Back to Multiple platform build/check report for BioC 3.19: simplified long |
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This page was generated on 2024-05-30 11:35:48 -0400 (Thu, 30 May 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4753 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4518 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1541/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
PepsNMR 1.22.0 (landing page) Manon Martin
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kjohnson3 | macOS 13.6.5 Ventura / arm64 | see weekly results here | ||||||||||||
To the developers/maintainers of the PepsNMR package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/PepsNMR.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: PepsNMR |
Version: 1.22.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:PepsNMR.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings PepsNMR_1.22.0.tar.gz |
StartedAt: 2024-05-29 22:48:25 -0400 (Wed, 29 May 2024) |
EndedAt: 2024-05-29 23:00:46 -0400 (Wed, 29 May 2024) |
EllapsedTime: 741.1 seconds |
RetCode: 0 |
Status: OK |
CheckDir: PepsNMR.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:PepsNMR.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings PepsNMR_1.22.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.19-bioc/meat/PepsNMR.Rcheck’ * using R version 4.4.0 (2024-04-24) * using platform: x86_64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Monterey 12.7.1 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘PepsNMR/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘PepsNMR’ version ‘1.22.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘PepsNMR’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE checkