26 23:31:15.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:15.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:15.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:15.285][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:15.286][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:15.288][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:15.289][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:15.291][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:15.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:15.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:15.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:15.296][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:31:15.297][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:31:15.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:15.300][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:15.302][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:31:15.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:31:15.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:15.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:15.307][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-26 23:31:15.308][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-26 23:31:15.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:15.310][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:15.312][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-26 23:31:15.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-26 23:31:15.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:15.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:15.317][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 23:31:15.319][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 23:31:15.320][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:15.321][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:15.322][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 23:31:15.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 23:31:15.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:15.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:15.328][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:15.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:15.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:15.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:15.333][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:15.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:15.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:15.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:15.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:15.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:15.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:15.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:15.343][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:15.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:15.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:15.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:15.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:15.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:15.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:15.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:15.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:15.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:15.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:15.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:15.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:15.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:15.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:15.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:15.370][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:15.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:15.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:15.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:15.375][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:15.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:15.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:15.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:15.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:15.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:15.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:15.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:15.385][self$createEntryFromContent] Accession numbers: 57310.
biodb.TRACE[2024-06-26 23:31:15.387][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:15.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:15.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:15.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:15.392][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:15.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:15.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:15.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:15.397][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:15.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:15.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:15.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:15.402][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:15.403][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:15.404][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:15.412][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:15.413][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:15.603][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:15.605][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:15.607][private$loadEntries] Creating entries from ids [1]: "66216".
biodb.DEBUG[2024-06-26 23:31:15.608][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-26 23:31:15.610][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66216".
biodb.TRACE[2024-06-26 23:31:15.612][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-26 23:31:15.613][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-26 23:31:15.615][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-26 23:31:15.616][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-26 23:31:15.618][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-26 23:31:15.619][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-26 23:31:15.622][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:15.623][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:15.625][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:15.632][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:15.634][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:15.635][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:15.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:15.638][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66216".
biodb.DEBUG[2024-06-26 23:31:15.641][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-26 23:31:15.643][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-26 23:31:15.644][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66216".
biodb.TRACE[2024-06-26 23:31:16.007][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66216).
biodb.DEBUG[2024-06-26 23:31:16.377][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-26 23:31:16.381][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a59039263bdeb010b063b31b1dcdd109.content"
biodb.TRACE[2024-06-26 23:31:16.387][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a59039263bdeb010b063b31b1dcdd109.request"
biodb.TRACE[2024-06-26 23:31:16.392][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66216.xml"
biodb.DEBUG[2024-06-26 23:31:16.395][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-26 23:31:16.397][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-26 23:31:16.399][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-26 23:31:16.401][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:16.402][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:16.404][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:16.415][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:16.417][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:16.429][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:16.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:16.437][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:16.440][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:16.442][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:16.444][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:16.447][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:16.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:16.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:16.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:16.456][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-26 23:31:16.458][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-26 23:31:16.460][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:16.462][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:16.465][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-26 23:31:16.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-26 23:31:16.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:16.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:16.474][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 23:31:16.476][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 23:31:16.478][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:16.480][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:16.482][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 23:31:16.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 23:31:16.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:16.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:16.490][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 23:31:16.493][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 23:31:16.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:16.497][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:16.499][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 23:31:16.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 23:31:16.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:16.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:16.508][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 23:31:16.510][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 23:31:16.512][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:16.514][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:16.517][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 23:31:16.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 23:31:16.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:16.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:16.525][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:31:16.527][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:31:16.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:16.531][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:16.533][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-26 23:31:16.536][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:16.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:16.540][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:16.542][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-26 23:31:16.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:16.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:16.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:16.548][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:16.550][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:16.552][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:16.553][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:16.555][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:16.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:16.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:16.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:16.560][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:31:16.562][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:31:16.563][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:16.564][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:16.566][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:31:16.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:31:16.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:16.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:16.574][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-26 23:31:16.576][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-26 23:31:16.577][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:16.579][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:16.580][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-26 23:31:16.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-26 23:31:16.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:16.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:16.586][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 23:31:16.587][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 23:31:16.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:16.590][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:16.591][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 23:31:16.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 23:31:16.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:16.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:16.608][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:16.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:16.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:16.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:16.617][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:16.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:16.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:16.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:16.625][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:16.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:16.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:16.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:16.634][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:16.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:16.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:16.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:16.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:16.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:16.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:16.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:16.647][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:16.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:16.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:16.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:16.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:16.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:16.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:16.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:16.659][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:16.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:16.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:16.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:16.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:16.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:16.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:16.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:16.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:16.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:16.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:16.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:16.675][self$createEntryFromContent] Accession numbers: 66216.
biodb.TRACE[2024-06-26 23:31:16.677][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:16.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:16.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:16.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:16.682][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:16.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:16.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:16.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:16.687][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:16.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:16.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:16.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:16.693][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:16.694][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:16.695][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:16.708][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:16.711][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:16.713][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:16.715][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:16.717][private$loadEntries] Creating entries from ids [1]: "70860".
biodb.DEBUG[2024-06-26 23:31:16.720][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-26 23:31:16.723][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70860".
biodb.TRACE[2024-06-26 23:31:16.725][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-26 23:31:16.726][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-26 23:31:16.728][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-26 23:31:16.730][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-26 23:31:16.731][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-26 23:31:16.733][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-26 23:31:16.736][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:16.737][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:16.738][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:16.752][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:16.753][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:16.755][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:16.756][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:16.758][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70860".
biodb.DEBUG[2024-06-26 23:31:16.769][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-26 23:31:16.771][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-26 23:31:16.773][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70860".
biodb.TRACE[2024-06-26 23:31:17.123][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70860).
biodb.DEBUG[2024-06-26 23:31:17.473][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-26 23:31:17.477][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/02f38adb5262f39c1de7b27972a97d3a.content"
biodb.TRACE[2024-06-26 23:31:17.485][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/02f38adb5262f39c1de7b27972a97d3a.request"
biodb.TRACE[2024-06-26 23:31:17.489][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70860.xml"
biodb.DEBUG[2024-06-26 23:31:17.493][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-26 23:31:17.495][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-26 23:31:17.496][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-26 23:31:17.499][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:17.500][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:17.501][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:17.509][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:17.510][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:17.511][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:17.513][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:17.515][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:17.517][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:17.518][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:17.519][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:17.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:17.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:17.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:17.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:17.529][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-26 23:31:17.531][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-26 23:31:17.533][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:17.535][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:17.538][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-26 23:31:17.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-26 23:31:17.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:17.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:17.546][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 23:31:17.548][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 23:31:17.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:17.552][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:17.555][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 23:31:17.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 23:31:17.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:17.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:17.564][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 23:31:17.566][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 23:31:17.568][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:17.570][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:17.573][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 23:31:17.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 23:31:17.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:17.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:17.581][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 23:31:17.583][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 23:31:17.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:17.587][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:17.590][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 23:31:17.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 23:31:17.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:17.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:17.598][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:31:17.600][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:31:17.602][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:17.604][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:17.607][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-26 23:31:17.609][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:17.611][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:17.613][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:17.616][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-26 23:31:17.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:17.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:17.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:17.624][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:17.626][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:17.628][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:17.630][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:17.633][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:17.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:17.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:17.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:17.652][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:31:17.655][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:31:17.657][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:17.659][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:17.662][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:31:17.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:31:17.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:17.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:17.671][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-26 23:31:17.673][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-26 23:31:17.675][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:17.677][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:17.679][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-26 23:31:17.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-26 23:31:17.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:17.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:17.687][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 23:31:17.690][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 23:31:17.691][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:17.693][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:17.696][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 23:31:17.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 23:31:17.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:17.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:17.704][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:17.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:17.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:17.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:17.712][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:17.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:17.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:17.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:17.720][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:17.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:17.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:17.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:17.728][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:17.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:17.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:17.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:17.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:17.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:17.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:17.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:17.740][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:17.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:17.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:17.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:17.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:17.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:17.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:17.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:17.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:17.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:17.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:17.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:17.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:17.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:17.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:17.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:17.768][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:17.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:17.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:17.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:17.776][self$createEntryFromContent] Accession numbers: 70860.
biodb.TRACE[2024-06-26 23:31:17.778][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:17.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:17.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:17.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:17.784][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:17.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:17.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:17.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:17.789][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:17.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:17.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:17.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:17.794][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:17.796][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:17.798][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:17.808][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:17.810][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:17.812][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:17.814][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:17.816][private$loadEntries] Creating entries from ids [1]: "70861".
biodb.DEBUG[2024-06-26 23:31:17.825][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-26 23:31:17.828][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70861".
biodb.TRACE[2024-06-26 23:31:17.830][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-26 23:31:17.833][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-26 23:31:17.834][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-26 23:31:17.836][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-26 23:31:17.838][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-26 23:31:17.839][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-26 23:31:17.843][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:17.844][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:17.846][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:17.860][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:17.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:17.863][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:17.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:17.865][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70861".
biodb.DEBUG[2024-06-26 23:31:17.870][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-26 23:31:17.871][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-26 23:31:17.874][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70861".
biodb.TRACE[2024-06-26 23:31:18.229][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70861).
biodb.DEBUG[2024-06-26 23:31:18.606][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-26 23:31:18.609][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2469ce985de4364ded27031736786fb4.content"
biodb.TRACE[2024-06-26 23:31:18.614][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2469ce985de4364ded27031736786fb4.request"
biodb.TRACE[2024-06-26 23:31:18.619][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70861.xml"
biodb.DEBUG[2024-06-26 23:31:18.623][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-26 23:31:18.626][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-26 23:31:18.629][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-26 23:31:18.631][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:18.633][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:18.634][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:18.649][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:18.651][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:18.652][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:18.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:18.656][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:18.657][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:18.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:18.660][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:18.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:18.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:18.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:18.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:18.667][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-26 23:31:18.668][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-26 23:31:18.669][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:18.670][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:18.672][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-26 23:31:18.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-26 23:31:18.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:18.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:18.677][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 23:31:18.679][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 23:31:18.680][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:18.681][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:18.682][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 23:31:18.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 23:31:18.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:18.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:18.688][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 23:31:18.689][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 23:31:18.691][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:18.692][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:18.693][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 23:31:18.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 23:31:18.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:18.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:18.699][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 23:31:18.700][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 23:31:18.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:18.703][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:18.710][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 23:31:18.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 23:31:18.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:18.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:18.717][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:31:18.719][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:31:18.720][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:18.721][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:18.723][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-26 23:31:18.725][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:18.727][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:18.728][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:18.729][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-26 23:31:18.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:18.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:18.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:18.735][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:18.736][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:18.737][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:18.739][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:18.740][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:18.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:18.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:18.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:18.746][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:31:18.747][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:31:18.748][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:18.749][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:18.751][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:31:18.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:31:18.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:18.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:18.758][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-26 23:31:18.760][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-26 23:31:18.762][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:18.763][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:18.764][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-26 23:31:18.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-26 23:31:18.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:18.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:18.770][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 23:31:18.771][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 23:31:18.773][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:18.774][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:18.776][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 23:31:18.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 23:31:18.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:18.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:18.781][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:18.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:18.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:18.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:18.787][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:18.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:18.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:18.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:18.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:18.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:18.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:18.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:18.798][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:18.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:18.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:18.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:18.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:18.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:18.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:18.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:18.809][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:18.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:18.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:18.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:18.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:18.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:18.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:18.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:18.822][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:18.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:18.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:18.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:18.827][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:18.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:18.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:18.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:18.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:18.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:18.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:18.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:18.843][self$createEntryFromContent] Accession numbers: 70861.
biodb.TRACE[2024-06-26 23:31:18.845][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:18.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:18.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:18.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:18.851][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:18.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:18.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:18.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:18.856][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:18.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:18.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:18.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:18.861][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:18.863][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:18.864][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:18.872][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:18.874][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:18.876][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:18.878][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:18.880][private$loadEntries] Creating entries from ids [1]: "78662".
biodb.DEBUG[2024-06-26 23:31:18.882][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-26 23:31:18.885][cch$loadFileContent] Trying to load 1 files from cache: [1]: "78662".
biodb.TRACE[2024-06-26 23:31:18.887][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-26 23:31:18.889][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-26 23:31:18.891][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-26 23:31:18.893][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-26 23:31:18.895][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-26 23:31:18.896][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-26 23:31:18.899][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:18.900][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:18.901][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:18.915][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:18.916][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:18.917][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:18.919][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:18.920][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78662".
biodb.DEBUG[2024-06-26 23:31:18.924][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-26 23:31:18.925][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-26 23:31:18.927][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78662".
biodb.TRACE[2024-06-26 23:31:19.276][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78662).
biodb.DEBUG[2024-06-26 23:31:19.683][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-26 23:31:19.686][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2a2164b6127ca54c00efe5984f5864a.content"
biodb.TRACE[2024-06-26 23:31:19.691][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2a2164b6127ca54c00efe5984f5864a.request"
biodb.TRACE[2024-06-26 23:31:19.695][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78662.xml"
biodb.DEBUG[2024-06-26 23:31:19.698][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-26 23:31:19.701][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-26 23:31:19.703][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-26 23:31:19.706][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:19.708][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:19.710][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:19.720][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:19.721][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:19.723][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:19.725][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:19.729][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:19.731][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:19.734][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:19.736][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:19.738][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:19.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:19.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:19.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:19.745][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-26 23:31:19.747][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-26 23:31:19.749][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:19.751][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:19.754][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-26 23:31:19.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-26 23:31:19.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:19.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:19.950][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 23:31:19.952][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 23:31:19.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:19.956][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:19.958][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 23:31:19.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 23:31:19.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:19.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:19.963][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 23:31:19.965][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 23:31:19.966][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:19.968][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:19.971][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 23:31:19.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 23:31:19.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:19.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:19.979][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 23:31:19.981][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 23:31:19.983][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:19.985][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:19.988][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 23:31:19.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 23:31:19.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:19.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:19.996][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:31:19.998][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:31:20.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:20.002][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:20.005][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-26 23:31:20.007][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:20.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:20.011][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:20.013][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-26 23:31:20.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:20.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:20.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:20.022][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:20.024][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:20.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:20.027][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:20.030][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:20.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:20.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:20.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:20.038][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:31:20.041][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:31:20.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:20.044][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:20.047][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:31:20.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:31:20.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:20.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:20.056][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-26 23:31:20.058][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-26 23:31:20.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:20.062][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:20.065][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-26 23:31:20.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-26 23:31:20.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:20.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:20.073][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 23:31:20.075][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 23:31:20.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:20.079][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:20.082][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 23:31:20.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 23:31:20.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:20.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:20.090][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:20.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:20.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:20.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:20.098][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:20.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:20.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:20.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:20.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:20.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:20.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:20.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:20.115][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:20.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:20.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:20.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:20.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:20.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:20.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:20.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:20.132][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:20.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:20.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:20.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:20.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:20.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:20.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:20.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:20.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:20.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:20.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:20.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:20.154][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:20.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:20.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:20.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:20.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:20.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:20.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:20.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:20.168][self$createEntryFromContent] Accession numbers: 78662.
biodb.TRACE[2024-06-26 23:31:20.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:20.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:20.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:20.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:20.179][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:20.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:20.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:20.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:20.188][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:20.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:20.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:20.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:20.196][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:20.198][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:20.200][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:20.223][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:20.225][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:20.226][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:20.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:20.229][private$loadEntries] Creating entries from ids [1]: "85084".
biodb.DEBUG[2024-06-26 23:31:20.230][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-26 23:31:20.233][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85084".
biodb.TRACE[2024-06-26 23:31:20.235][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-26 23:31:20.236][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-26 23:31:20.238][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-26 23:31:20.239][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-26 23:31:20.241][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-26 23:31:20.242][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-26 23:31:20.245][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:20.247][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:20.248][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:20.269][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:20.271][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:20.272][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:20.274][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:20.275][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85084".
biodb.DEBUG[2024-06-26 23:31:20.279][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-26 23:31:20.281][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-26 23:31:20.283][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85084".
biodb.TRACE[2024-06-26 23:31:20.646][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85084).
biodb.DEBUG[2024-06-26 23:31:21.022][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-26 23:31:21.027][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62216dc29cd0685dbac0a61545bda088.content"
biodb.TRACE[2024-06-26 23:31:21.037][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62216dc29cd0685dbac0a61545bda088.request"
biodb.TRACE[2024-06-26 23:31:21.046][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85084.xml"
biodb.DEBUG[2024-06-26 23:31:21.050][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-26 23:31:21.052][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-26 23:31:21.055][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-26 23:31:21.058][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:21.060][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:21.061][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:21.077][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:21.079][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:21.081][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:21.082][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:21.086][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:21.089][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:21.091][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:21.093][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:21.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:21.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:21.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:21.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:21.106][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-26 23:31:21.108][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-26 23:31:21.110][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:21.113][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:21.115][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-26 23:31:21.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-26 23:31:21.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:21.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:21.125][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 23:31:21.127][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 23:31:21.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:21.131][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:21.134][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 23:31:21.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 23:31:21.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:21.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:21.144][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 23:31:21.146][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 23:31:21.148][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:21.150][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:21.153][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 23:31:21.155][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 23:31:21.158][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:21.160][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:21.162][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:31:21.165][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:31:21.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:21.169][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:21.172][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-26 23:31:21.174][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:21.176][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:21.178][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:21.181][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-26 23:31:21.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:21.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:21.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:21.187][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:21.188][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:21.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:21.195][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:21.196][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:21.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:21.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:21.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:21.202][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:31:21.204][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:31:21.205][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:21.207][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:21.209][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:31:21.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:31:21.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:21.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:21.215][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-26 23:31:21.216][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-26 23:31:21.218][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:21.219][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:21.221][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-26 23:31:21.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-26 23:31:21.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:21.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:21.227][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 23:31:21.229][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 23:31:21.231][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:21.232][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:21.234][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:21.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:21.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:21.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:21.242][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:21.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:21.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:21.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:21.249][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:21.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:21.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:21.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:21.259][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:21.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:21.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:21.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:21.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:21.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:21.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:21.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:21.271][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:21.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:21.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:21.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:21.277][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:21.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:21.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:21.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:21.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:21.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:21.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:21.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:21.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:21.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:21.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:21.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:21.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:21.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:21.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:21.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:21.301][self$createEntryFromContent] Accession numbers: 85084.
biodb.TRACE[2024-06-26 23:31:21.302][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:21.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:21.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:21.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:21.308][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:21.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:21.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:21.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:21.314][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:21.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:21.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:21.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:21.320][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:21.321][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:21.323][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:21.641][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:21.643][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:21.644][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:21.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:21.648][private$loadEntries] Creating entries from ids [1]: "85086".
biodb.DEBUG[2024-06-26 23:31:21.650][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-26 23:31:21.653][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85086".
biodb.TRACE[2024-06-26 23:31:21.657][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-26 23:31:21.659][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-26 23:31:21.662][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-26 23:31:21.665][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-26 23:31:21.667][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-26 23:31:21.669][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-26 23:31:21.674][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:21.676][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:21.678][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:21.706][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:21.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:21.711][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:21.713][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:21.718][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85086".
biodb.DEBUG[2024-06-26 23:31:21.729][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-26 23:31:21.731][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-26 23:31:21.733][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85086".
biodb.TRACE[2024-06-26 23:31:22.170][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85086).
biodb.DEBUG[2024-06-26 23:31:22.575][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-26 23:31:22.579][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf3472363c4a7effe355d93315025f8b.content"
biodb.TRACE[2024-06-26 23:31:22.586][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf3472363c4a7effe355d93315025f8b.request"
biodb.TRACE[2024-06-26 23:31:22.592][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85086.xml"
biodb.DEBUG[2024-06-26 23:31:22.596][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-26 23:31:22.599][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-26 23:31:22.601][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-26 23:31:22.605][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:22.606][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:22.608][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:22.625][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:22.627][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:22.628][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:22.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:22.632][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:22.633][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:22.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:22.637][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:22.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:22.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:22.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:22.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:22.644][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-26 23:31:22.645][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-26 23:31:22.646][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:22.647][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:22.649][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-26 23:31:22.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-26 23:31:22.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:22.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:22.654][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 23:31:22.655][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 23:31:22.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:22.658][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:22.660][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 23:31:22.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 23:31:22.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:22.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:22.665][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 23:31:22.667][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 23:31:22.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:22.669][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:22.671][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 23:31:22.672][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 23:31:22.674][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:22.675][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:22.677][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:31:22.678][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:31:22.680][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:22.682][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:22.684][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-26 23:31:22.685][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:22.687][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:22.689][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:22.691][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-26 23:31:22.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:22.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:22.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:22.696][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:22.698][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:22.699][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:22.700][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:22.702][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:22.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:22.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:22.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:22.707][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:31:22.708][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:31:22.709][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:22.711][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:22.713][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:31:22.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:31:22.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:22.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:22.718][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-26 23:31:22.719][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-26 23:31:22.721][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:22.722][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:22.724][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-26 23:31:22.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-26 23:31:22.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:22.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:22.729][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 23:31:22.730][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 23:31:22.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:22.733][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:22.734][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:22.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:22.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:22.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:22.741][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:22.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:22.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:22.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:22.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:22.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:22.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:22.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:22.754][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:22.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:22.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:22.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:22.759][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:22.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:22.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:22.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:22.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:22.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:22.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:22.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:22.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:22.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:22.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:22.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:22.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:22.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:22.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:22.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:22.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:22.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:22.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:22.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:22.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:22.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:22.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:22.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:22.792][self$createEntryFromContent] Accession numbers: 85086.
biodb.TRACE[2024-06-26 23:31:22.793][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:22.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:22.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:22.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:22.799][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:22.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:22.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:22.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:22.804][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:22.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:22.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:22.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:22.810][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:22.811][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:22.813][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:22.825][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:22.827][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:22.829][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:22.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:22.833][private$loadEntries] Creating entries from ids [1]: "88123".
biodb.DEBUG[2024-06-26 23:31:22.835][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-26 23:31:22.839][cch$loadFileContent] Trying to load 1 files from cache: [1]: "88123".
biodb.TRACE[2024-06-26 23:31:22.841][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-26 23:31:22.844][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-26 23:31:22.846][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-26 23:31:22.848][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-26 23:31:22.851][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-26 23:31:22.852][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-26 23:31:22.857][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:22.859][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:22.861][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:22.883][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:22.885][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:22.887][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:22.890][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:22.892][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88123".
biodb.DEBUG[2024-06-26 23:31:22.898][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-26 23:31:22.900][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-26 23:31:22.903][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88123".
biodb.TRACE[2024-06-26 23:31:23.260][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88123).
biodb.DEBUG[2024-06-26 23:31:23.711][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-26 23:31:23.714][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e37f256f660b350650d4ca45d7cd291.content"
biodb.TRACE[2024-06-26 23:31:23.721][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e37f256f660b350650d4ca45d7cd291.request"
biodb.TRACE[2024-06-26 23:31:23.725][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88123.xml"
biodb.DEBUG[2024-06-26 23:31:23.729][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-26 23:31:23.731][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-26 23:31:23.733][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-26 23:31:23.735][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:23.737][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:23.738][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:23.765][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:23.766][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:23.768][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:23.769][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:23.772][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:23.773][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:23.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:23.776][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:23.777][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:23.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:23.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:23.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:23.783][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-26 23:31:23.784][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-26 23:31:23.786][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:23.787][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:23.788][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-26 23:31:23.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-26 23:31:23.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:23.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:23.794][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 23:31:23.796][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 23:31:23.797][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:23.798][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:23.800][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 23:31:23.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 23:31:23.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:23.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:23.805][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 23:31:23.806][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 23:31:23.807][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:23.808][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:23.810][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 23:31:23.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 23:31:23.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:23.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:23.820][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 23:31:23.822][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 23:31:23.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:23.826][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:23.828][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 23:31:23.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 23:31:23.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:23.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:23.837][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:31:23.839][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:31:23.842][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:23.844][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:23.846][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-26 23:31:23.849][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:23.851][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:23.852][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:23.854][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-26 23:31:23.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:23.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:23.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:23.861][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:23.863][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:23.865][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:23.867][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:23.870][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:23.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:23.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:23.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:23.878][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:31:23.880][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:31:23.882][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:23.884][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:23.886][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:31:23.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:31:23.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:23.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:23.892][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-26 23:31:23.893][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-26 23:31:23.894][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:23.896][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:23.897][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-26 23:31:23.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-26 23:31:23.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:23.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:23.903][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 23:31:23.904][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 23:31:23.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:23.906][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:23.909][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 23:31:23.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 23:31:23.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:23.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:23.918][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:23.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:23.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:23.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:23.923][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:23.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:23.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:23.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:23.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:23.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:23.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:23.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:23.936][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:23.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:23.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:23.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:23.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:23.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:23.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:23.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:23.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:23.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:23.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:23.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:23.953][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:23.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:23.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:23.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:23.959][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:23.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:23.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:23.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:23.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:23.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:23.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:23.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:23.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:23.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:23.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:23.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:23.975][self$createEntryFromContent] Accession numbers: 88123.
biodb.TRACE[2024-06-26 23:31:23.976][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:23.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:23.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:23.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:23.991][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:23.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:23.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:23.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:23.999][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:24.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:24.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:24.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:24.005][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:24.006][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:24.007][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:24.037][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:24.039][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:24.041][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:24.042][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:24.044][private$loadEntries] Creating entries from ids [1]: "134117".
biodb.DEBUG[2024-06-26 23:31:24.045][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-26 23:31:24.047][cch$loadFileContent] Trying to load 1 files from cache: [1]: "134117".
biodb.TRACE[2024-06-26 23:31:24.049][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-26 23:31:24.051][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-26 23:31:24.052][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-26 23:31:24.053][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-26 23:31:24.054][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-26 23:31:24.056][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-26 23:31:24.059][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:24.060][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:24.061][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:24.081][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:24.083][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:24.085][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:24.087][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:24.090][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=134117".
biodb.DEBUG[2024-06-26 23:31:24.095][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-26 23:31:24.096][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-26 23:31:24.098][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=134117".
biodb.TRACE[2024-06-26 23:31:24.488][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=134117).
biodb.DEBUG[2024-06-26 23:31:24.861][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-26 23:31:24.865][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8f998f0023bf19b8745b926f0b2992d7.content"
biodb.TRACE[2024-06-26 23:31:24.873][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8f998f0023bf19b8745b926f0b2992d7.request"
biodb.TRACE[2024-06-26 23:31:24.879][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/134117.xml"
biodb.DEBUG[2024-06-26 23:31:24.884][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-26 23:31:24.886][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-26 23:31:24.889][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-26 23:31:24.892][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:24.894][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:24.896][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:24.913][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:24.914][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:24.916][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:24.917][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:24.919][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:24.921][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:24.922][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:24.923][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:24.925][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:24.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:24.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:24.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:24.930][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-26 23:31:24.931][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-26 23:31:24.932][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:24.933][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:24.935][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-26 23:31:24.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-26 23:31:24.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:24.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:24.940][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 23:31:24.942][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 23:31:24.943][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:24.944][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:24.946][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 23:31:24.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 23:31:24.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:24.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:24.954][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 23:31:24.956][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 23:31:24.958][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:24.960][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:24.962][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 23:31:24.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 23:31:24.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:24.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:24.968][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 23:31:24.969][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 23:31:24.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:24.971][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:24.973][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 23:31:24.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 23:31:24.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:24.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:24.978][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:31:24.979][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:31:24.981][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:24.982][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:24.983][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-26 23:31:24.985][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:24.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:24.987][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:24.988][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-26 23:31:24.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:24.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:24.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:24.994][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:24.995][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:24.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:24.997][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:24.999][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:25.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:25.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:25.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:25.004][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:31:25.005][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:31:25.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:25.008][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:25.010][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:31:25.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:31:25.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:25.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:25.015][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-26 23:31:25.016][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-26 23:31:25.018][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:25.019][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:25.020][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-26 23:31:25.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-26 23:31:25.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:25.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:25.026][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 23:31:25.027][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 23:31:25.028][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:25.029][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:25.031][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 23:31:25.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 23:31:25.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:25.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:25.037][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:25.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:25.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:25.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:25.042][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:25.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:25.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:25.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:25.047][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:25.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:25.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:25.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:25.052][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:25.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:25.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:25.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:25.057][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:25.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:25.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:25.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:25.062][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:25.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:25.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:25.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:25.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:25.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:25.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:25.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:25.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:25.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:25.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:25.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:25.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:25.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:25.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:25.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:25.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:25.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:25.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:25.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:25.087][self$createEntryFromContent] Accession numbers: 134117.
biodb.TRACE[2024-06-26 23:31:25.088][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:25.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:25.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:25.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:25.093][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:25.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:25.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:25.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:25.098][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:25.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:25.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:25.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:25.106][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:25.107][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:25.108][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:25.115][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:25.117][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:25.118][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:25.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:25.120][private$loadEntries] Creating entries from ids [1]: "138307".
biodb.DEBUG[2024-06-26 23:31:25.122][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-26 23:31:25.124][cch$loadFileContent] Trying to load 1 files from cache: [1]: "138307".
biodb.TRACE[2024-06-26 23:31:25.125][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-26 23:31:25.127][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-26 23:31:25.128][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-26 23:31:25.129][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-26 23:31:25.131][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-26 23:31:25.132][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-26 23:31:25.135][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:25.136][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:25.137][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:25.153][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:25.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:25.155][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:25.157][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:25.159][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=138307".
biodb.DEBUG[2024-06-26 23:31:25.163][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-26 23:31:25.164][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-26 23:31:25.166][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=138307".
biodb.TRACE[2024-06-26 23:31:25.514][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=138307).
biodb.DEBUG[2024-06-26 23:31:25.874][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-26 23:31:25.878][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a2610bdf009c6327ccf7d519fff16ded.content"
biodb.TRACE[2024-06-26 23:31:25.885][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a2610bdf009c6327ccf7d519fff16ded.request"
biodb.TRACE[2024-06-26 23:31:25.891][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/138307.xml"
biodb.DEBUG[2024-06-26 23:31:25.895][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-26 23:31:25.897][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-26 23:31:25.900][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-26 23:31:25.903][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:25.904][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:25.906][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:25.924][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:25.926][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:25.927][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:25.929][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:25.933][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:25.935][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:25.937][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:25.939][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:25.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:25.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:25.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:25.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:25.946][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-26 23:31:25.948][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-26 23:31:25.950][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:25.952][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:25.954][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-26 23:31:25.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-26 23:31:25.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:25.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:25.963][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 23:31:25.965][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 23:31:25.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:25.968][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:25.970][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 23:31:25.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 23:31:25.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:25.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:25.976][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 23:31:25.978][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 23:31:25.980][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:25.981][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:25.983][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 23:31:25.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 23:31:25.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:25.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:25.988][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 23:31:25.990][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 23:31:25.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:25.992][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:25.994][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 23:31:25.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 23:31:25.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:25.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:26.000][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:31:26.002][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:31:26.004][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:26.005][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:26.007][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-26 23:31:26.008][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:26.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:26.011][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:26.013][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-26 23:31:26.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:26.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:26.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:26.019][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:26.022][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:26.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:26.025][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:26.027][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:26.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:26.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:26.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:26.033][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:31:26.035][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:31:26.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:26.038][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:26.039][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:31:26.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:31:26.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:26.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:26.045][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-26 23:31:26.047][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-26 23:31:26.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:26.049][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:26.057][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-26 23:31:26.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-26 23:31:26.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:26.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:26.065][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 23:31:26.067][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 23:31:26.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:26.069][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:26.071][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 23:31:26.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 23:31:26.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:26.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:26.077][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:26.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:26.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:26.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:26.082][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:26.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:26.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:26.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:26.087][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:26.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:26.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:26.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:26.093][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:26.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:26.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:26.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:26.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:26.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:26.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:26.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:26.108][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:26.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:26.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:26.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:26.114][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:26.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:26.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:26.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:26.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:26.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:26.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:26.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:26.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:26.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:26.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:26.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:26.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:26.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:26.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:26.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:26.137][self$createEntryFromContent] Accession numbers: 138307.
biodb.TRACE[2024-06-26 23:31:26.140][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:26.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:26.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:26.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:26.148][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:26.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:26.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:26.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:26.153][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:26.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:26.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:26.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:26.158][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:26.159][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:26.161][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:26.177][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:26.179][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:26.180][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:26.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:26.182][private$loadEntries] Creating entries from ids [1]: "176803".
biodb.DEBUG[2024-06-26 23:31:26.184][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-26 23:31:26.187][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176803".
biodb.TRACE[2024-06-26 23:31:26.188][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-26 23:31:26.190][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-26 23:31:26.191][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-26 23:31:26.194][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-26 23:31:26.196][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-26 23:31:26.197][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-26 23:31:26.200][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:26.202][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:26.203][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:26.227][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:26.229][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:26.231][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:26.233][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:26.236][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176803".
biodb.DEBUG[2024-06-26 23:31:26.241][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-26 23:31:26.243][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-26 23:31:26.246][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176803".
biodb.TRACE[2024-06-26 23:31:26.599][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176803).
biodb.DEBUG[2024-06-26 23:31:26.957][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-26 23:31:26.960][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/648921bf283f148f1437569ccee0fc41.content"
biodb.TRACE[2024-06-26 23:31:26.966][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/648921bf283f148f1437569ccee0fc41.request"
biodb.TRACE[2024-06-26 23:31:26.971][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176803.xml"
biodb.DEBUG[2024-06-26 23:31:26.975][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-26 23:31:26.976][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-26 23:31:26.978][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-26 23:31:26.981][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:26.982][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:26.983][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:27.108][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:27.110][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:27.111][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:27.112][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:27.115][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:27.117][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:27.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:27.119][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:27.121][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:27.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:27.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:27.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:27.127][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-26 23:31:27.128][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-26 23:31:27.130][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:27.131][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:27.133][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-26 23:31:27.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-26 23:31:27.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:27.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:27.138][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 23:31:27.139][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 23:31:27.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:27.142][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:27.143][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 23:31:27.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 23:31:27.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:27.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:27.148][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 23:31:27.150][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 23:31:27.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:27.152][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:27.154][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 23:31:27.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 23:31:27.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:27.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:27.159][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 23:31:27.160][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 23:31:27.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:27.162][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:27.164][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 23:31:27.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 23:31:27.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:27.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:27.169][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:31:27.170][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:31:27.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:27.173][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:27.174][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-26 23:31:27.176][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:27.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:27.178][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:27.180][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-26 23:31:27.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:27.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:27.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:27.185][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:27.187][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:27.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:27.190][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:27.192][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:27.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:27.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:27.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:27.197][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:31:27.198][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:31:27.199][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:27.200][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:27.202][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:31:27.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:31:27.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:27.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:27.207][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-26 23:31:27.209][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-26 23:31:27.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:27.211][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:27.212][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-26 23:31:27.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-26 23:31:27.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:27.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:27.218][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 23:31:27.219][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 23:31:27.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:27.222][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:27.224][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 23:31:27.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 23:31:27.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:27.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:27.230][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:27.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:27.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:27.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:27.235][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:27.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:27.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:27.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:27.240][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:27.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:27.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:27.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:27.245][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:27.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:27.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:27.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:27.250][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:27.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:27.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:27.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:27.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:27.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:27.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:27.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:27.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:27.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:27.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:27.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:27.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:27.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:27.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:27.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:27.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:27.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:27.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:27.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:27.276][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:27.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:27.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:27.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:27.281][self$createEntryFromContent] Accession numbers: 176803.
biodb.TRACE[2024-06-26 23:31:27.282][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:27.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:27.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:27.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:27.287][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:27.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:27.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:27.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:27.292][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:27.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:27.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:27.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:27.297][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:27.298][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:27.300][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:27.324][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:27.326][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:27.328][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:27.330][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:27.332][private$loadEntries] Creating entries from ids [1]: "176962".
biodb.DEBUG[2024-06-26 23:31:27.333][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-26 23:31:27.335][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176962".
biodb.TRACE[2024-06-26 23:31:27.337][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-26 23:31:27.339][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-26 23:31:27.340][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-26 23:31:27.342][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-26 23:31:27.343][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-26 23:31:27.344][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-26 23:31:27.348][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:27.349][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:27.350][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:27.379][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:27.381][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:27.382][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:27.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:27.386][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176962".
biodb.DEBUG[2024-06-26 23:31:27.390][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-26 23:31:27.392][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-26 23:31:27.394][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176962".
biodb.TRACE[2024-06-26 23:31:27.743][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176962).
biodb.DEBUG[2024-06-26 23:31:28.092][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-26 23:31:28.095][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/881a0b9df4a64ff0258c2dc68959eb26.content"
biodb.TRACE[2024-06-26 23:31:28.100][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/881a0b9df4a64ff0258c2dc68959eb26.request"
biodb.TRACE[2024-06-26 23:31:28.104][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176962.xml"
biodb.DEBUG[2024-06-26 23:31:28.107][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-26 23:31:28.108][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-26 23:31:28.110][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-26 23:31:28.112][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:28.113][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:28.114][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:28.149][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:28.151][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:28.153][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:28.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:28.159][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:28.161][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:28.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:28.165][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:28.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:28.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:28.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:28.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:28.176][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-26 23:31:28.178][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-26 23:31:28.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:28.182][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:28.184][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-26 23:31:28.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-26 23:31:28.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:28.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:28.191][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 23:31:28.192][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 23:31:28.199][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:28.202][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:28.204][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 23:31:28.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 23:31:28.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:28.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:28.209][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 23:31:28.211][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 23:31:28.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:28.213][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:28.215][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 23:31:28.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 23:31:28.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:28.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:28.220][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 23:31:28.221][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 23:31:28.222][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:28.224][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:28.225][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 23:31:28.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 23:31:28.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:28.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:28.230][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:31:28.232][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:31:28.233][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:28.234][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:28.236][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-26 23:31:28.237][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:28.238][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:28.239][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:28.241][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-26 23:31:28.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:28.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:28.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:28.246][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:28.247][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:28.248][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:28.249][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:28.251][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:28.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:28.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:28.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:28.258][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:31:28.260][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:31:28.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:28.264][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:28.266][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:31:28.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:31:28.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:28.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:28.271][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-26 23:31:28.272][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-26 23:31:28.273][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:28.275][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:28.276][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-26 23:31:28.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-26 23:31:28.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:28.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:28.281][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 23:31:28.283][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 23:31:28.284][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:28.285][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:28.287][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 23:31:28.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 23:31:28.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:28.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:28.292][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:28.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:28.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:28.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:28.297][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:28.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:28.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:28.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:28.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:28.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:28.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:28.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:28.306][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:28.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:28.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:28.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:28.312][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:28.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:28.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:28.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:28.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:28.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:28.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:28.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:28.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:28.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:28.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:28.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:28.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:28.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:28.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:28.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:28.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:28.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:28.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:28.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:28.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:28.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:28.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:28.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:28.360][self$createEntryFromContent] Accession numbers: 176962.
biodb.TRACE[2024-06-26 23:31:28.362][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:28.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:28.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:28.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:28.369][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:28.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:28.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:28.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:28.376][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:28.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:28.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:28.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:28.380][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:28.381][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:28.383][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:28.409][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:28.411][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:28.413][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:28.415][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:28.417][private$loadEntries] Creating entries from ids [1]: "198655".
biodb.DEBUG[2024-06-26 23:31:28.419][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-26 23:31:28.421][cch$loadFileContent] Trying to load 1 files from cache: [1]: "198655".
biodb.TRACE[2024-06-26 23:31:28.423][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-26 23:31:28.424][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-26 23:31:28.426][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-26 23:31:28.427][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-26 23:31:28.428][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-26 23:31:28.430][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-26 23:31:28.433][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:28.434][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:28.435][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:28.442][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:28.444][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:28.445][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:28.447][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:28.448][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=198655".
biodb.DEBUG[2024-06-26 23:31:28.452][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-26 23:31:28.453][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-26 23:31:28.455][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=198655".
biodb.TRACE[2024-06-26 23:31:28.799][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=198655).
biodb.DEBUG[2024-06-26 23:31:29.149][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-26 23:31:29.152][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2e175d021d3c86c1362fa584a90fbad.content"
biodb.TRACE[2024-06-26 23:31:29.157][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2e175d021d3c86c1362fa584a90fbad.request"
biodb.TRACE[2024-06-26 23:31:29.161][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/198655.xml"
biodb.DEBUG[2024-06-26 23:31:29.163][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-26 23:31:29.165][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-26 23:31:29.166][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-26 23:31:29.168][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:29.169][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:29.170][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:29.192][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:29.194][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:29.195][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:29.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:29.199][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:29.200][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:29.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:29.202][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:29.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:29.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:29.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:29.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:29.209][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-26 23:31:29.210][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-26 23:31:29.211][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:29.213][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:29.214][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-26 23:31:29.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-26 23:31:29.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:29.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:29.219][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 23:31:29.221][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 23:31:29.222][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:29.223][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:29.225][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 23:31:29.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 23:31:29.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:29.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:29.230][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 23:31:29.231][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 23:31:29.232][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:29.234][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:29.235][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 23:31:29.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 23:31:29.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:29.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:29.240][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 23:31:29.241][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 23:31:29.243][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:29.244][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:29.245][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 23:31:29.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 23:31:29.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:29.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:29.250][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:31:29.252][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:31:29.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:29.254][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:29.256][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-26 23:31:29.257][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:29.258][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:29.259][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:29.261][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-26 23:31:29.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:29.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:29.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:29.266][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:29.267][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:29.268][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:29.270][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:29.271][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:29.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:29.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:29.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:29.276][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:31:29.278][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:31:29.279][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:29.280][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:29.282][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:31:29.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:31:29.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:29.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:29.287][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-26 23:31:29.288][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-26 23:31:29.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:29.290][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:29.292][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-26 23:31:29.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-26 23:31:29.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:29.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:29.297][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 23:31:29.298][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 23:31:29.300][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:29.301][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:29.302][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 23:31:29.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 23:31:29.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:29.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:29.308][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:29.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:29.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:29.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:29.312][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:29.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:29.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:29.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:29.317][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:29.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:29.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:29.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:29.322][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:29.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:29.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:29.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:29.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:29.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:29.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:29.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:29.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:29.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:29.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:29.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:29.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:29.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:29.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:29.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:29.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:29.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:29.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:29.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:29.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:29.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:29.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:29.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:29.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:29.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:29.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:29.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:29.358][self$createEntryFromContent] Accession numbers: 198655.
biodb.TRACE[2024-06-26 23:31:29.359][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:29.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:29.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:29.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:29.364][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:29.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:29.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:29.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:29.369][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:29.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:29.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:29.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:29.374][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:29.375][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:29.376][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:29.393][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:29.394][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:29.396][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:29.397][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:29.398][private$loadEntries] Creating entries from ids [1]: "215045".
biodb.DEBUG[2024-06-26 23:31:29.399][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-26 23:31:29.401][cch$loadFileContent] Trying to load 1 files from cache: [1]: "215045".
biodb.TRACE[2024-06-26 23:31:29.403][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-26 23:31:29.404][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-26 23:31:29.406][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-26 23:31:29.407][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-26 23:31:29.408][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-26 23:31:29.409][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-26 23:31:29.412][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:29.414][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:29.415][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:29.450][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:29.452][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:29.453][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:29.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:29.456][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=215045".
biodb.DEBUG[2024-06-26 23:31:29.459][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-26 23:31:29.461][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-26 23:31:29.462][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=215045".
biodb.TRACE[2024-06-26 23:31:29.808][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=215045).
biodb.DEBUG[2024-06-26 23:31:30.156][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-26 23:31:30.160][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5fb598055294db64f197c61a6e36b01a.content"
biodb.TRACE[2024-06-26 23:31:30.166][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5fb598055294db64f197c61a6e36b01a.request"
biodb.TRACE[2024-06-26 23:31:30.170][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/215045.xml"
biodb.DEBUG[2024-06-26 23:31:30.173][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-26 23:31:30.175][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-26 23:31:30.176][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-26 23:31:30.178][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:30.180][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:30.181][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:30.203][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:30.204][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:30.205][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:30.206][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:30.209][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:30.210][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:30.211][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:30.212][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:30.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:30.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:30.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:30.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:30.219][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-26 23:31:30.220][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-26 23:31:30.221][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:30.222][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:30.224][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-26 23:31:30.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-26 23:31:30.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:30.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:30.229][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 23:31:30.230][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 23:31:30.231][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:30.232][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:30.234][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 23:31:30.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 23:31:30.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:30.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:30.239][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 23:31:30.240][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 23:31:30.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:30.243][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:30.244][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 23:31:30.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 23:31:30.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:30.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:30.249][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 23:31:30.250][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 23:31:30.251][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:30.252][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:30.254][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 23:31:30.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 23:31:30.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:30.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:30.259][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:31:30.260][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:31:30.261][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:30.262][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:30.264][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-26 23:31:30.265][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:30.266][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:30.267][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:30.269][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-26 23:31:30.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:30.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:30.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:30.274][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:30.275][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:30.277][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:30.278][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:30.279][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:30.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:30.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:30.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:30.284][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:31:30.286][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:31:30.287][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:30.288][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:30.291][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:31:30.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:31:30.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:30.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:30.297][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-26 23:31:30.298][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-26 23:31:30.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:30.300][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:30.302][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-26 23:31:30.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-26 23:31:30.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:30.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:30.308][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 23:31:30.310][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 23:31:30.312][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:30.313][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:30.315][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 23:31:30.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 23:31:30.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:30.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:30.320][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:30.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:30.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:30.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:30.326][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:30.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:30.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:30.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:30.331][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:30.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:30.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:30.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:30.336][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:30.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:30.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:30.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:30.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:30.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:30.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:30.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:30.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:30.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:30.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:30.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:30.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:30.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:30.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:30.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:30.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:30.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:30.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:30.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:30.361][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:30.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:30.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:30.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:30.366][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:30.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:30.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:30.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:30.371][self$createEntryFromContent] Accession numbers: 215045.
biodb.TRACE[2024-06-26 23:31:30.372][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:30.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:30.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:30.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:30.377][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:30.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:30.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:30.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:30.382][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:30.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:30.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:30.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:30.494][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-26 23:31:30.500][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-26 23:31:30.503][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-06-26 23:31:30.506][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-26 23:31:30.510][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-06-26 23:31:30.515][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:30.517][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:30.519][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:30.533][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:30.535][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:30.536][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:30.537][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:30.538][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:30.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:30.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:30.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:30.544][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:30.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:30.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:30.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:30.549][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:30.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:30.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:30.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:30.554][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:30.555][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:30.556][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:30.578][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:30.580][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:30.581][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:30.582][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:30.584][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:30.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:30.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:30.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:30.589][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:30.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:30.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:30.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:30.601][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:30.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:30.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:30.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:30.607][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:30.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:30.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:30.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:30.612][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:30.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:30.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:30.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:30.617][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:30.619][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:30.620][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:30.655][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:30.657][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:30.658][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:30.659][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:30.661][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:30.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:30.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:30.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:30.666][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:30.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:30.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:30.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:30.672][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:30.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:30.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:30.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:30.678][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:30.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:30.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:30.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:30.684][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:30.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:30.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:30.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:30.690][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:30.691][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:30.692][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:30.707][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:30.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:30.711][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:30.712][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:30.714][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:30.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:30.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:30.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:30.720][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:30.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:30.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:30.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:30.726][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:30.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:30.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:30.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:30.733][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:30.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:30.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:30.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:30.739][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:30.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:30.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:30.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:30.744][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:30.745][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:30.746][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:30.773][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:30.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:30.775][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:30.776][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:30.778][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:30.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:30.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:30.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:30.783][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:30.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:30.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:30.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:30.788][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:30.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:30.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:30.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:30.793][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:30.801][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:30.803][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:30.822][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:30.824][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:30.826][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:30.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:30.831][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:30.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:30.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:30.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:30.839][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:30.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:30.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:30.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:30.848][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:30.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:30.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:30.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:30.856][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:30.858][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:30.860][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:30.871][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:30.874][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:30.876][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:30.878][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:30.880][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:30.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:30.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:30.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:30.889][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:30.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:30.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:30.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:30.897][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:30.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:30.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:30.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:30.905][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:30.907][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:30.909][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:30.921][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:30.923][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:30.925][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:30.927][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:30.929][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:30.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:30.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:30.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:30.937][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:30.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:30.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:30.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:30.945][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:30.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:30.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:30.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:30.954][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:30.955][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:30.957][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:30.983][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:30.985][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:30.987][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:30.989][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:30.991][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:30.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:30.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:30.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:30.998][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:31.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:31.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:31.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:31.006][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:31.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:31.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:31.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:31.013][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:31.014][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:31.016][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:31.046][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:31.047][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:31.048][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:31.050][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:31.052][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:31.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:31.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:31.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:31.057][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:31.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:31.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:31.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:31.063][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:31.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:31.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:31.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:31.068][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:31.069][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:31.070][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:31.078][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:31.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:31.081][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:31.083][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:31.084][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:31.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:31.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:31.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:31.089][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:31.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:31.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:31.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:31.094][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:31.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:31.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:31.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:31.102][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:31.104][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:31.106][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:31.274][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:31.275][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:31.277][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:31.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:31.279][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:31.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:31.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:31.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:31.285][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:31.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:31.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:31.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:31.290][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:31.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:31.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:31.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:31.295][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:31.296][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:31.297][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:31.327][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:31.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:31.330][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:31.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:31.332][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:31.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:31.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:31.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:31.337][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:31.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:31.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:31.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:31.342][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:31.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:31.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:31.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:31.347][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:31.349][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:31.350][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:31.380][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:31.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:31.383][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:31.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:31.386][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:31.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:31.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:31.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:31.391][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:31.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:31.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:31.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:31.397][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:31.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:31.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:31.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:31.404][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:31.405][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:31.406][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:31.443][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:31.445][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:31.447][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:31.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:31.451][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:31.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:31.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:31.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:31.460][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:31.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:31.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:31.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:31.468][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:31.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:31.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:31.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:31.475][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:31.477][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:31.479][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:31.505][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:31.506][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:31.508][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:31.509][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:31.510][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:31.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:31.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:31.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:31.516][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:31.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:31.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:31.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:31.522][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:31.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:31.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:31.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:31.527][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:31.528][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:31.530][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:31.557][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:31.559][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:31.561][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:31.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:31.565][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:31.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:31.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:31.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:31.572][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:31.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:31.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:31.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:31.578][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:31.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:31.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:31.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:31.586][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:31.588][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:31.590][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:31.598][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:31.600][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:31.601][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:31.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:31.604][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:31.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:31.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:31.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:31.609][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:31.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:31.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:31.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:31.614][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:31.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:31.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:31.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:31.619][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:31.620][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:31.621][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:31.634][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:31.635][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:31.637][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:31.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:31.639][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:31.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:31.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:31.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:31.645][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:31.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:31.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:31.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:31.651][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:31.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:31.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:31.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:31.656][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:31.657][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:31.658][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:31.714][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:31.717][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:31.719][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:31.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:31.724][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:31.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:31.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:31.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:31.733][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:31.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:31.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:31.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:31.741][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:31.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:31.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:31.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:31.800][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:31.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:31.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:31.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:31.806][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:31.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:31.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:31.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:31.817][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:31.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:31.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:31.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:31.823][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:31.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:31.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:31.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:31.828][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:31.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:31.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:31.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:31.857][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.INFO [2024-06-26 23:31:31.861][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649" for "chebi-0c5076ac2a43d16dbce503a44b09f649".
biodb.DEBUG[2024-06-26 23:31:31.864][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-26 23:31:31.866][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-26 23:31:31.870][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-06-26 23:31:32.220][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-06-26 23:31:32.578][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-26 23:31:32.583][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c5171beada848a87ef2ffa10427d9be3.content"
biodb.TRACE[2024-06-26 23:31:32.591][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c5171beada848a87ef2ffa10427d9be3.request"
biodb.DEBUG[2024-06-26 23:31:32.598][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-26 23:31:32.604][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-26 23:31:32.606][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-26 23:31:32.608][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-06-26 23:31:32.962][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-06-26 23:31:33.314][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-26 23:31:33.318][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/750e63ff76a843f016511fa71c89113e.content"
biodb.TRACE[2024-06-26 23:31:33.326][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/750e63ff76a843f016511fa71c89113e.request"
biodb.DEBUG[2024-06-26 23:31:33.332][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:33.334][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:33.336][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:33.351][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:33.353][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:33.355][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:33.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:33.359][private$loadEntries] Creating entries from ids [1]: "4648".
biodb.DEBUG[2024-06-26 23:31:33.361][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-26 23:31:33.364][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4648".
biodb.TRACE[2024-06-26 23:31:33.367][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-26 23:31:33.369][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-26 23:31:33.371][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-26 23:31:33.374][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-26 23:31:33.376][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-26 23:31:33.378][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-26 23:31:33.381][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:33.383][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:33.384][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:33.402][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:33.404][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:33.406][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:33.407][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:33.409][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4648".
biodb.DEBUG[2024-06-26 23:31:33.412][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-26 23:31:33.414][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-26 23:31:33.416][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4648".
biodb.TRACE[2024-06-26 23:31:33.767][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4648).
biodb.DEBUG[2024-06-26 23:31:34.115][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-26 23:31:34.119][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/844829d8afb6d338ebac906e62f6cb8e.content"
biodb.TRACE[2024-06-26 23:31:34.125][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/844829d8afb6d338ebac906e62f6cb8e.request"
biodb.TRACE[2024-06-26 23:31:34.131][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4648.xml"
biodb.DEBUG[2024-06-26 23:31:34.135][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-26 23:31:34.137][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-26 23:31:34.140][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-26 23:31:34.142][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:34.143][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:34.144][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:34.159][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:34.161][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:34.162][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:34.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:34.168][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:34.170][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:34.171][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:34.172][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:34.174][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:34.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:34.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:34.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:34.179][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-26 23:31:34.180][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-26 23:31:34.181][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:34.182][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:34.185][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-26 23:31:34.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-26 23:31:34.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:34.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:34.193][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 23:31:34.195][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 23:31:34.197][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:34.199][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:34.202][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 23:31:34.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 23:31:34.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:34.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:34.210][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 23:31:34.212][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 23:31:34.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:34.216][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:34.219][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 23:31:34.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 23:31:34.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:34.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:34.227][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 23:31:34.229][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 23:31:34.231][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:34.233][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:34.236][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 23:31:34.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 23:31:34.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:34.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:34.244][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:31:34.246][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:31:34.248][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:34.250][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:34.253][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:31:34.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:31:34.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:34.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:34.261][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-26 23:31:34.263][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:34.265][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:34.267][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:34.270][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-26 23:31:34.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:34.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:34.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:34.281][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:34.284][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:34.287][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:34.289][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:34.292][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:34.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:34.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:34.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:34.301][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:31:34.304][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:31:34.306][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:34.308][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:34.310][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:31:34.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:31:34.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:34.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:34.316][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-26 23:31:34.318][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-26 23:31:34.319][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:34.321][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:34.322][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-26 23:31:34.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-26 23:31:34.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:34.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:34.329][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 23:31:34.330][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 23:31:34.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:34.334][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:34.335][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 23:31:34.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 23:31:34.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:34.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:34.343][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:34.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:34.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:34.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:34.351][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:34.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:34.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:34.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:34.358][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:34.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:34.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:34.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:34.364][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:34.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:34.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:34.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:34.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:34.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:34.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:34.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:34.375][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:34.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:34.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:34.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:34.381][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:34.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:34.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:34.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:34.430][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:34.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:34.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:34.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:34.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:34.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:34.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:34.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:34.446][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:34.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:34.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:34.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:34.454][self$createEntryFromContent] Accession numbers: 4648.
biodb.TRACE[2024-06-26 23:31:34.456][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:34.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:34.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:34.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:34.461][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:34.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:34.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:34.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:34.466][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:34.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:34.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:34.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:34.472][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:34.473][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:34.475][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:34.485][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:34.487][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:34.488][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:34.489][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:34.491][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:34.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:34.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:34.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:34.496][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:34.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:34.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:34.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:34.511][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:34.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:34.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:34.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:34.516][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:34.517][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:34.518][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:34.531][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:34.533][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:34.534][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:34.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:34.537][private$loadEntries] Creating entries from ids [1]: "62447".
biodb.DEBUG[2024-06-26 23:31:34.538][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-26 23:31:34.540][cch$loadFileContent] Trying to load 1 files from cache: [1]: "62447".
biodb.TRACE[2024-06-26 23:31:34.542][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-26 23:31:34.544][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-26 23:31:34.545][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-26 23:31:34.546][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-26 23:31:34.548][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-26 23:31:34.549][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-26 23:31:34.552][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:34.553][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:34.554][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:34.564][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:34.566][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:34.567][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:34.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:34.572][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=62447".
biodb.DEBUG[2024-06-26 23:31:34.578][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-26 23:31:34.580][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-26 23:31:34.582][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=62447".
biodb.TRACE[2024-06-26 23:31:34.980][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=62447).
biodb.DEBUG[2024-06-26 23:31:35.347][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-26 23:31:35.350][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ceadc6ac0ce91f601616e22be7c76851.content"
biodb.TRACE[2024-06-26 23:31:35.355][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ceadc6ac0ce91f601616e22be7c76851.request"
biodb.TRACE[2024-06-26 23:31:35.359][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62447.xml"
biodb.DEBUG[2024-06-26 23:31:35.362][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-26 23:31:35.364][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-26 23:31:35.365][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-26 23:31:35.367][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:35.369][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:35.370][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:35.425][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:35.427][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:35.429][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:35.430][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:35.434][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:35.436][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:35.438][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:35.440][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:35.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:35.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:35.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:35.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:35.450][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-26 23:31:35.452][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-26 23:31:35.454][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:35.456][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:35.458][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-26 23:31:35.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-26 23:31:35.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:35.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:35.466][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 23:31:35.468][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 23:31:35.470][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:35.472][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:35.474][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 23:31:35.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 23:31:35.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:35.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:35.482][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 23:31:35.484][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 23:31:35.485][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:35.487][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:35.489][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 23:31:35.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 23:31:35.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:35.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:35.497][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 23:31:35.499][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 23:31:35.501][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:35.503][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:35.506][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 23:31:35.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 23:31:35.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:35.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:35.514][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:31:35.516][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:31:35.518][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:35.520][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:35.522][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-26 23:31:35.524][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:35.526][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:35.528][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:35.530][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-26 23:31:35.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:35.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:35.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:35.538][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:35.540][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:35.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:35.544][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:35.547][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:35.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:35.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:35.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:35.555][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:31:35.557][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:31:35.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:35.560][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:35.563][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:31:35.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:31:35.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:35.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:35.571][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-26 23:31:35.573][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-26 23:31:35.575][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:35.576][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:35.579][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-26 23:31:35.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-26 23:31:35.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:35.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:35.586][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 23:31:35.588][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 23:31:35.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:35.592][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:35.594][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 23:31:35.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 23:31:35.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:35.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:35.603][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:35.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:35.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:35.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:35.610][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:35.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:35.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:35.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:35.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:35.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:35.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:35.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:35.626][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:35.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:35.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:35.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:35.634][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:35.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:35.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:35.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:35.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:35.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:35.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:35.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:35.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:35.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:35.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:35.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:35.659][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:35.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:35.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:35.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:35.668][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:35.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:35.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:35.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:35.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:35.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:35.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:35.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:35.684][self$createEntryFromContent] Accession numbers: 62447.
biodb.TRACE[2024-06-26 23:31:35.687][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:35.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:35.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:35.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:35.695][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:35.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:35.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:35.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:35.704][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:35.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:35.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:35.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:35.760][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-26 23:31:35.765][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-26 23:31:35.766][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-26 23:31:35.769][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL%20NAMES&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-06-26 23:31:36.262][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL%20NAMES&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-06-26 23:31:36.770][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.INFO [2024-06-26 23:31:36.773][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649" for "chebi-0c5076ac2a43d16dbce503a44b09f649".
biodb.TRACE[2024-06-26 23:31:36.776][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content"
biodb.TRACE[2024-06-26 23:31:36.783][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.request"
biodb.DEBUG[2024-06-26 23:31:36.790][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:36.792][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:36.794][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:36.806][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:36.808][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:36.810][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:36.812][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:36.814][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:36.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:36.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:36.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:36.822][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:36.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:36.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:36.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:36.829][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:36.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:36.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:36.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:36.834][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:36.835][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:36.837][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:36.851][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:36.853][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:36.854][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:36.855][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:36.857][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:36.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:36.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:36.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:36.864][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:36.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:36.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:36.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:36.870][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:36.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:36.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:36.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:36.878][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:36.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:36.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:36.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:36.888][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:36.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:36.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:36.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:36.896][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:36.898][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:36.900][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:36.914][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:36.916][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:36.918][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:36.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:36.923][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:36.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:36.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:36.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:36.929][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:36.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:36.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:36.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:36.934][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:36.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:36.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:36.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:36.941][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:36.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:36.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:36.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:36.947][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:36.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:36.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:36.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:36.954][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:36.956][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:36.957][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:36.970][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:36.971][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:36.973][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:36.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:36.976][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:36.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:36.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:36.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:36.981][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:36.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:36.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:36.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:36.987][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:36.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:36.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:37.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:37.005][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:37.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:37.011][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:37.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:37.017][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:37.019][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:37.020][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:37.034][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:37.036][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:37.037][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:37.039][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:37.040][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:37.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:37.047][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:37.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:37.053][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:37.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:37.060][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:37.062][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:37.063][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:37.084][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:37.086][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:37.088][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:37.090][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:37.092][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:37.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:37.101][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:37.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:37.110][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:37.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:37.120][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:37.121][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:37.123][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:37.141][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:37.142][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:37.144][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:37.145][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:37.147][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:37.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:37.153][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:37.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:37.159][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:37.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:37.164][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:37.165][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:37.166][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:37.178][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:37.179][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:37.180][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:37.182][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:37.184][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:37.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:37.189][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:37.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:37.195][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:37.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:37.202][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:37.204][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:37.205][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:37.217][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:37.219][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:37.221][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:37.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:37.223][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:37.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:37.230][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:37.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:37.236][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:37.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:37.247][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:37.249][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:37.251][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:37.270][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:37.272][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:37.275][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:37.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:37.280][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:37.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:37.290][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:37.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:37.299][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:37.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:37.307][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:37.309][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:37.311][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:37.325][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:37.326][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:37.327][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:37.329][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:37.330][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:37.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:37.335][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:37.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:37.340][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:37.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:37.345][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:37.347][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:37.348][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:37.355][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:37.356][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:37.357][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:37.358][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:37.360][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:37.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:37.365][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:37.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:37.370][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:37.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:37.375][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:37.377][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:37.378][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:37.386][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:37.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:37.389][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:37.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:37.391][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:37.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:37.397][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:37.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:37.402][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:37.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:37.407][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:37.408][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:37.410][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:37.418][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:37.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:37.421][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:37.422][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:37.423][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:37.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:37.429][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:37.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:37.434][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:37.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:37.440][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:37.442][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:37.443][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:37.455][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:37.456][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:37.458][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:37.459][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:37.460][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:37.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:37.466][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:37.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:37.471][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:37.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:37.479][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:37.480][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:37.482][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:37.494][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:37.495][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:37.496][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:37.497][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:37.499][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:37.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:37.504][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:37.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:37.509][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:37.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:37.514][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:37.515][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:37.516][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:37.524][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:37.526][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:37.527][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:37.528][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:37.529][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:37.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:37.535][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:37.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:37.542][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:37.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:37.549][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:37.551][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:37.553][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:37.566][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:37.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:37.569][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:37.570][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:37.572][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:37.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:37.576][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:37.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:37.582][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:37.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:37.587][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:37.588][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:37.589][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:37.605][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:37.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:37.608][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:37.610][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:37.612][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:37.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:37.617][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:37.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:37.623][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:37.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:37.629][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:37.630][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:37.632][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:37.647][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:37.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:37.651][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:37.665][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:37.668][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:37.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:37.677][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:37.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:37.684][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:37.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:37.756][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-26 23:31:37.762][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-26 23:31:37.766][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-06-26 23:31:37.769][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-26 23:31:37.774][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-06-26 23:31:37.779][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:37.781][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:37.783][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:37.799][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:37.801][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:37.803][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:37.805][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:37.808][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:37.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:37.816][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:37.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:37.824][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:37.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:37.832][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:37.833][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:37.835][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:37.850][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:37.852][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:37.854][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:37.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:37.858][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:37.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:37.866][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:37.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:37.875][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:37.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:37.885][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:37.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:37.893][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:37.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:37.902][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:37.904][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:37.906][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:37.934][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:37.936][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:37.937][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:37.938][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:37.940][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:37.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:37.945][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:37.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:37.954][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:37.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:37.960][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:37.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:37.967][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:37.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:37.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:37.972][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:37.974][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:37.975][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:37.995][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:37.997][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:37.998][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:37.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:38.001][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:38.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:38.006][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:38.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:38.012][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:38.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:38.017][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:38.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:38.022][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:38.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:38.027][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:38.028][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:38.030][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:38.039][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:38.040][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:38.041][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:38.042][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:38.044][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:38.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:38.049][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:38.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:38.057][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:38.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:38.066][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:38.068][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:38.070][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:38.112][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:38.115][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:38.117][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:38.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:38.121][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:38.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:38.130][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:38.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:38.138][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:38.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:38.147][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:38.148][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:38.150][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:38.167][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:38.169][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:38.170][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:38.171][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:38.173][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:38.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:38.178][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:38.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:38.184][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:38.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:38.189][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:38.190][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:38.191][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:38.205][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:38.207][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:38.208][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:38.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:38.211][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:38.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:38.217][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:38.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:38.222][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:38.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:38.228][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:38.229][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:38.230][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:38.243][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:38.245][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:38.246][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:38.247][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:38.249][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:38.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:38.254][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:38.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:38.259][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:38.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:38.264][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:38.265][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:38.266][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:38.279][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:38.280][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:38.282][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:38.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:38.285][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:38.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:38.293][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:38.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:38.301][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:38.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:38.309][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:38.311][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:38.313][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:38.332][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:38.334][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:38.336][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:38.338][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:38.340][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:38.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:38.350][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:38.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:38.358][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:38.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:38.366][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:38.368][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:38.370][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:38.388][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:38.390][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:38.391][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:38.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:38.394][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:38.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:38.399][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:38.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:38.405][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:38.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:38.410][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:38.412][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:38.413][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:38.422][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:38.423][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:38.424][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:38.425][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:38.427][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:38.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:38.432][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:38.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:38.438][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:38.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:38.448][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:38.450][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:38.451][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:38.462][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:38.464][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:38.465][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:38.466][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:38.468][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:38.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:38.475][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:38.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:38.484][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:38.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:38.492][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:38.494][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:38.495][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:38.508][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:38.509][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:38.510][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:38.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:38.513][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:38.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:38.522][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:38.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:38.531][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:38.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:38.540][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:38.541][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:38.544][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:38.571][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:38.573][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:38.575][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:38.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:38.580][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:38.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:38.589][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:38.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:38.597][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:38.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:38.606][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:38.608][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:38.610][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:38.624][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:38.626][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:38.627][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:38.628][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:38.630][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:38.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:38.637][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:38.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:38.642][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:38.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:38.648][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:38.649][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:38.650][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:38.663][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:38.664][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:38.665][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:38.667][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:38.668][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:38.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:38.676][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:38.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:38.684][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:38.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:38.692][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:38.694][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:38.695][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:38.710][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:38.712][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:38.714][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:38.716][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:38.718][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:38.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:38.727][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:38.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:38.735][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:38.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:38.743][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:38.744][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:38.746][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:38.757][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:38.758][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:38.759][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:38.760][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:38.762][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:38.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:38.767][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:38.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:38.775][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:38.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:38.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:38.815][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-06-26 23:31:38.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-06-26 23:31:38.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:38.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-06-26 23:31:38.856][biodb::testThat]
biodb.INFO [2024-06-26 23:31:38.858][biodb::testThat] Running test function test_annotateMzValues_input_vector (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2024-06-26 23:31:38.860][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-26 23:31:38.862][biodb::testThat]
biodb.TRACE[2024-06-26 23:31:38.869][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-26 23:31:38.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-26 23:31:38.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:38.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:38.877][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:38.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:38.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:38.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:38.886][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:38.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:38.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:38.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:38.894][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:38.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:38.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:38.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:38.903][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:38.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:38.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:38.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:38.915][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:38.917][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:38.919][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:38.942][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:38.944][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:38.946][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:38.948][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:38.954][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-26 23:31:38.960][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-26 23:31:38.961][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-26 23:31:38.963][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-06-26 23:31:39.343][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-06-26 23:31:39.701][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-26 23:31:39.704][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content"
biodb.TRACE[2024-06-26 23:31:39.710][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.request"
biodb.DEBUG[2024-06-26 23:31:39.714][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:39.715][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:39.716][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:39.730][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:39.731][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:39.733][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:39.735][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:39.737][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:39.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:39.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:39.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:39.746][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:39.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:39.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:39.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:39.753][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:39.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:39.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:39.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:39.760][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-26 23:31:39.764][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-26 23:31:39.765][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-26 23:31:39.767][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-06-26 23:31:40.116][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-06-26 23:31:40.473][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-26 23:31:40.477][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content"
biodb.TRACE[2024-06-26 23:31:40.483][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.request"
biodb.DEBUG[2024-06-26 23:31:40.489][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:40.491][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:40.494][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:40.511][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:40.514][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:40.516][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:40.518][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:40.519][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:40.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:40.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:40.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:40.525][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:40.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:40.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:40.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:40.531][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:40.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:40.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:40.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:40.537][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:40.538][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:40.539][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:40.561][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:40.563][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:40.565][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:40.567][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:40.570][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:40.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:40.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:40.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:40.577][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:40.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:40.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:40.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:40.583][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:40.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:40.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:40.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:40.592][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-26 23:31:40.594][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:40.596][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:40.598][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:41.735][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:41.738][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:41.740][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:41.742][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:41.744][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:41.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:41.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:41.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:41.753][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:41.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:41.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:41.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:41.760][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-26 23:31:41.762][private$selectFields]
biodb.TRACE[2024-06-26 23:31:41.764][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-26 23:31:41.766][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-26 23:31:41.768][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-26 23:31:41.770][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:41.772][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:41.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:41.785][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:41.791][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:41.793][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:41.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:41.796][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:41.797][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-26 23:31:41.798][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-26 23:31:41.800][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:41.801][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:41.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:41.803][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:41.805][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-26 23:31:41.807][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:41.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:41.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:41.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:41.815][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:41.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:41.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:41.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:41.822][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:41.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:41.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:41.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:41.845][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2024-06-26 23:31:41.847][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:41.849][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:41.852][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:41.863][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:41.865][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:41.867][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:41.869][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:41.872][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:41.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:41.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:41.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:41.881][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:41.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:41.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:41.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:41.889][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-26 23:31:41.891][private$selectFields]
biodb.TRACE[2024-06-26 23:31:41.893][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-26 23:31:41.895][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-26 23:31:41.897][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-26 23:31:41.899][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:41.901][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:41.903][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:41.905][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:41.907][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:41.909][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:41.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:41.912][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:41.914][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-26 23:31:41.916][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-26 23:31:41.917][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:41.919][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:41.921][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:41.924][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:41.926][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-26 23:31:41.927][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:41.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:41.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:41.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:41.936][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:41.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:41.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:41.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:41.942][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:41.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:41.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:41.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:41.948][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-06-26 23:31:41.949][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:41.951][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:41.952][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:41.961][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:41.962][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:41.963][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:41.965][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:41.967][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:41.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:41.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:41.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:41.976][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:41.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:41.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:41.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:41.983][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-26 23:31:41.984][private$selectFields]
biodb.TRACE[2024-06-26 23:31:41.986][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-26 23:31:41.988][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-26 23:31:41.989][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-26 23:31:41.991][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:41.992][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:41.993][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:41.995][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:41.997][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:41.998][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:41.999][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:42.001][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:42.002][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-26 23:31:42.004][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-26 23:31:42.005][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:42.006][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:42.007][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:42.009][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:42.010][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-26 23:31:42.012][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:42.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:42.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:42.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:42.017][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:42.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:42.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:42.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:42.023][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:42.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:42.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:42.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:42.032][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2024-06-26 23:31:42.034][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-26 23:31:42.036][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-06-26 23:31:42.069][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:42.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:42.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:42.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:42.075][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:42.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:42.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:42.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:42.083][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:42.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:42.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:42.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:42.089][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:42.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:42.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:42.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:42.172][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:42.174][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:42.177][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:42.194][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:42.196][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:42.199][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:42.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:42.205][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-26 23:31:42.210][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-26 23:31:42.212][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-26 23:31:42.215][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-06-26 23:31:42.605][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-06-26 23:31:42.960][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-26 23:31:42.963][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content"
biodb.TRACE[2024-06-26 23:31:42.969][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.request"
biodb.DEBUG[2024-06-26 23:31:42.974][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-26 23:31:42.978][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-26 23:31:42.979][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-26 23:31:42.981][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-06-26 23:31:43.330][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-06-26 23:31:43.689][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-26 23:31:43.692][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content"
biodb.TRACE[2024-06-26 23:31:43.697][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.request"
biodb.DEBUG[2024-06-26 23:31:43.702][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:43.703][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:43.704][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:43.746][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:43.748][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:43.750][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:43.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:43.755][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:43.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:43.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:43.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:43.762][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:43.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:43.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:43.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:43.767][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:43.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:43.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:43.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:43.774][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:43.776][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:43.777][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:43.794][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:43.796][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:43.797][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:43.798][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:43.800][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:43.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:43.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:43.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:43.805][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:43.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:43.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:43.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:43.810][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:43.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:43.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:43.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:43.815][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:43.816][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:43.818][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:43.825][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:43.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:43.827][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:43.829][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:43.830][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:43.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:43.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:43.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:43.836][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:43.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:43.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:43.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:43.841][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:43.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:43.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:43.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:43.876][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-26 23:31:43.900][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:43.902][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:43.904][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:43.919][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:43.920][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:43.921][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:43.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:43.924][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:43.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:43.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:43.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:43.929][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:43.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:43.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:43.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:43.934][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-26 23:31:43.936][private$selectFields]
biodb.TRACE[2024-06-26 23:31:43.937][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-26 23:31:43.938][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-26 23:31:43.939][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-26 23:31:43.940][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:43.942][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:43.943][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:43.944][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:43.946][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:43.947][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:43.948][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:43.949][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:43.951][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-26 23:31:43.952][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-26 23:31:43.953][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:43.955][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:43.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:43.957][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:43.959][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-26 23:31:43.960][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:43.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:43.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:43.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:43.965][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:43.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:43.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:43.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:43.970][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:43.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:43.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:43.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:43.976][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-06-26 23:31:43.978][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:43.979][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:43.980][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:43.999][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:44.001][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:44.002][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:44.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:44.016][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:44.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:44.021][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:44.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:44.045][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-26 23:31:44.046][private$selectFields]
biodb.TRACE[2024-06-26 23:31:44.048][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-26 23:31:44.049][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-26 23:31:44.050][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-26 23:31:44.052][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.053][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:44.056][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:44.057][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.058][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:44.061][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:44.062][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-26 23:31:44.072][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-26 23:31:44.073][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.075][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:44.077][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:44.078][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-26 23:31:44.080][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:44.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:44.085][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:44.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:44.090][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:44.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:44.096][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-06-26 23:31:44.097][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:44.098][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:44.099][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:44.114][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:44.116][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:44.117][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:44.118][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:44.120][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:44.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:44.125][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:44.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:44.132][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-26 23:31:44.133][private$selectFields]
biodb.TRACE[2024-06-26 23:31:44.134][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-26 23:31:44.135][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-26 23:31:44.136][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-26 23:31:44.138][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.139][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.140][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:44.141][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:44.143][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.144][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:44.147][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:44.148][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-26 23:31:44.150][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-26 23:31:44.151][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.152][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:44.155][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:44.156][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-26 23:31:44.157][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:44.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:44.163][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:44.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:44.168][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:44.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:44.173][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-06-26 23:31:44.175][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-26 23:31:44.176][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-06-26 23:31:44.196][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-06-26 23:31:44.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-06-26 23:31:44.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:44.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-06-26 23:31:44.216][biodb::testThat]
biodb.INFO [2024-06-26 23:31:44.217][biodb::testThat] Running test function test_annotateMzValues_ppm_tol (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2024-06-26 23:31:44.219][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-26 23:31:44.220][biodb::testThat]
biodb.TRACE[2024-06-26 23:31:44.224][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-26 23:31:44.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-26 23:31:44.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:44.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:44.232][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:44.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:44.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:44.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:44.238][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:44.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:44.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:44.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:44.244][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:44.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:44.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:44.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:44.249][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:44.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:44.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:44.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:44.257][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:44.258][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:44.259][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:44.274][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:44.276][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:44.278][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:44.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:44.283][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-26 23:31:44.288][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-26 23:31:44.290][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-06-26 23:31:44.291][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-26 23:31:44.294][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-06-26 23:31:44.297][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:44.298][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:44.299][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:44.307][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:44.309][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:44.310][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:44.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:44.320][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:44.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:44.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:44.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:44.325][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:44.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:44.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:44.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:44.332][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:44.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:44.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:44.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:44.341][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-26 23:31:44.347][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-26 23:31:44.349][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-06-26 23:31:44.351][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-26 23:31:44.353][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-06-26 23:31:44.356][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:44.357][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:44.358][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:44.374][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:44.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:44.378][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:44.379][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:44.381][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:44.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:44.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:44.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:44.388][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:44.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:44.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:44.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:44.395][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:44.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:44.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:44.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:44.403][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:44.405][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:44.407][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:44.419][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:44.421][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:44.422][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:44.423][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:44.424][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:44.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:44.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:44.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:44.429][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:44.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:44.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:44.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:44.434][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:44.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:44.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:44.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:44.441][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-26 23:31:44.443][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:44.444][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:44.446][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:44.455][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:44.457][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:44.459][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:44.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:44.469][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:44.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:44.475][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:44.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:44.480][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-26 23:31:44.482][private$selectFields]
biodb.TRACE[2024-06-26 23:31:44.484][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-26 23:31:44.486][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-26 23:31:44.488][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-26 23:31:44.490][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.492][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.494][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:44.496][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:44.498][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.500][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.502][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:44.504][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:44.506][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-26 23:31:44.509][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-26 23:31:44.511][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.513][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.515][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:44.517][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:44.519][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-26 23:31:44.521][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:44.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:44.529][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:44.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:44.538][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:44.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:44.547][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2024-06-26 23:31:44.549][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:44.551][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:44.552][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:44.570][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:44.571][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:44.573][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:44.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:44.577][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:44.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:44.585][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:44.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:44.592][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-26 23:31:44.593][private$selectFields]
biodb.TRACE[2024-06-26 23:31:44.594][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-26 23:31:44.595][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-26 23:31:44.597][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-26 23:31:44.598][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.600][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.601][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:44.602][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:44.604][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.605][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:44.608][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:44.609][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-26 23:31:44.610][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-26 23:31:44.612][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.613][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.614][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:44.616][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:44.617][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-26 23:31:44.618][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:44.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:44.624][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:44.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:44.629][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:44.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:44.634][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-06-26 23:31:44.636][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:44.637][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:44.638][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:44.646][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:44.647][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:44.649][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:44.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:44.652][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:44.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:44.660][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:44.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:44.668][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-26 23:31:44.670][private$selectFields]
biodb.TRACE[2024-06-26 23:31:44.672][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-26 23:31:44.674][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-26 23:31:44.676][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-26 23:31:44.678][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.680][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.682][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:44.684][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:44.686][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.688][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.690][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:44.691][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:44.693][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-26 23:31:44.695][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-26 23:31:44.697][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.700][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:44.703][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:44.705][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-26 23:31:44.707][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:44.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:44.715][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:44.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:44.723][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:44.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:44.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:44.732][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2024-06-26 23:31:44.734][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-26 23:31:44.736][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-06-26 23:31:44.756][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:44.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:44.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:44.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:44.765][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:44.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:44.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:44.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:44.774][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:44.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:44.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:44.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:44.782][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:44.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:44.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:44.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:44.794][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:44.796][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:44.798][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:44.809][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:44.812][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:44.814][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:44.815][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:44.821][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-26 23:31:44.827][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-26 23:31:44.830][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-06-26 23:31:44.833][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-26 23:31:44.836][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-06-26 23:31:44.842][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-26 23:31:44.849][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-26 23:31:44.852][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-06-26 23:31:44.854][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-26 23:31:44.861][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-06-26 23:31:44.866][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:44.868][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:44.870][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:44.881][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:44.883][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:44.885][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:44.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:44.888][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:44.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:44.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:44.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:44.893][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:44.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:44.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:44.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:44.899][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:44.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:44.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:44.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:44.907][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:44.909][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:44.911][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:44.926][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:44.928][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:44.930][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:44.932][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:44.934][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:44.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:44.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:44.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:44.941][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:44.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:44.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:44.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:44.946][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:44.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:44.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:44.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:44.954][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:44.955][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:44.956][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:44.967][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:44.969][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:44.971][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:44.972][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:44.974][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:44.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:44.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:44.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:44.987][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:44.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:44.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:44.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:44.992][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:44.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:44.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:44.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:44.997][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-26 23:31:44.999][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:45.000][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:45.001][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:45.032][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:45.034][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:45.036][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:45.037][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:45.039][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:45.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:45.045][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:45.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:45.050][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-26 23:31:45.051][private$selectFields]
biodb.TRACE[2024-06-26 23:31:45.053][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-26 23:31:45.054][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-26 23:31:45.055][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-26 23:31:45.056][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.058][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:45.061][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:45.062][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.063][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:45.066][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:45.067][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-26 23:31:45.069][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-26 23:31:45.070][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.072][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.073][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:45.074][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:45.076][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-26 23:31:45.077][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:45.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:45.083][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:45.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:45.089][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:45.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:45.096][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-06-26 23:31:45.097][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:45.098][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:45.099][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:45.114][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:45.115][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:45.117][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:45.118][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:45.119][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:45.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:45.124][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:45.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:45.129][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-26 23:31:45.131][private$selectFields]
biodb.TRACE[2024-06-26 23:31:45.132][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-26 23:31:45.133][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-26 23:31:45.134][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-26 23:31:45.136][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.137][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.138][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:45.140][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:45.141][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.142][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.144][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:45.145][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:45.147][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-26 23:31:45.148][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-26 23:31:45.149][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.151][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.152][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:45.154][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:45.155][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-26 23:31:45.156][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:45.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:45.162][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:45.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:45.168][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:45.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:45.176][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-06-26 23:31:45.177][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:45.179][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:45.180][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:45.195][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:45.196][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:45.197][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:45.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:45.200][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:45.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:45.205][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:45.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:45.210][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-26 23:31:45.212][private$selectFields]
biodb.TRACE[2024-06-26 23:31:45.213][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-26 23:31:45.214][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-26 23:31:45.215][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-26 23:31:45.217][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.219][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.221][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:45.223][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:45.225][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.226][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.228][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:45.229][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:45.230][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-26 23:31:45.232][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-26 23:31:45.233][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.234][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:45.237][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:45.238][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-26 23:31:45.240][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:45.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:45.247][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:45.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:45.252][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:45.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:45.257][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-06-26 23:31:45.259][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-26 23:31:45.260][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-06-26 23:31:45.274][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-06-26 23:31:45.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-06-26 23:31:45.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:45.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-06-26 23:31:45.290][biodb::testThat]
biodb.INFO [2024-06-26 23:31:45.292][biodb::testThat] Running test function test_annotateMzValues_input_dataframe_untouched (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2024-06-26 23:31:45.294][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-26 23:31:45.297][biodb::testThat]
biodb.TRACE[2024-06-26 23:31:45.302][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-26 23:31:45.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-26 23:31:45.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:45.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:45.311][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:45.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:45.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:45.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:45.320][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:45.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:45.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:45.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:45.329][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:45.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:45.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:45.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:45.338][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:45.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:45.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:45.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:45.353][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:45.354][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:45.356][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:45.369][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:45.372][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:45.374][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:45.376][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:45.381][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-26 23:31:45.387][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-26 23:31:45.390][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-06-26 23:31:45.393][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-26 23:31:45.396][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-06-26 23:31:45.401][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:45.403][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:45.405][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:45.417][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:45.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:45.421][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:45.423][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:45.425][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:45.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:45.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:45.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:45.431][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:45.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:45.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:45.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:45.436][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:45.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:45.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:45.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:45.447][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-26 23:31:45.451][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-26 23:31:45.452][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-06-26 23:31:45.454][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-26 23:31:45.456][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-06-26 23:31:45.459][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:45.460][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:45.461][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:45.471][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:45.473][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:45.475][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:45.477][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:45.479][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:45.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:45.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:45.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:45.484][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:45.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:45.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:45.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:45.492][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:45.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:45.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:45.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:45.500][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:45.501][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:45.502][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:45.512][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:45.514][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:45.516][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:45.518][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:45.520][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:45.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:45.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:45.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:45.528][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:45.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:45.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:45.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:45.534][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:45.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:45.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:45.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:45.539][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-26 23:31:45.541][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:45.542][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:45.543][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:45.552][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:45.554][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:45.556][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:45.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:45.560][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:45.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:45.567][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:45.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:45.573][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-26 23:31:45.575][private$selectFields]
biodb.TRACE[2024-06-26 23:31:45.577][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-26 23:31:45.579][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-26 23:31:45.581][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-26 23:31:45.583][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.585][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.587][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:45.589][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:45.592][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.594][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:45.597][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:45.599][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-26 23:31:45.600][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-26 23:31:45.601][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.603][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:45.606][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:45.609][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-26 23:31:45.619][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:45.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:45.625][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:45.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:45.630][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:45.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:45.637][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2024-06-26 23:31:45.639][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:45.640][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:45.642][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:45.658][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:45.660][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:45.661][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:45.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:45.664][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:45.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:45.669][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:45.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:45.675][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-26 23:31:45.676][private$selectFields]
biodb.TRACE[2024-06-26 23:31:45.677][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-26 23:31:45.679][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-26 23:31:45.680][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-26 23:31:45.681][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.683][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:45.685][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:45.687][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.688][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:45.691][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:45.692][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-26 23:31:45.693][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-26 23:31:45.694][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.697][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:45.702][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:45.704][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-26 23:31:45.706][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:45.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:45.711][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:45.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:45.717][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:45.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:45.722][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-06-26 23:31:45.723][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:45.725][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:45.726][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:45.734][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:45.735][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:45.737][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:45.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:45.740][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:45.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:45.745][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:45.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:45.750][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-26 23:31:45.751][private$selectFields]
biodb.TRACE[2024-06-26 23:31:45.752][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-26 23:31:45.753][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-26 23:31:45.755][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-26 23:31:45.756][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.758][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.759][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:45.761][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:45.762][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.763][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.765][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:45.766][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:45.767][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-26 23:31:45.768][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-26 23:31:45.770][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.771][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.772][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:45.773][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:45.775][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-26 23:31:45.776][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:45.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:45.783][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:45.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:45.791][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:45.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:45.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:45.798][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2024-06-26 23:31:45.800][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-26 23:31:45.801][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-06-26 23:31:45.870][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:45.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:45.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:45.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:45.879][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:45.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:45.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:45.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:45.886][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:45.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:45.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:45.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:45.894][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:45.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:45.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:45.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:45.904][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:45.905][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:45.907][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:45.921][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:45.923][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:45.924][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:45.925][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:45.928][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-26 23:31:45.932][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-26 23:31:45.936][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-06-26 23:31:45.937][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-26 23:31:45.940][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-06-26 23:31:45.944][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-06-26 23:31:45.947][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-26 23:31:45.950][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-06-26 23:31:45.952][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-26 23:31:45.954][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-06-26 23:31:45.957][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:45.958][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:45.959][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:45.984][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:45.986][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:45.988][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:45.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:45.992][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:45.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:45.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:45.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:46.000][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:46.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:46.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:46.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:46.006][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:46.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:46.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:46.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:46.011][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:46.012][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:46.014][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:46.028][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:46.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:46.031][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:46.032][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:46.033][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:46.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:46.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:46.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:46.039][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:46.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:46.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:46.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:46.044][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:46.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:46.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:46.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:46.049][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:46.051][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:46.053][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:46.064][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:46.066][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:46.067][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:46.068][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:46.070][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:46.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:46.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:46.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:46.075][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:46.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:46.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:46.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:46.080][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:46.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:46.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:46.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:46.086][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-26 23:31:46.088][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:46.089][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:46.090][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:46.106][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:46.108][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:46.110][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:46.112][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:46.115][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:46.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:46.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:46.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:46.124][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:46.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:46.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:46.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:46.132][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-26 23:31:46.133][private$selectFields]
biodb.TRACE[2024-06-26 23:31:46.134][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-26 23:31:46.136][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-26 23:31:46.138][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-26 23:31:46.140][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:46.142][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:46.144][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:46.146][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:46.148][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:46.150][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:46.152][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:46.154][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:46.156][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-26 23:31:46.158][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-26 23:31:46.160][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:46.162][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:46.164][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:46.166][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:46.168][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-26 23:31:46.171][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:46.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:46.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:46.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:46.179][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:46.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:46.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:46.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:46.187][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:46.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:46.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:46.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:46.196][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-06-26 23:31:46.198][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:46.200][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:46.202][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:46.214][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:46.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:46.218][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:46.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:46.223][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:46.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:46.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:46.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:46.232][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:46.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:46.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:46.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:46.240][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-26 23:31:46.242][private$selectFields]
biodb.TRACE[2024-06-26 23:31:46.244][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-26 23:31:46.246][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-26 23:31:46.248][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-26 23:31:46.250][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:46.253][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:46.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:46.257][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:46.259][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:46.261][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:46.263][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:46.265][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:46.267][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-26 23:31:46.269][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-26 23:31:46.271][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:46.273][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:46.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:46.277][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:46.279][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-26 23:31:46.281][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:46.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:46.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:46.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:46.299][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:46.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:46.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:46.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:46.305][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:46.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:46.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:46.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:46.311][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-06-26 23:31:46.312][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:46.313][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:46.314][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:46.397][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:46.398][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:46.399][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:46.400][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:46.402][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:46.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:46.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:46.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:46.408][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:46.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:46.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:46.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:46.414][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-26 23:31:46.415][private$selectFields]
biodb.TRACE[2024-06-26 23:31:46.416][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-26 23:31:46.418][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-26 23:31:46.419][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-26 23:31:46.421][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:46.422][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:46.423][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:46.425][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:46.426][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:46.427][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:46.429][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:46.430][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:46.431][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-26 23:31:46.433][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-06-26 23:31:46.434][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:46.435][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:46.437][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:46.438][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:46.439][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-06-26 23:31:46.441][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:46.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:46.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:46.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:46.446][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:46.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:46.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:46.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:46.451][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:46.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:46.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:46.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:46.457][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-06-26 23:31:46.458][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-26 23:31:46.460][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-06-26 23:31:46.494][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-06-26 23:31:46.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-06-26 23:31:46.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:46.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-06-26 23:31:46.512][biodb::testThat]
biodb.INFO [2024-06-26 23:31:46.515][biodb::testThat] Running test function test.wrong.entry (" Wrong entry gives NULL ").
biodb.INFO [2024-06-26 23:31:46.517][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-26 23:31:46.519][biodb::testThat]
biodb.DEBUG[2024-06-26 23:31:46.523][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2024-06-26 23:31:46.525][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-26 23:31:46.529][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2024-06-26 23:31:46.532][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-26 23:31:46.533][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-26 23:31:46.535][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-26 23:31:46.537][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-26 23:31:46.538][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-26 23:31:46.540][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-26 23:31:46.543][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:46.545][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:46.547][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:46.556][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:46.558][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:46.559][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:46.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:46.562][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=WRONGA".
biodb.DEBUG[2024-06-26 23:31:46.567][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-26 23:31:46.569][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-26 23:31:46.571][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=WRONGA".
biodb.TRACE[2024-06-26 23:31:46.931][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=WRONGA).
biodb.DEBUG[2024-06-26 23:31:47.291][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-26 23:31:47.295][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b5b4e4941cdc7bc8ff5e29f921c1e9db.content"
biodb.TRACE[2024-06-26 23:31:47.303][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b5b4e4941cdc7bc8ff5e29f921c1e9db.request"
biodb.TRACE[2024-06-26 23:31:47.308][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/WRONGA.xml"
biodb.DEBUG[2024-06-26 23:31:47.312][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-26 23:31:47.314][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-26 23:31:47.317][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-26 23:31:47.320][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:47.321][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:47.323][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:47.340][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:47.342][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:47.343][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:47.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:47.349][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:47.352][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:47.354][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:47.356][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:47.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:47.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:47.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:47.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:47.368][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-26 23:31:47.370][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-26 23:31:47.372][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:47.374][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:47.377][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 23:31:47.379][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 23:31:47.381][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:47.382][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:47.384][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 23:31:47.385][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 23:31:47.387][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:47.388][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:47.389][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 23:31:47.391][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 23:31:47.393][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:47.394][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:47.397][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:31:47.399][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:31:47.401][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:47.403][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:47.406][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-26 23:31:47.408][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:47.410][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:47.412][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:47.415][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:47.417][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:47.419][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:47.421][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:47.424][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:31:47.426][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:31:47.428][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:47.430][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:47.433][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-26 23:31:47.435][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-26 23:31:47.437][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:47.439][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:47.442][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 23:31:47.444][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 23:31:47.446][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:47.448][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:47.450][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:47.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:47.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:47.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:47.457][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:47.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:47.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:47.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:47.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:47.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:47.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:47.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:47.469][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:47.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:47.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:47.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:47.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:47.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:47.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:47.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:47.485][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:47.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:47.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:47.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:47.492][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:47.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:47.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:47.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:47.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:47.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:47.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:47.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:47.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:47.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:47.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:47.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:47.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:47.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:47.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:47.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:47.555][self$createEntryFromContent] Accession numbers: .
biodb.DEBUG[2024-06-26 23:31:47.557][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2024-06-26 23:31:47.585][biodb::testThat]
biodb.INFO [2024-06-26 23:31:47.587][biodb::testThat] Running test function test.wrong.entry.among.good.ones (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2024-06-26 23:31:47.589][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-26 23:31:47.591][biodb::testThat]
biodb.DEBUG[2024-06-26 23:31:47.618][function(conn, opt)] IDS: [4]: "WRONGB, 15440, 2528, 7799"
biodb.DEBUG[2024-06-26 23:31:47.620][private$loadEntries] Creating entries from ids [3]: "WRONGB, 2528, 7799".
biodb.DEBUG[2024-06-26 23:31:47.622][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)...
biodb.TRACE[2024-06-26 23:31:47.624][cch$loadFileContent] Trying to load 3 files from cache: [3]: "WRONGB, 2528, 7799".
biodb.TRACE[2024-06-26 23:31:47.626][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2024-06-26 23:31:47.628][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-26 23:31:47.629][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-26 23:31:47.631][conn$getEntryContent] 3 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-26 23:31:47.632][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-26 23:31:47.633][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-26 23:31:47.638][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:47.639][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:47.640][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:47.653][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:47.654][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:47.655][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:47.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:47.659][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=WRONGB".
biodb.DEBUG[2024-06-26 23:31:47.662][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-26 23:31:47.664][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-26 23:31:47.667][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=WRONGB".
biodb.TRACE[2024-06-26 23:31:48.022][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=WRONGB).
biodb.DEBUG[2024-06-26 23:31:48.374][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-26 23:31:48.378][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/32348f2b7cfb460a97c8a8aa145f239f.content"
biodb.TRACE[2024-06-26 23:31:48.385][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/32348f2b7cfb460a97c8a8aa145f239f.request"
biodb.DEBUG[2024-06-26 23:31:48.390][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:48.391][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:48.393][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:48.405][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:48.416][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:48.417][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:48.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:48.421][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
biodb.DEBUG[2024-06-26 23:31:48.426][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-26 23:31:48.429][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-26 23:31:48.431][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
biodb.TRACE[2024-06-26 23:31:48.780][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528).
biodb.DEBUG[2024-06-26 23:31:49.138][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-26 23:31:49.141][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65267cab26ad2d71ed08b12751f9bef2.content"
biodb.TRACE[2024-06-26 23:31:49.146][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65267cab26ad2d71ed08b12751f9bef2.request"
biodb.DEBUG[2024-06-26 23:31:49.148][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:49.150][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:49.152][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:49.166][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:49.167][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:49.169][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:49.170][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:49.172][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
biodb.DEBUG[2024-06-26 23:31:49.177][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-26 23:31:49.179][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-26 23:31:49.180][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
biodb.TRACE[2024-06-26 23:31:49.525][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799).
biodb.DEBUG[2024-06-26 23:31:49.873][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-26 23:31:49.878][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/07eb1d5438367a7b1616709944d88b07.content"
biodb.TRACE[2024-06-26 23:31:49.885][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/07eb1d5438367a7b1616709944d88b07.request"
biodb.TRACE[2024-06-26 23:31:49.891][private$doSaveContentToFile] Saving to cache [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/WRONGB.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2528.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7799.xml"
biodb.DEBUG[2024-06-26 23:31:49.898][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-26 23:31:49.901][self$createEntryFromContent] Creating ChEBI entries from 3 content(s).
biodb.DEBUG[2024-06-26 23:31:49.903][self$createEntryFromContent] Parsing 3 ChEBI entries.
biodb.DEBUG[2024-06-26 23:31:49.907][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:49.909][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:49.911][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:49.926][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:49.927][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:49.929][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:49.930][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:49.933][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:49.935][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:49.936][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:49.937][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:49.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:49.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:49.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:49.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:49.946][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-26 23:31:49.948][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-26 23:31:49.950][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:49.952][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:49.955][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 23:31:49.957][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 23:31:49.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:49.961][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:49.964][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 23:31:49.966][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 23:31:49.968][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:49.969][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:49.971][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 23:31:49.973][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 23:31:49.975][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:49.977][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:49.980][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:31:49.982][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:31:49.984][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:49.986][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:49.988][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-26 23:31:49.991][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:49.993][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:49.995][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:49.997][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:49.999][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:50.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.003][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.006][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:31:50.008][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:31:50.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.012][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.015][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-26 23:31:50.017][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-26 23:31:50.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.021][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.024][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 23:31:50.026][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 23:31:50.028][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.029][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.031][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:50.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:50.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.036][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:50.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:50.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:50.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:50.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:50.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:50.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:50.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:50.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:50.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:50.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:50.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:50.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:50.067][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:50.068][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:50.069][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:50.088][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:50.090][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:50.092][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:50.094][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:50.098][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:50.100][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:50.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.104][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:50.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:50.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.115][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-26 23:31:50.117][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-26 23:31:50.119][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.121][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.124][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-26 23:31:50.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-26 23:31:50.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.132][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 23:31:50.134][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 23:31:50.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.138][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.141][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 23:31:50.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 23:31:50.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.149][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 23:31:50.151][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 23:31:50.153][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.155][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.158][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 23:31:50.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 23:31:50.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.166][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 23:31:50.168][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 23:31:50.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.172][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.174][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 23:31:50.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 23:31:50.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.182][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:31:50.185][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:31:50.187][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.188][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.191][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:31:50.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:31:50.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.200][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-26 23:31:50.202][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:50.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.205][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.208][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-26 23:31:50.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:50.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.213][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:50.215][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:50.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.217][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.219][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:50.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:50.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.224][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:31:50.225][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:31:50.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.228][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.229][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:31:50.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:31:50.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.235][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-26 23:31:50.236][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-26 23:31:50.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.238][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.240][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-26 23:31:50.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-26 23:31:50.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.245][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 23:31:50.246][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 23:31:50.248][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.249][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.250][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 23:31:50.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 23:31:50.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.256][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:50.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:50.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.261][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:50.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:50.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:50.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:50.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.271][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:50.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:50.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.276][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:50.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:50.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:50.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:50.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:50.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:50.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:50.299][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:50.300][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:50.301][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:50.308][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:50.310][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:50.311][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:50.313][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:31:50.316][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:50.318][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:50.319][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.321][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.324][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:50.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:50.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.333][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-26 23:31:50.335][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-26 23:31:50.337][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.339][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.340][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-26 23:31:50.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-26 23:31:50.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.345][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 23:31:50.347][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 23:31:50.348][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.349][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.352][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 23:31:50.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 23:31:50.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.358][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 23:31:50.359][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 23:31:50.361][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.363][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.364][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 23:31:50.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 23:31:50.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.369][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 23:31:50.371][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 23:31:50.372][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.373][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.375][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 23:31:50.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 23:31:50.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.380][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:31:50.381][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:31:50.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.383][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.385][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:31:50.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:31:50.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.391][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-26 23:31:50.392][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:50.394][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.395][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.397][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-26 23:31:50.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:31:50.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.402][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:50.403][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:50.404][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.405][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.407][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:50.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:50.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.420][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:31:50.422][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:31:50.423][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.425][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.428][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:31:50.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:31:50.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.435][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-26 23:31:50.437][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-26 23:31:50.438][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.439][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.441][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-26 23:31:50.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-26 23:31:50.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.446][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 23:31:50.447][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 23:31:50.448][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.449][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.451][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 23:31:50.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 23:31:50.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.456][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:50.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:50.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.461][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:50.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:50.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:50.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:50.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.471][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:31:50.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:31:50.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:50.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:50.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:50.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:50.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:50.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:50.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:50.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:50.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.496][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:50.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:50.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.501][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:50.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:50.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:50.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:50.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:50.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:50.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:50.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:50.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:50.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:50.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.525][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:50.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:50.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:50.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:31:50.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:31:50.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:50.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:31:50.535][self$createEntryFromContent] Accession numbers: , 2528, 7799.
biodb.DEBUG[2024-06-26 23:31:50.537][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2024-06-26 23:31:50.538][function(conn, opt)] Entries: [4]: "NULL, <environment>, <environment>, <environment>"
biodb.INFO [2024-06-26 23:31:50.585][biodb::testThat]
biodb.INFO [2024-06-26 23:31:50.587][biodb::testThat] Running test function test.peak.table (" The peak table is correct. ").
biodb.INFO [2024-06-26 23:31:50.588][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-26 23:31:50.589][biodb::testThat]
biodb.INFO [2024-06-26 23:31:50.643][biodb::testThat]
biodb.INFO [2024-06-26 23:31:50.644][biodb::testThat] Running test function test.nb.entries (" Nb entries is positive. ").
biodb.INFO [2024-06-26 23:31:50.646][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-26 23:31:50.647][biodb::testThat]
biodb.INFO [2024-06-26 23:31:50.672][biodb::testThat]
biodb.INFO [2024-06-26 23:31:50.675][biodb::testThat] Running test function test.entry.ids (" We can get a list of entry ids. ").
biodb.INFO [2024-06-26 23:31:50.677][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-26 23:31:50.679][biodb::testThat]
biodb.DEBUG[2024-06-26 23:31:50.684][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=1*&searchCategory=CHEBI ID&maximumResults=100&starsCategory=ALL".
biodb.DEBUG[2024-06-26 23:31:50.690][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-26 23:31:50.692][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-26 23:31:50.696][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=1%2A&searchCategory=CHEBI%20ID&maximumResults=100&starsCategory=ALL".
biodb.TRACE[2024-06-26 23:31:51.109][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=1%2A&searchCategory=CHEBI%20ID&maximumResults=100&starsCategory=ALL).
biodb.DEBUG[2024-06-26 23:31:51.596][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-26 23:31:51.600][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/aed2cd6d5d221333c0a30a9f8dbc41b4.content"
biodb.TRACE[2024-06-26 23:31:51.606][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/aed2cd6d5d221333c0a30a9f8dbc41b4.request"
biodb.TRACE[2024-06-26 23:31:51.653][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:31:51.655][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:31:51.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:51.657][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:31:51.659][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:51.660][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:31:51.662][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:31:51.664][ef$get] fields variable is a list.
biodb.INFO [2024-06-26 23:31:51.668][biodb::testThat]
biodb.INFO [2024-06-26 23:31:51.669][biodb::testThat] Running test function test.annotateMzValues (" annotateMzValues() works correctly. ").
biodb.INFO [2024-06-26 23:31:51.671][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-26 23:31:51.672][biodb::testThat]
biodb.ERROR[2024-06-26 23:31:51.696][conn$annotateMzValues] No column named "mz" was found inside data frame.
biodb.ERROR[2024-06-26 23:31:51.715][ef$checkIsDefined] Field(s) "foo" is/are not defined.
biodb.INFO [2024-06-26 23:31:51.732][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-06-26 23:31:51.734][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2024-06-26 23:31:51.736][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2024-06-26 23:31:51.737][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-06-26 23:31:51.738][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:51.739][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:51.741][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:51.742][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:51.743][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:51.744][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-06-26 23:31:51.757][biodb::testContext]
biodb.INFO [2024-06-26 23:31:51.758][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-26 23:31:51.759][biodb::testContext] Test context - Test conversions
biodb.INFO [2024-06-26 23:31:51.760][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-26 23:31:51.762][biodb::testContext]
biodb.INFO [2024-06-26 23:31:51.765][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.12.0.
biodb.DEBUG[2024-06-26 23:31:51.767][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.19-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-06-26 23:31:51.773][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-26 23:31:51.774][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-06-26 23:31:51.776][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-06-26 23:31:51.777][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:51.778][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:51.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:51.780][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-06-26 23:31:51.782][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-06-26 23:31:51.783][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:51.784][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:51.785][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:51.786][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-06-26 23:31:51.788][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-06-26 23:31:51.789][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:51.790][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:51.791][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:51.792][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-06-26 23:31:51.793][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-06-26 23:31:51.795][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-06-26 23:31:51.796][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:51.797][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:51.798][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:51.800][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-06-26 23:31:51.801][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-06-26 23:31:51.802][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-06-26 23:31:51.803][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:51.804][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:51.806][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:51.807][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-06-26 23:31:51.808][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-06-26 23:31:51.809][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:51.810][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:51.811][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:51.813][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-06-26 23:31:51.814][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-06-26 23:31:51.816][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-06-26 23:31:51.817][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:51.818][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:51.820][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:51.821][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-06-26 23:31:51.823][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-06-26 23:31:51.824][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:51.825][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:51.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:51.828][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-06-26 23:31:51.829][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-06-26 23:31:51.831][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-06-26 23:31:51.832][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:51.834][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:51.835][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:51.836][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-06-26 23:31:51.838][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-06-26 23:31:51.839][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-06-26 23:31:51.840][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-06-26 23:31:51.842][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-06-26 23:31:51.843][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-06-26 23:31:51.844][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:51.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:51.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:51.848][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-06-26 23:31:51.850][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-06-26 23:31:51.851][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:51.852][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:51.853][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:51.854][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-06-26 23:31:51.856][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-06-26 23:31:51.857][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:51.859][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:51.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:51.863][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-06-26 23:31:51.865][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-06-26 23:31:51.867][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:51.869][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:51.871][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:51.873][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-06-26 23:31:51.875][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-06-26 23:31:51.877][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:51.879][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:51.881][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:51.883][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-06-26 23:31:51.886][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-06-26 23:31:51.887][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:51.889][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:51.891][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:51.893][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-06-26 23:31:51.895][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-06-26 23:31:51.902][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-06-26 23:31:51.904][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:51.918][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:51.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:51.922][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-06-26 23:31:51.924][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-06-26 23:31:51.926][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-06-26 23:31:51.928][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:51.930][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:51.932][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:51.934][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-06-26 23:31:51.938][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-26 23:31:51.940][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-06-26 23:31:51.942][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-26 23:31:51.944][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-26 23:31:51.946][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-26 23:31:51.948][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-26 23:31:51.950][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-26 23:31:51.952][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-26 23:31:51.954][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-06-26 23:31:51.955][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-26 23:31:51.957][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-26 23:31:51.959][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-06-26 23:31:51.960][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-26 23:31:51.962][self$setPropertyValue]
biodb.DEBUG[2024-06-26 23:31:51.963][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-26 23:31:51.964][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-26 23:31:51.964][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-26 23:31:51.964][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-26 23:31:51.964][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-06-26 23:31:51.964][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-06-26 23:31:51.965][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-26 23:31:51.967][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-26 23:31:51.968][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-26 23:31:51.969][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-26 23:31:51.971][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-26 23:31:51.972][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-26 23:31:51.973][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-26 23:31:51.974][self$setPropertyValue]
biodb.DEBUG[2024-06-26 23:31:51.976][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-26 23:31:51.977][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-26 23:31:51.978][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-26 23:31:51.979][self$setPropertyValue]
biodb.DEBUG[2024-06-26 23:31:51.981][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-06-26 23:31:51.983][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-26 23:31:51.984][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-06-26 23:31:51.986][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-26 23:31:51.987][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-26 23:31:51.988][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-26 23:31:51.989][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-26 23:31:51.991][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-26 23:31:51.992][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-26 23:31:51.994][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-06-26 23:31:51.995][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-26 23:31:51.996][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-26 23:31:51.998][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-06-26 23:31:51.999][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-26 23:31:52.001][self$setPropertyValue]
biodb.DEBUG[2024-06-26 23:31:52.002][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-26 23:31:52.003][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-26 23:31:52.003][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-26 23:31:52.003][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-26 23:31:52.003][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-06-26 23:31:52.003][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-06-26 23:31:52.005][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-26 23:31:52.006][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-26 23:31:52.007][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-26 23:31:52.008][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-26 23:31:52.010][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-26 23:31:52.011][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-26 23:31:52.013][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-26 23:31:52.015][self$setPropertyValue]
biodb.DEBUG[2024-06-26 23:31:52.017][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-26 23:31:52.018][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-26 23:31:52.020][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-26 23:31:52.022][self$setPropertyValue]
biodb.DEBUG[2024-06-26 23:31:52.025][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-06-26 23:31:52.028][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-26 23:31:52.030][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-06-26 23:31:52.032][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-26 23:31:52.034][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-26 23:31:52.035][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-26 23:31:52.038][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-26 23:31:52.040][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-26 23:31:52.042][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-26 23:31:52.043][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-06-26 23:31:52.045][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-26 23:31:52.047][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-06-26 23:31:52.050][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-06-26 23:31:52.052][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-26 23:31:52.054][self$setPropertyValue]
biodb.DEBUG[2024-06-26 23:31:52.056][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-26 23:31:52.057][self$setPropertyValue]
biodb.DEBUG[2024-06-26 23:31:52.060][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-26 23:31:52.062][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-26 23:31:52.063][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-26 23:31:52.065][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-26 23:31:52.067][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-26 23:31:52.069][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-26 23:31:52.071][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-26 23:31:52.073][self$setPropertyValue]
biodb.DEBUG[2024-06-26 23:31:52.075][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-26 23:31:52.076][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-26 23:31:52.078][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-26 23:31:52.080][self$setPropertyValue]
biodb.DEBUG[2024-06-26 23:31:52.082][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-06-26 23:31:52.085][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-26 23:31:52.087][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-06-26 23:31:52.089][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-26 23:31:52.091][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-26 23:31:52.093][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-26 23:31:52.095][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-26 23:31:52.097][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-26 23:31:52.099][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-26 23:31:52.101][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-06-26 23:31:52.103][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-26 23:31:52.105][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-06-26 23:31:52.107][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-06-26 23:31:52.109][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-26 23:31:52.112][self$setPropertyValue]
biodb.DEBUG[2024-06-26 23:31:52.114][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-26 23:31:52.116][self$setPropertyValue]
biodb.DEBUG[2024-06-26 23:31:52.119][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-26 23:31:52.122][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-26 23:31:52.125][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-26 23:31:52.127][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-26 23:31:52.130][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-26 23:31:52.132][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-26 23:31:52.134][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-26 23:31:52.136][self$setPropertyValue]
biodb.DEBUG[2024-06-26 23:31:52.138][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-26 23:31:52.140][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-26 23:31:52.142][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-26 23:31:52.144][self$setPropertyValue]
biodb.DEBUG[2024-06-26 23:31:52.146][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-26 23:31:52.148][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:52.150][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:52.152][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:52.154][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:52.155][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:52.157][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:52.159][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:52.161][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:52.162][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:52.164][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:52.166][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:52.168][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:52.170][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:52.171][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:52.173][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:52.175][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:52.177][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:52.178][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:52.180][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:52.182][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:52.184][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:52.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:52.187][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:52.189][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:52.191][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:52.193][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:52.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:52.196][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:52.198][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:52.200][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:52.202][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:52.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:52.205][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:52.207][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:52.209][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:52.211][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:52.212][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:52.214][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:52.216][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:52.218][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:52.220][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:52.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:52.223][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:52.225][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:52.227][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:52.229][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:52.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:52.233][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:52.235][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:52.236][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:52.238][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:52.240][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:52.242][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:52.243][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:52.245][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:52.247][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:52.249][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:52.251][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:52.252][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:52.254][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:52.256][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:52.258][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:52.260][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:52.262][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:52.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:52.265][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:52.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:52.269][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:52.270][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:52.272][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:52.274][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:52.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:52.278][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:52.280][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:52.282][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:52.284][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:52.285][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:52.287][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:52.289][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:52.291][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:52.293][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:52.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:52.297][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:52.299][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:52.300][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:52.302][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:52.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:52.306][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-06-26 23:31:52.309][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-06-26 23:31:52.312][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-06-26 23:31:52.314][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-06-26 23:31:52.317][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-06-26 23:31:52.320][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-06-26 23:31:52.323][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-06-26 23:31:52.325][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-06-26 23:31:52.328][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-06-26 23:31:52.330][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-06-26 23:31:52.333][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-06-26 23:31:52.336][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-06-26 23:31:52.338][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-06-26 23:31:52.341][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-06-26 23:31:52.343][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-06-26 23:31:52.345][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-06-26 23:31:52.347][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-06-26 23:31:52.348][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-06-26 23:31:52.350][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-06-26 23:31:52.352][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-06-26 23:31:52.354][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-06-26 23:31:52.355][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-06-26 23:31:52.357][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-06-26 23:31:52.359][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-06-26 23:31:52.361][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-06-26 23:31:52.362][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-06-26 23:31:52.364][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-06-26 23:31:52.366][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-06-26 23:31:52.367][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-06-26 23:31:52.369][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-06-26 23:31:52.371][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-06-26 23:31:52.373][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-06-26 23:31:52.375][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-06-26 23:31:52.376][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-06-26 23:31:52.378][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-06-26 23:31:52.379][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-06-26 23:31:52.381][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-06-26 23:31:52.383][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-06-26 23:31:52.384][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-06-26 23:31:52.387][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-06-26 23:31:52.389][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-06-26 23:31:52.391][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-06-26 23:31:52.392][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-06-26 23:31:52.394][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-06-26 23:31:52.396][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-06-26 23:31:52.397][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-06-26 23:31:52.399][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-06-26 23:31:52.402][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-06-26 23:31:52.403][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-06-26 23:31:52.405][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-06-26 23:31:52.407][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-06-26 23:31:52.408][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-06-26 23:31:52.410][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-06-26 23:31:52.412][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-06-26 23:31:52.413][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-06-26 23:31:52.415][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-06-26 23:31:52.418][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-06-26 23:31:52.420][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-06-26 23:31:52.422][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-06-26 23:31:52.424][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-06-26 23:31:52.426][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-06-26 23:31:52.428][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-06-26 23:31:52.431][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-06-26 23:31:52.433][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-06-26 23:31:52.440][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-06-26 23:31:52.442][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-06-26 23:31:52.445][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-06-26 23:31:52.448][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-06-26 23:31:52.450][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-06-26 23:31:52.452][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-06-26 23:31:52.454][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-06-26 23:31:52.456][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-06-26 23:31:52.458][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-06-26 23:31:52.460][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-06-26 23:31:52.461][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-06-26 23:31:52.463][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-06-26 23:31:52.465][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-06-26 23:31:52.467][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-06-26 23:31:52.468][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-06-26 23:31:52.470][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-06-26 23:31:52.472][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-06-26 23:31:52.473][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-06-26 23:31:52.475][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-06-26 23:31:52.477][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-06-26 23:31:52.479][initialize] This is biodb version 1.12.0.
biodb.DEBUG[2024-06-26 23:31:52.481][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-26 23:31:52.482][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:52.483][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:52.484][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:52.485][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:52.486][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:52.488][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:52.489][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:52.506][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:52.507][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:52.509][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:52.510][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:52.511][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:52.512][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:52.514][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:52.515][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:52.516][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:52.517][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:52.519][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:52.520][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:52.522][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:52.523][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:52.525][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:52.527][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:52.528][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:52.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:52.531][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:52.532][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:52.533][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:52.534][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:52.535][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:52.537][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:52.538][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:52.539][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:52.540][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:52.541][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:52.543][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:52.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:52.545][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:52.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:52.548][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:52.549][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:52.550][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:52.552][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:52.553][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:52.554][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:52.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:52.557][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:52.558][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:52.560][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:52.561][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:52.563][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:52.565][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:52.567][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:52.569][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:52.570][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:52.572][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:52.574][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:52.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:52.578][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:52.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:52.581][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:52.583][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:52.585][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:52.587][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:52.588][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:52.590][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:52.592][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:52.594][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:52.595][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:52.597][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:52.599][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:52.601][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:52.603][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:52.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:52.607][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:52.608][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:52.610][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:52.612][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:52.614][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:52.615][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:52.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:52.619][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:52.621][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:52.623][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:52.624][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:52.626][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:52.628][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:52.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:52.631][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:52.633][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:52.635][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:52.637][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:52.638][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:52.640][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:52.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:52.644][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:52.645][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:52.647][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:52.649][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:52.651][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:52.652][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:52.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:52.656][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:52.658][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:52.660][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:52.661][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:52.663][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:52.665][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:52.667][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:52.669][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:52.670][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:52.672][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:52.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:52.676][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:52.678][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:52.680][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:52.681][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:52.683][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:52.685][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:52.687][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:52.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:52.691][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:52.693][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:52.697][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.19-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2024-06-26 23:31:52.700][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2024-06-26 23:31:52.703][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-26 23:31:52.705][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-06-26 23:31:52.707][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-26 23:31:52.709][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-26 23:31:52.711][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-26 23:31:52.713][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-26 23:31:52.715][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-06-26 23:31:52.717][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2024-06-26 23:31:52.719][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-06-26 23:31:52.721][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-26 23:31:52.723][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-26 23:31:52.725][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2024-06-26 23:31:52.727][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-26 23:31:52.729][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-06-26 23:31:52.729][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2024-06-26 23:31:52.729][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-06-26 23:31:52.729][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-06-26 23:31:52.729][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-06-26 23:31:52.729][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2024-06-26 23:31:52.729][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-06-26 23:31:52.729][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-06-26 23:31:52.729][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2024-06-26 23:31:52.729][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2024-06-26 23:31:52.729][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-06-26 23:31:52.731][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-06-26 23:31:52.733][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-26 23:31:52.733][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-26 23:31:52.733][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-26 23:31:52.735][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-06-26 23:31:52.737][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-26 23:31:52.739][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-26 23:31:52.741][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-26 23:31:52.743][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-26 23:31:52.745][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-26 23:31:52.747][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-26 23:31:52.749][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-26 23:31:52.749][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2024-06-26 23:31:52.751][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-26 23:31:52.753][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-26 23:31:52.754][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-06-26 23:31:52.756][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2024-06-26 23:31:52.756][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2024-06-26 23:31:52.759][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-06-26 23:31:52.762][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-06-26 23:31:52.765][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2024-06-26 23:31:52.767][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-06-26 23:31:52.770][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-06-26 23:31:52.773][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-06-26 23:31:52.779][super$initialize] Initialize connector chebi.
biodb.DEBUG[2024-06-26 23:31:52.781][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2024-06-26 23:31:52.783][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2024-06-26 23:31:52.787][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2024-06-26 23:31:52.789][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-26 23:31:52.792][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-26 23:31:52.794][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2024-06-26 23:31:52.797][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2024-06-26 23:31:52.800][biodb::testThat]
biodb.INFO [2024-06-26 23:31:52.802][biodb::testThat] Running test function test_chebi_convCasToChebi (" convCasToChebi() works. ").
biodb.INFO [2024-06-26 23:31:52.804][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-26 23:31:52.806][biodb::testThat]
biodb.DEBUG[2024-06-26 23:31:52.813][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2024-06-26 23:31:52.821][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-26 23:31:52.823][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-26 23:31:52.825][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.TRACE[2024-06-26 23:31:53.177][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl).
biodb.DEBUG[2024-06-26 23:31:53.726][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-26 23:31:53.730][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content"
biodb.TRACE[2024-06-26 23:31:53.738][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.request"
biodb.DEBUG[2024-06-26 23:31:53.746][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-06-26 23:31:53.753][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-26 23:31:53.755][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-26 23:31:53.759][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY%20NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.TRACE[2024-06-26 23:31:54.203][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY%20NUMBERS&maximumResults=10&starsCategory=ALL).
biodb.DEBUG[2024-06-26 23:31:54.559][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-26 23:31:54.566][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content"
biodb.TRACE[2024-06-26 23:31:54.573][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.request"
biodb.DEBUG[2024-06-26 23:31:54.580][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:54.581][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:54.582][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:54.607][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:54.611][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:54.612][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:54.614][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:54.617][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-06-26 23:31:54.623][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-26 23:31:54.624][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-26 23:31:54.626][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY%20NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.TRACE[2024-06-26 23:31:55.004][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY%20NUMBERS&maximumResults=10&starsCategory=ALL).
biodb.DEBUG[2024-06-26 23:31:55.376][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-26 23:31:55.379][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content"
biodb.TRACE[2024-06-26 23:31:55.384][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.request"
biodb.DEBUG[2024-06-26 23:31:55.387][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:55.389][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:55.390][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:55.719][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:55.721][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:55.722][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:55.723][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:55.739][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:55.742][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:55.743][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:55.752][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:55.753][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:55.755][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:55.757][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:55.764][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-06-26 23:31:55.768][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-26 23:31:55.770][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2024-06-26 23:31:55.772][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-26 23:31:55.775][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2024-06-26 23:31:55.778][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:55.780][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:55.781][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:55.789][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:55.790][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:55.793][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:55.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:55.798][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-06-26 23:31:55.804][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-26 23:31:55.807][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2024-06-26 23:31:55.809][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-26 23:31:55.811][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2024-06-26 23:31:55.814][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:55.816][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:55.817][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:55.834][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:55.835][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:55.837][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:55.839][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:55.841][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:55.843][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:55.845][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:55.861][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:55.862][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:55.864][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:55.865][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:55.872][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-06-26 23:31:55.878][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-26 23:31:55.880][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2024-06-26 23:31:55.883][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-26 23:31:55.886][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2024-06-26 23:31:55.889][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:55.891][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:55.893][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:55.912][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:55.915][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:55.917][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:55.919][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:55.922][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-06-26 23:31:55.928][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-26 23:31:55.931][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2024-06-26 23:31:55.934][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-26 23:31:55.948][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2024-06-26 23:31:55.957][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:55.959][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:55.962][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:55.979][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:55.980][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:55.982][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:55.983][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:55.985][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=14215-68-0&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-06-26 23:31:55.989][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-26 23:31:55.991][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-26 23:31:55.993][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=14215-68-0&searchCategory=REGISTRY%20NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.TRACE[2024-06-26 23:31:56.365][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=14215-68-0&searchCategory=REGISTRY%20NUMBERS&maximumResults=10&starsCategory=ALL).
biodb.DEBUG[2024-06-26 23:31:56.732][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-26 23:31:56.736][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70e3912746e7e39b39fbbffe6c90b502.content"
biodb.TRACE[2024-06-26 23:31:56.744][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70e3912746e7e39b39fbbffe6c90b502.request"
biodb.DEBUG[2024-06-26 23:31:56.747][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:56.749][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:56.751][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:56.766][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:56.767][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:56.768][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:56.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-06-26 23:31:56.792][biodb::testThat]
biodb.INFO [2024-06-26 23:31:56.795][biodb::testThat] Running test function test_chebi_convInchiToChebi (" convInchiToChebi() works. ").
biodb.INFO [2024-06-26 23:31:56.797][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-26 23:31:56.799][biodb::testThat]
biodb.DEBUG[2024-06-26 23:31:56.805][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=InChI=1S/C15H24/c1-9(2)11-7-8-15(4)12-6-5-10(3)14(15)13(11)12/h5,9,11-14H,6-8H2,1-4H3/t11?,12?,13?,14?,15-/m0/s1&searchCategory=INCHI/INCHI KEY&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-06-26 23:31:56.812][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-26 23:31:56.814][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-26 23:31:56.819][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=InChI%3D1S%2FC15H24%2Fc1-9%282%2911-7-8-15%284%2912-6-5-10%283%2914%2815%2913%2811%2912%2Fh5%2C9%2C11-14H%2C6-8H2%2C1-4H3%2Ft11%3F%2C12%3F%2C13%3F%2C14%3F%2C15-%2Fm0%2Fs1&searchCategory=INCHI%2FINCHI%20KEY&maximumResults=10&starsCategory=ALL".
biodb.TRACE[2024-06-26 23:31:57.180][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=InChI%3D1S%2FC15H24%2Fc1-9%282%2911-7-8-15%284%2912-6-5-10%283%2914%2815%2913%2811%2912%2Fh5%2C9%2C11-14H%2C6-8H2%2C1-4H3%2Ft11%3F%2C12%3F%2C13%3F%2C14%3F%2C15-%2Fm0%2Fs1&searchCategory=INCHI%2FINCHI%20KEY&maximumResults=10&starsCategory=ALL).
biodb.DEBUG[2024-06-26 23:31:57.657][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-26 23:31:57.662][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64007787a4f3864bb479683766386808.content"
biodb.TRACE[2024-06-26 23:31:57.671][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64007787a4f3864bb479683766386808.request"
biodb.DEBUG[2024-06-26 23:31:57.675][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:57.678][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:57.679][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:57.696][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:57.698][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:57.700][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:57.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:57.709][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=VLXDPFLIRFYIME-MWHZVNNOSA-N&searchCategory=INCHI/INCHI KEY&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-06-26 23:31:57.715][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-26 23:31:57.718][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-26 23:31:57.721][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=VLXDPFLIRFYIME-MWHZVNNOSA-N&searchCategory=INCHI%2FINCHI%20KEY&maximumResults=10&starsCategory=ALL".
biodb.TRACE[2024-06-26 23:31:58.159][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=VLXDPFLIRFYIME-MWHZVNNOSA-N&searchCategory=INCHI%2FINCHI%20KEY&maximumResults=10&starsCategory=ALL).
biodb.DEBUG[2024-06-26 23:31:58.519][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-26 23:31:58.522][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7547b08b3ebd50447d61026ab0af8d63.content"
biodb.TRACE[2024-06-26 23:31:58.527][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7547b08b3ebd50447d61026ab0af8d63.request"
biodb.DEBUG[2024-06-26 23:31:58.531][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:31:58.532][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:58.534][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:58.549][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:58.550][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:58.552][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:58.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-06-26 23:31:58.562][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-06-26 23:31:58.564][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2024-06-26 23:31:58.565][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2024-06-26 23:31:58.567][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-06-26 23:31:58.568][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:58.569][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:58.570][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:58.572][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:58.574][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:58.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-06-26 23:31:58.582][biodb::testContext]
biodb.INFO [2024-06-26 23:31:58.583][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-26 23:31:58.585][biodb::testContext] Test context - Test web services
biodb.INFO [2024-06-26 23:31:58.586][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-26 23:31:58.587][biodb::testContext]
biodb.INFO [2024-06-26 23:31:58.591][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.12.0.
biodb.DEBUG[2024-06-26 23:31:58.595][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.19-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-06-26 23:31:58.605][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-26 23:31:58.606][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-06-26 23:31:58.608][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-06-26 23:31:58.610][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:58.612][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:58.613][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:58.614][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-06-26 23:31:58.616][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-06-26 23:31:58.617][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:58.618][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:58.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:58.622][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-06-26 23:31:58.624][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-06-26 23:31:58.626][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:58.628][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:58.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:58.632][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-06-26 23:31:58.634][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-06-26 23:31:58.636][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-06-26 23:31:58.639][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:58.641][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:58.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:58.645][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-06-26 23:31:58.648][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-06-26 23:31:58.650][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-06-26 23:31:58.652][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:58.653][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:58.655][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:58.656][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-06-26 23:31:58.657][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-06-26 23:31:58.658][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:58.660][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:58.661][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:58.662][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-06-26 23:31:58.665][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-06-26 23:31:58.667][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-06-26 23:31:58.669][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:58.671][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:58.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:58.675][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-06-26 23:31:58.677][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-06-26 23:31:58.679][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:58.681][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:58.683][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:58.685][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-06-26 23:31:58.687][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-06-26 23:31:58.688][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-06-26 23:31:58.689][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:58.690][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:58.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:58.693][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-06-26 23:31:58.694][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-06-26 23:31:58.696][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-06-26 23:31:58.697][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-06-26 23:31:58.698][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-06-26 23:31:58.699][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-06-26 23:31:58.701][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:58.702][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:58.703][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:58.704][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-06-26 23:31:58.706][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-06-26 23:31:58.707][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:58.708][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:58.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:58.710][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-06-26 23:31:58.711][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-06-26 23:31:58.713][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:58.714][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:58.716][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:58.718][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-06-26 23:31:58.720][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-06-26 23:31:58.722][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:58.723][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:58.725][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:58.727][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-06-26 23:31:58.729][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-06-26 23:31:58.731][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:58.732][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:58.733][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:58.734][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-06-26 23:31:58.736][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-06-26 23:31:58.737][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:58.738][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:58.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:58.741][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-06-26 23:31:58.742][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-06-26 23:31:58.746][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-06-26 23:31:58.748][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:58.749][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:58.750][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:58.752][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-06-26 23:31:58.753][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-06-26 23:31:58.755][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-06-26 23:31:58.757][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:58.758][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:58.760][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:58.762][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-06-26 23:31:58.766][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-26 23:31:58.768][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-06-26 23:31:58.770][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-26 23:31:58.772][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-26 23:31:58.775][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-26 23:31:58.777][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-26 23:31:58.779][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-26 23:31:58.782][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-26 23:31:58.785][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-06-26 23:31:58.786][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-26 23:31:58.788][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-26 23:31:58.789][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-06-26 23:31:58.791][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-26 23:31:58.792][self$setPropertyValue]
biodb.DEBUG[2024-06-26 23:31:58.793][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-26 23:31:58.795][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-26 23:31:58.795][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-26 23:31:58.795][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-26 23:31:58.795][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-06-26 23:31:58.795][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-06-26 23:31:58.796][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-26 23:31:58.797][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-26 23:31:58.799][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-26 23:31:58.800][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-26 23:31:58.801][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-26 23:31:58.802][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-26 23:31:58.803][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-26 23:31:58.805][self$setPropertyValue]
biodb.DEBUG[2024-06-26 23:31:58.806][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-26 23:31:58.807][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-26 23:31:58.808][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-26 23:31:58.810][self$setPropertyValue]
biodb.DEBUG[2024-06-26 23:31:58.812][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-06-26 23:31:58.815][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-26 23:31:58.817][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-06-26 23:31:58.818][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-26 23:31:58.820][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-26 23:31:58.821][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-26 23:31:58.822][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-26 23:31:58.824][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-26 23:31:58.826][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-26 23:31:58.827][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-06-26 23:31:58.829][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-26 23:31:58.830][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-26 23:31:58.832][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-06-26 23:31:58.833][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-26 23:31:58.835][self$setPropertyValue]
biodb.DEBUG[2024-06-26 23:31:58.837][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-26 23:31:58.838][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-26 23:31:58.838][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-26 23:31:58.838][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-26 23:31:58.838][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-06-26 23:31:58.838][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-06-26 23:31:58.840][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-26 23:31:58.841][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-26 23:31:58.842][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-26 23:31:58.843][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-26 23:31:58.845][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-26 23:31:58.846][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-26 23:31:58.847][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-26 23:31:58.848][self$setPropertyValue]
biodb.DEBUG[2024-06-26 23:31:58.850][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-26 23:31:58.851][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-26 23:31:58.852][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-26 23:31:58.853][self$setPropertyValue]
biodb.DEBUG[2024-06-26 23:31:58.855][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-06-26 23:31:58.857][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-26 23:31:58.858][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-06-26 23:31:58.860][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-26 23:31:58.861][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-26 23:31:58.862][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-26 23:31:58.864][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-26 23:31:58.865][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-26 23:31:58.866][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-26 23:31:58.868][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-06-26 23:31:58.869][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-26 23:31:58.870][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-06-26 23:31:58.871][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-06-26 23:31:58.873][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-26 23:31:58.874][self$setPropertyValue]
biodb.DEBUG[2024-06-26 23:31:58.875][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-26 23:31:58.877][self$setPropertyValue]
biodb.DEBUG[2024-06-26 23:31:58.878][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-26 23:31:58.879][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-26 23:31:58.881][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-26 23:31:58.882][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-26 23:31:58.884][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-26 23:31:58.886][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-26 23:31:58.887][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-26 23:31:58.889][self$setPropertyValue]
biodb.DEBUG[2024-06-26 23:31:58.891][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-26 23:31:58.893][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-26 23:31:58.894][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-26 23:31:58.896][self$setPropertyValue]
biodb.DEBUG[2024-06-26 23:31:58.898][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-06-26 23:31:58.901][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-26 23:31:58.903][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-06-26 23:31:58.905][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-26 23:31:58.907][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-26 23:31:58.908][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-26 23:31:58.910][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-26 23:31:58.912][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-26 23:31:58.914][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-26 23:31:58.915][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-06-26 23:31:58.916][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-26 23:31:58.918][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-06-26 23:31:58.919][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-06-26 23:31:58.920][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-26 23:31:58.921][self$setPropertyValue]
biodb.DEBUG[2024-06-26 23:31:58.923][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-26 23:31:58.924][self$setPropertyValue]
biodb.DEBUG[2024-06-26 23:31:58.925][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-26 23:31:58.927][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-26 23:31:58.928][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-26 23:31:58.929][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-26 23:31:58.930][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-26 23:31:58.931][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-26 23:31:58.933][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-26 23:31:58.934][self$setPropertyValue]
biodb.DEBUG[2024-06-26 23:31:58.935][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-26 23:31:58.936][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-26 23:31:58.947][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-26 23:31:58.949][self$setPropertyValue]
biodb.DEBUG[2024-06-26 23:31:58.951][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-26 23:31:58.952][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:58.953][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:58.955][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:58.956][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:58.957][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:58.958][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:58.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:58.960][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:58.961][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:58.963][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:58.964][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:58.965][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:58.966][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:58.967][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:58.968][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:58.969][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:58.970][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:58.972][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:58.973][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:58.974][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:58.975][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:58.976][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:58.977][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:58.978][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:58.979][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:58.981][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:58.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:58.983][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:58.984][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:58.985][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:58.986][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:58.987][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:58.988][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:58.989][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:58.991][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:58.992][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:58.993][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:58.994][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:58.995][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:58.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:58.997][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:58.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:59.000][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:59.001][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:59.002][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:59.003][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:59.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:59.005][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:59.006][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:59.007][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:59.009][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:59.010][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:59.011][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:59.012][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:59.013][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:59.014][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:59.015][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:59.016][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:59.018][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:59.019][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:59.020][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:59.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:59.022][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:59.023][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:59.024][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:59.025][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:59.027][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:59.028][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:59.029][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:59.030][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:59.031][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:59.032][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:59.033][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:59.034][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:59.035][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:59.036][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:59.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:59.039][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:59.040][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:59.041][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:59.042][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:59.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:59.044][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:59.045][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:59.046][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:59.047][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:59.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:59.050][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-06-26 23:31:59.051][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-06-26 23:31:59.053][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-06-26 23:31:59.055][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-06-26 23:31:59.056][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-06-26 23:31:59.058][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-06-26 23:31:59.060][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-06-26 23:31:59.061][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-06-26 23:31:59.063][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-06-26 23:31:59.064][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-06-26 23:31:59.066][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-06-26 23:31:59.068][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-06-26 23:31:59.069][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-06-26 23:31:59.071][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-06-26 23:31:59.072][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-06-26 23:31:59.074][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-06-26 23:31:59.076][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-06-26 23:31:59.079][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-06-26 23:31:59.082][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-06-26 23:31:59.084][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-06-26 23:31:59.087][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-06-26 23:31:59.090][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-06-26 23:31:59.093][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-06-26 23:31:59.095][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-06-26 23:31:59.098][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-06-26 23:31:59.101][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-06-26 23:31:59.103][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-06-26 23:31:59.106][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-06-26 23:31:59.109][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-06-26 23:31:59.112][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-06-26 23:31:59.114][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-06-26 23:31:59.117][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-06-26 23:31:59.120][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-06-26 23:31:59.123][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-06-26 23:31:59.125][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-06-26 23:31:59.128][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-06-26 23:31:59.131][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-06-26 23:31:59.134][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-06-26 23:31:59.136][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-06-26 23:31:59.139][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-06-26 23:31:59.142][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-06-26 23:31:59.144][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-06-26 23:31:59.147][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-06-26 23:31:59.150][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-06-26 23:31:59.153][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-06-26 23:31:59.155][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-06-26 23:31:59.158][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-06-26 23:31:59.161][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-06-26 23:31:59.163][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-06-26 23:31:59.166][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-06-26 23:31:59.168][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-06-26 23:31:59.170][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-06-26 23:31:59.171][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-06-26 23:31:59.173][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-06-26 23:31:59.175][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-06-26 23:31:59.177][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-06-26 23:31:59.178][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-06-26 23:31:59.180][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-06-26 23:31:59.183][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-06-26 23:31:59.184][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-06-26 23:31:59.186][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-06-26 23:31:59.188][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-06-26 23:31:59.189][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-06-26 23:31:59.191][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-06-26 23:31:59.193][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-06-26 23:31:59.195][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-06-26 23:31:59.196][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-06-26 23:31:59.198][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-06-26 23:31:59.199][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-06-26 23:31:59.201][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-06-26 23:31:59.203][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-06-26 23:31:59.204][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-06-26 23:31:59.206][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-06-26 23:31:59.208][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-06-26 23:31:59.209][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-06-26 23:31:59.211][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-06-26 23:31:59.213][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-06-26 23:31:59.215][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-06-26 23:31:59.216][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-06-26 23:31:59.218][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-06-26 23:31:59.219][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-06-26 23:31:59.221][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-06-26 23:31:59.223][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-06-26 23:31:59.224][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-06-26 23:31:59.227][initialize] This is biodb version 1.12.0.
biodb.DEBUG[2024-06-26 23:31:59.228][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-26 23:31:59.229][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:59.230][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:59.232][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:59.234][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:59.236][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:59.238][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:59.240][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:59.242][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:59.243][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:59.245][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:59.247][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:59.248][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:59.249][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:59.250][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:59.251][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:59.252][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:59.254][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:59.255][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:59.256][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:59.257][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:59.259][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:59.260][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:59.262][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:59.264][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:59.266][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:59.268][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:59.270][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:59.272][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:59.273][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:59.275][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:59.277][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:59.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:59.281][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:59.283][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:59.285][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:59.287][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:59.288][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:59.290][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:59.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:59.294][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:59.296][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:59.298][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:59.300][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:59.301][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:59.303][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:59.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:59.307][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:59.309][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:59.311][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:59.313][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:59.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:59.316][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:59.318][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:59.320][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:59.322][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:59.324][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:59.326][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:59.327][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:59.329][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:59.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:59.333][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:59.335][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:59.337][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:59.338][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:59.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:59.342][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:59.344][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:59.346][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:59.348][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:59.350][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:59.351][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:59.353][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:59.355][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:59.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:59.359][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:59.361][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:59.363][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:59.365][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:59.367][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:59.368][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:59.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:59.372][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:59.374][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:59.376][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:59.378][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:59.380][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:59.382][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:59.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:59.385][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:59.387][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:59.389][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:59.391][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:59.392][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:59.394][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:59.396][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:59.398][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:59.400][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:59.402][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:59.404][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:59.405][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:59.407][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:59.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:59.411][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:59.413][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:59.415][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:59.417][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:59.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:59.421][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:59.423][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:59.424][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:59.426][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:59.427][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:59.428][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:59.429][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:59.431][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:59.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:59.433][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:31:59.434][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:31:59.435][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:31:59.436][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:31:59.437][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:31:59.438][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:31:59.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:31:59.453][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.19-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2024-06-26 23:31:59.456][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2024-06-26 23:31:59.459][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-26 23:31:59.467][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-06-26 23:31:59.469][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-26 23:31:59.470][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-26 23:31:59.472][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-26 23:31:59.473][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-26 23:31:59.474][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-06-26 23:31:59.476][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2024-06-26 23:31:59.477][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-06-26 23:31:59.478][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-26 23:31:59.480][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-26 23:31:59.481][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2024-06-26 23:31:59.483][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-26 23:31:59.485][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-06-26 23:31:59.485][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2024-06-26 23:31:59.485][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-06-26 23:31:59.485][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-06-26 23:31:59.485][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-06-26 23:31:59.485][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2024-06-26 23:31:59.485][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-06-26 23:31:59.485][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-06-26 23:31:59.485][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2024-06-26 23:31:59.485][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2024-06-26 23:31:59.485][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-06-26 23:31:59.486][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-06-26 23:31:59.495][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-26 23:31:59.495][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-26 23:31:59.495][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-26 23:31:59.496][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-06-26 23:31:59.498][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-26 23:31:59.499][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-26 23:31:59.501][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-26 23:31:59.502][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-26 23:31:59.503][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-26 23:31:59.505][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-26 23:31:59.506][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-26 23:31:59.506][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2024-06-26 23:31:59.507][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-26 23:31:59.509][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-26 23:31:59.510][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-06-26 23:31:59.511][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2024-06-26 23:31:59.511][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2024-06-26 23:31:59.513][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-06-26 23:31:59.515][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-06-26 23:31:59.517][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2024-06-26 23:31:59.519][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-06-26 23:31:59.521][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-06-26 23:31:59.523][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-06-26 23:31:59.526][super$initialize] Initialize connector chebi.
biodb.DEBUG[2024-06-26 23:31:59.527][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2024-06-26 23:31:59.529][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2024-06-26 23:31:59.531][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2024-06-26 23:31:59.532][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-26 23:31:59.534][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-26 23:31:59.537][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2024-06-26 23:31:59.539][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2024-06-26 23:31:59.543][biodb::testThat]
biodb.INFO [2024-06-26 23:31:59.545][biodb::testThat] Running test function test.chebi.wsGetLiteEntity (" Web service getLiteEntity works fine. ").
biodb.INFO [2024-06-26 23:31:59.547][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-26 23:31:59.548][biodb::testThat]
biodb.DEBUG[2024-06-26 23:31:59.552][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2024-06-26 23:31:59.557][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-26 23:31:59.559][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2024-06-26 23:31:59.561][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-26 23:31:59.564][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2024-06-26 23:31:59.572][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI ID&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-06-26 23:31:59.577][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-26 23:31:59.578][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-26 23:31:59.581][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI%20ID&maximumResults=10&starsCategory=ALL".
biodb.TRACE[2024-06-26 23:31:59.932][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI%20ID&maximumResults=10&starsCategory=ALL).
biodb.DEBUG[2024-06-26 23:32:00.282][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-26 23:32:00.287][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/04c26672f8368e71348af4b34238160e.content"
biodb.TRACE[2024-06-26 23:32:00.295][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/04c26672f8368e71348af4b34238160e.request"
biodb.INFO [2024-06-26 23:32:00.318][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-06-26 23:32:00.319][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2024-06-26 23:32:00.321][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2024-06-26 23:32:00.322][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-06-26 23:32:00.324][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:32:00.325][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:32:00.326][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:32:00.327][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:32:00.328][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:32:00.329][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-06-26 23:32:00.335][biodb::testContext]
biodb.INFO [2024-06-26 23:32:00.336][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-26 23:32:00.337][biodb::testContext] Test context - Non regression tests
biodb.INFO [2024-06-26 23:32:00.338][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-26 23:32:00.340][biodb::testContext]
biodb.INFO [2024-06-26 23:32:00.343][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.12.0.
biodb.DEBUG[2024-06-26 23:32:00.345][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.19-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-06-26 23:32:00.351][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-26 23:32:00.352][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-06-26 23:32:00.354][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-06-26 23:32:00.355][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:32:00.356][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:32:00.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:32:00.359][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-06-26 23:32:00.360][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-06-26 23:32:00.361][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:32:00.362][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:32:00.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:32:00.365][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-06-26 23:32:00.366][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-06-26 23:32:00.367][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:32:00.368][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:32:00.369][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:32:00.371][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-06-26 23:32:00.373][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-06-26 23:32:00.375][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-06-26 23:32:00.377][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:32:00.379][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:32:00.381][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:32:00.383][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-06-26 23:32:00.385][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-06-26 23:32:00.387][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-06-26 23:32:00.389][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:32:00.390][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:32:00.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:32:00.394][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-06-26 23:32:00.396][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-06-26 23:32:00.398][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:32:00.400][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:32:00.402][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:32:00.404][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-06-26 23:32:00.406][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-06-26 23:32:00.408][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-06-26 23:32:00.409][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:32:00.411][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:32:00.413][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:32:00.414][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-06-26 23:32:00.415][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-06-26 23:32:00.417][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:32:00.418][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:32:00.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:32:00.420][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-06-26 23:32:00.422][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-06-26 23:32:00.423][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-06-26 23:32:00.424][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:32:00.425][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:32:00.426][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:32:00.427][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-06-26 23:32:00.429][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-06-26 23:32:00.430][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-06-26 23:32:00.431][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-06-26 23:32:00.432][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-06-26 23:32:00.434][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-06-26 23:32:00.435][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:32:00.436][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:32:00.437][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:32:00.438][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-06-26 23:32:00.439][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-06-26 23:32:00.440][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:32:00.442][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:32:00.443][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:32:00.444][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-06-26 23:32:00.445][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-06-26 23:32:00.446][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:32:00.447][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:32:00.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:32:00.450][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-06-26 23:32:00.451][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-06-26 23:32:00.452][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:32:00.453][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:32:00.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:32:00.456][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-06-26 23:32:00.457][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-06-26 23:32:00.458][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:32:00.459][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:32:00.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:32:00.461][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-06-26 23:32:00.463][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-06-26 23:32:00.464][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:32:00.465][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:32:00.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:32:00.469][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-06-26 23:32:00.471][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-06-26 23:32:00.477][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-06-26 23:32:00.479][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:32:00.480][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:32:00.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:32:00.483][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-06-26 23:32:00.485][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-06-26 23:32:00.487][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-06-26 23:32:00.488][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:32:00.489][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:32:00.491][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:32:00.492][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-06-26 23:32:00.494][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-26 23:32:00.495][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-06-26 23:32:00.497][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-26 23:32:00.498][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-26 23:32:00.499][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-26 23:32:00.500][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-26 23:32:00.501][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-26 23:32:00.503][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-26 23:32:00.504][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-06-26 23:32:00.505][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-26 23:32:00.507][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-26 23:32:00.508][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-06-26 23:32:00.509][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-26 23:32:00.511][self$setPropertyValue]
biodb.DEBUG[2024-06-26 23:32:00.512][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-26 23:32:00.513][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-26 23:32:00.513][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-26 23:32:00.513][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-26 23:32:00.513][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-06-26 23:32:00.513][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-06-26 23:32:00.515][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-26 23:32:00.516][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-26 23:32:00.517][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-26 23:32:00.518][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-26 23:32:00.520][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-26 23:32:00.521][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-26 23:32:00.522][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-26 23:32:00.523][self$setPropertyValue]
biodb.DEBUG[2024-06-26 23:32:00.524][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-26 23:32:00.526][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-26 23:32:00.527][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-26 23:32:00.528][self$setPropertyValue]
biodb.DEBUG[2024-06-26 23:32:00.530][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-06-26 23:32:00.532][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-26 23:32:00.533][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-06-26 23:32:00.534][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-26 23:32:00.535][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-26 23:32:00.537][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-26 23:32:00.538][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-26 23:32:00.539][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-26 23:32:00.540][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-26 23:32:00.541][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-06-26 23:32:00.543][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-26 23:32:00.545][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-26 23:32:00.546][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-06-26 23:32:00.547][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-26 23:32:00.548][self$setPropertyValue]
biodb.DEBUG[2024-06-26 23:32:00.549][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-26 23:32:00.551][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-26 23:32:00.551][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-26 23:32:00.551][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-26 23:32:00.551][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-06-26 23:32:00.551][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-06-26 23:32:00.552][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-26 23:32:00.553][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-26 23:32:00.554][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-26 23:32:00.556][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-26 23:32:00.557][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-26 23:32:00.558][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-26 23:32:00.559][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-26 23:32:00.560][self$setPropertyValue]
biodb.DEBUG[2024-06-26 23:32:00.561][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-26 23:32:00.563][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-26 23:32:00.564][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-26 23:32:00.565][self$setPropertyValue]
biodb.DEBUG[2024-06-26 23:32:00.567][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-06-26 23:32:00.569][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-26 23:32:00.570][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-06-26 23:32:00.571][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-26 23:32:00.572][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-26 23:32:00.574][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-26 23:32:00.575][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-26 23:32:00.576][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-26 23:32:00.577][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-26 23:32:00.579][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-06-26 23:32:00.580][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-26 23:32:00.581][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-06-26 23:32:00.582][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-06-26 23:32:00.583][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-26 23:32:00.585][self$setPropertyValue]
biodb.DEBUG[2024-06-26 23:32:00.586][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-26 23:32:00.588][self$setPropertyValue]
biodb.DEBUG[2024-06-26 23:32:00.590][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-26 23:32:00.592][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-26 23:32:00.594][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-26 23:32:00.596][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-26 23:32:00.598][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-26 23:32:00.599][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-26 23:32:00.601][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-26 23:32:00.603][self$setPropertyValue]
biodb.DEBUG[2024-06-26 23:32:00.605][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-26 23:32:00.606][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-26 23:32:00.608][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-26 23:32:00.609][self$setPropertyValue]
biodb.DEBUG[2024-06-26 23:32:00.611][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-06-26 23:32:00.614][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-26 23:32:00.617][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-06-26 23:32:00.619][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-26 23:32:00.620][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-26 23:32:00.621][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-26 23:32:00.622][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-26 23:32:00.623][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-26 23:32:00.625][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-26 23:32:00.626][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-06-26 23:32:00.628][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-26 23:32:00.629][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-06-26 23:32:00.630][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-06-26 23:32:00.631][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-26 23:32:00.633][self$setPropertyValue]
biodb.DEBUG[2024-06-26 23:32:00.635][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-26 23:32:00.637][self$setPropertyValue]
biodb.DEBUG[2024-06-26 23:32:00.639][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-26 23:32:00.641][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-26 23:32:00.643][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-26 23:32:00.644][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-26 23:32:00.646][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-26 23:32:00.647][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-26 23:32:00.648][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-26 23:32:00.649][self$setPropertyValue]
biodb.DEBUG[2024-06-26 23:32:00.650][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-26 23:32:00.651][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-26 23:32:00.653][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-26 23:32:00.654][self$setPropertyValue]
biodb.DEBUG[2024-06-26 23:32:00.656][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-26 23:32:00.657][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:32:00.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:32:00.659][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:32:00.660][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:32:00.661][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:32:00.663][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:32:00.664][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:32:00.665][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:32:00.666][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:32:00.667][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:32:00.668][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:32:00.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:32:00.671][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:32:00.672][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:32:00.673][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:32:00.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:32:00.675][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:32:00.677][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:32:00.678][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:32:00.679][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:32:00.680][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:32:00.681][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:32:00.682][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:32:00.684][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:32:00.686][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:32:00.688][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:32:00.690][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:32:00.692][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:32:00.694][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:32:00.696][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:32:00.698][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:32:00.699][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:32:00.701][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:32:00.703][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:32:00.705][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:32:00.718][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:32:00.720][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:32:00.722][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:32:00.725][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:32:00.727][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:32:00.729][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:32:00.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:32:00.733][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:32:00.734][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:32:00.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:32:00.738][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:32:00.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:32:00.742][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:32:00.744][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:32:00.745][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:32:00.747][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:32:00.749][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:32:00.751][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:32:00.753][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:32:00.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:32:00.756][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:32:00.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:32:00.760][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:32:00.762][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:32:00.764][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:32:00.766][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:32:00.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:32:00.769][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:32:00.771][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:32:00.772][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:32:00.774][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:32:00.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:32:00.777][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:32:00.778][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:32:00.780][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:32:00.782][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:32:00.783][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:32:00.785][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:32:00.787][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:32:00.789][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:32:00.790][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:32:00.792][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:32:00.794][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:32:00.796][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:32:00.797][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:32:00.799][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:32:00.801][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:32:00.803][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:32:00.805][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:32:00.806][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:32:00.808][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:32:00.810][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:32:00.812][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-06-26 23:32:00.814][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-06-26 23:32:00.817][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-06-26 23:32:00.820][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-06-26 23:32:00.822][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-06-26 23:32:00.825][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-06-26 23:32:00.827][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-06-26 23:32:00.830][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-06-26 23:32:00.832][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-06-26 23:32:00.835][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-06-26 23:32:00.837][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-06-26 23:32:00.840][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-06-26 23:32:00.842][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-06-26 23:32:00.845][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-06-26 23:32:00.847][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-06-26 23:32:00.850][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-06-26 23:32:00.853][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-06-26 23:32:00.855][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-06-26 23:32:00.858][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-06-26 23:32:00.860][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-06-26 23:32:00.863][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-06-26 23:32:00.866][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-06-26 23:32:00.868][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-06-26 23:32:00.871][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-06-26 23:32:00.874][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-06-26 23:32:00.876][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-06-26 23:32:00.879][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-06-26 23:32:00.881][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-06-26 23:32:00.884][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-06-26 23:32:00.887][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-06-26 23:32:00.889][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-06-26 23:32:00.892][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-06-26 23:32:00.894][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-06-26 23:32:00.897][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-06-26 23:32:00.900][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-06-26 23:32:00.902][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-06-26 23:32:00.905][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-06-26 23:32:00.907][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-06-26 23:32:00.910][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-06-26 23:32:00.912][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-06-26 23:32:00.914][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-06-26 23:32:00.917][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-06-26 23:32:00.919][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-06-26 23:32:00.921][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-06-26 23:32:00.923][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-06-26 23:32:00.924][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-06-26 23:32:00.926][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-06-26 23:32:00.934][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-06-26 23:32:00.936][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-06-26 23:32:00.939][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-06-26 23:32:00.941][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-06-26 23:32:00.945][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-06-26 23:32:00.947][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-06-26 23:32:00.949][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-06-26 23:32:00.951][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-06-26 23:32:00.952][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-06-26 23:32:00.954][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-06-26 23:32:00.959][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-06-26 23:32:00.961][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-06-26 23:32:00.963][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-06-26 23:32:00.964][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-06-26 23:32:00.966][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-06-26 23:32:00.968][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-06-26 23:32:00.970][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-06-26 23:32:00.972][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-06-26 23:32:00.975][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-06-26 23:32:00.978][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-06-26 23:32:00.980][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-06-26 23:32:00.983][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-06-26 23:32:00.986][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-06-26 23:32:00.988][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-06-26 23:32:00.991][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-06-26 23:32:00.994][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-06-26 23:32:00.997][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-06-26 23:32:01.001][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-06-26 23:32:01.004][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-06-26 23:32:01.008][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-06-26 23:32:01.010][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-06-26 23:32:01.013][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-06-26 23:32:01.016][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-06-26 23:32:01.019][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-06-26 23:32:01.021][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-06-26 23:32:01.024][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-06-26 23:32:01.027][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-06-26 23:32:01.031][initialize] This is biodb version 1.12.0.
biodb.DEBUG[2024-06-26 23:32:01.033][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-26 23:32:01.035][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:32:01.037][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:32:01.039][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:32:01.041][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:32:01.043][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:32:01.044][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:32:01.045][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:32:01.046][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:32:01.048][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:32:01.049][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:32:01.050][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:32:01.051][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:32:01.052][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:32:01.054][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:32:01.055][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:32:01.056][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:32:01.057][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:32:01.058][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:32:01.060][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:32:01.061][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:32:01.062][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:32:01.063][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:32:01.064][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:32:01.065][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:32:01.066][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:32:01.068][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:32:01.070][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:32:01.072][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:32:01.074][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:32:01.075][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:32:01.077][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:32:01.078][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:32:01.079][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:32:01.080][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:32:01.081][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:32:01.082][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:32:01.083][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:32:01.085][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:32:01.086][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:32:01.088][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:32:01.090][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:32:01.092][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:32:01.094][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:32:01.095][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:32:01.097][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:32:01.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:32:01.101][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:32:01.102][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:32:01.104][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:32:01.106][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:32:01.108][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:32:01.110][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:32:01.112][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:32:01.114][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:32:01.116][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:32:01.118][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:32:01.119][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:32:01.120][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:32:01.121][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:32:01.122][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:32:01.124][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:32:01.125][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:32:01.126][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:32:01.127][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:32:01.128][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:32:01.130][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:32:01.131][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:32:01.132][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:32:01.133][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:32:01.134][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:32:01.136][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:32:01.138][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:32:01.139][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:32:01.140][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:32:01.141][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:32:01.142][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:32:01.143][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:32:01.145][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:32:01.147][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:32:01.148][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:32:01.149][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:32:01.150][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:32:01.151][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:32:01.153][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:32:01.155][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:32:01.156][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:32:01.158][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:32:01.159][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:32:01.160][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:32:01.161][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:32:01.163][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:32:01.164][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:32:01.165][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:32:01.167][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:32:01.168][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:32:01.170][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:32:01.171][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:32:01.173][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:32:01.175][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:32:01.177][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:32:01.178][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:32:01.180][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:32:01.181][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:32:01.182][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:32:01.183][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:32:01.185][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:32:01.186][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:32:01.188][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:32:01.190][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:32:01.192][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:32:01.194][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:32:01.195][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:32:01.196][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:32:01.198][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:32:01.199][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:32:01.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:32:01.202][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 23:32:01.203][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:32:01.204][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:32:01.205][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:32:01.206][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:32:01.207][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:32:01.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:32:01.233][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.19-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2024-06-26 23:32:01.237][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2024-06-26 23:32:01.241][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-26 23:32:01.243][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-06-26 23:32:01.245][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-26 23:32:01.247][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-26 23:32:01.249][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-26 23:32:01.250][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-26 23:32:01.252][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-06-26 23:32:01.253][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2024-06-26 23:32:01.255][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-06-26 23:32:01.256][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-26 23:32:01.257][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-26 23:32:01.259][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2024-06-26 23:32:01.260][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-26 23:32:01.262][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-06-26 23:32:01.262][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2024-06-26 23:32:01.262][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-06-26 23:32:01.262][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-06-26 23:32:01.262][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-06-26 23:32:01.262][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2024-06-26 23:32:01.262][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-06-26 23:32:01.262][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-06-26 23:32:01.262][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2024-06-26 23:32:01.262][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2024-06-26 23:32:01.262][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-06-26 23:32:01.264][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-06-26 23:32:01.265][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-26 23:32:01.265][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-26 23:32:01.265][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-26 23:32:01.267][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-06-26 23:32:01.269][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-26 23:32:01.270][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-26 23:32:01.272][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-26 23:32:01.274][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-26 23:32:01.276][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-26 23:32:01.279][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-26 23:32:01.281][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-26 23:32:01.281][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2024-06-26 23:32:01.284][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-26 23:32:01.286][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-26 23:32:01.288][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-06-26 23:32:01.290][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2024-06-26 23:32:01.290][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2024-06-26 23:32:01.292][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-06-26 23:32:01.295][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-06-26 23:32:01.298][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2024-06-26 23:32:01.300][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-06-26 23:32:01.303][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-06-26 23:32:01.306][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-06-26 23:32:01.312][super$initialize] Initialize connector chebi.
biodb.DEBUG[2024-06-26 23:32:01.314][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2024-06-26 23:32:01.316][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2024-06-26 23:32:01.320][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2024-06-26 23:32:01.323][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-26 23:32:01.325][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-26 23:32:01.328][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2024-06-26 23:32:01.339][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2024-06-26 23:32:01.343][biodb::testThat]
biodb.INFO [2024-06-26 23:32:01.346][biodb::testThat] Running test function test.chebi.encoding.issue.in.xml (" ChEBI encoding issue in XML is handled. ").
biodb.INFO [2024-06-26 23:32:01.348][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-26 23:32:01.350][biodb::testThat]
biodb.DEBUG[2024-06-26 23:32:01.356][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2024-06-26 23:32:01.363][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-26 23:32:01.366][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2024-06-26 23:32:01.369][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-26 23:32:01.373][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2024-06-26 23:32:01.379][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI ID&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-06-26 23:32:01.385][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-26 23:32:01.388][cch$loadFileContent] Trying to load 1 files from cache: [1]: "04c26672f8368e71348af4b34238160e".
biodb.TRACE[2024-06-26 23:32:01.390][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-26 23:32:01.394][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/04c26672f8368e71348af4b34238160e.content".
biodb.DEBUG[2024-06-26 23:32:01.401][private$loadEntries] Creating entries from ids [1]: "2571".
biodb.DEBUG[2024-06-26 23:32:01.403][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-26 23:32:01.407][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2571".
biodb.TRACE[2024-06-26 23:32:01.409][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-26 23:32:01.412][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-26 23:32:01.414][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-06-26 23:32:01.416][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-06-26 23:32:01.418][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-26 23:32:01.420][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-26 23:32:01.425][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:32:01.426][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:32:01.428][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:32:01.442][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:32:01.444][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:32:01.446][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:32:01.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 23:32:01.451][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2571".
biodb.DEBUG[2024-06-26 23:32:01.456][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-26 23:32:01.458][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-26 23:32:01.461][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2571".
biodb.TRACE[2024-06-26 23:32:01.815][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2571).
biodb.DEBUG[2024-06-26 23:32:02.560][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-26 23:32:02.563][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/52df2611aa7f9f4c531cce8ac62e2fa0.content"
biodb.TRACE[2024-06-26 23:32:02.570][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/52df2611aa7f9f4c531cce8ac62e2fa0.request"
biodb.TRACE[2024-06-26 23:32:02.574][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2571.xml"
biodb.DEBUG[2024-06-26 23:32:02.578][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-26 23:32:02.580][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-06-26 23:32:02.581][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-06-26 23:32:02.583][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 23:32:02.585][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:32:02.586][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:32:02.594][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:32:02.595][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:32:02.596][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:32:02.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 23:32:02.604][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:32:02.605][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:32:02.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:32:02.608][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:32:02.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:32:02.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:32:02.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:32:02.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:32:02.615][ef$get] Asked field names are: charge.
biodb.TRACE[2024-06-26 23:32:02.616][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-26 23:32:02.617][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:32:02.619][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:32:02.621][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-06-26 23:32:02.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-06-26 23:32:02.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:32:02.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:32:02.626][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 23:32:02.627][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 23:32:02.628][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:32:02.630][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:32:02.631][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 23:32:02.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 23:32:02.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:32:02.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:32:02.637][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 23:32:02.638][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 23:32:02.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:32:02.640][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:32:02.642][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 23:32:02.644][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 23:32:02.645][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:32:02.646][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:32:02.648][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:32:02.649][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:32:02.650][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:32:02.651][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:32:02.653][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:32:02.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 23:32:02.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:32:02.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:32:02.658][ef$get] Asked field names are: mass.
biodb.TRACE[2024-06-26 23:32:02.660][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:32:02.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:32:02.662][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:32:02.664][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-06-26 23:32:02.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-26 23:32:02.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:32:02.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:32:02.669][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:32:02.670][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:32:02.672][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:32:02.673][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:32:02.675][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:32:02.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 23:32:02.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:32:02.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:32:02.680][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:32:02.681][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:32:02.682][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:32:02.683][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:32:02.686][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 23:32:02.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 23:32:02.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:32:02.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:32:02.691][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-26 23:32:02.693][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-26 23:32:02.694][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:32:02.695][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:32:02.697][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-06-26 23:32:02.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-06-26 23:32:02.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:32:02.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:32:02.703][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 23:32:02.704][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 23:32:02.705][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:32:02.707][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:32:02.708][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 23:32:02.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 23:32:02.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:32:02.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:32:02.714][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:32:02.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:32:02.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:32:02.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:32:02.719][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:32:02.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:32:02.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:32:02.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:32:02.724][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:32:02.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:32:02.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:32:02.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:32:02.729][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 23:32:02.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 23:32:02.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:32:02.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:32:02.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:32:02.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:32:02.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:32:02.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:32:02.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:32:02.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:32:02.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:32:02.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:32:02.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:32:02.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:32:02.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:32:02.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:32:02.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:32:02.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:32:02.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:32:02.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:32:02.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:32:02.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:32:02.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:32:02.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 23:32:02.759][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 23:32:02.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 23:32:02.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 23:32:02.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 23:32:02.764][self$createEntryFromContent] Accession numbers: 2571.
biodb.INFO [2024-06-26 23:32:02.781][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-06-26 23:32:02.784][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2024-06-26 23:32:02.786][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2024-06-26 23:32:02.788][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-06-26 23:32:02.790][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 23:32:02.792][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 23:32:02.794][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 23:32:02.796][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 23:32:02.798][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 23:32:02.799][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 386 ]
>
> proc.time()
user system elapsed
27.29 2.67 69.51
biodbChebi.Rcheck/biodbChebi-Ex.timings
| name | user | system | elapsed | |
| ChebiConn | 4.89 | 2.75 | 203.39 | |
| ChebiEntry | 0.97 | 0.01 | 1.01 | |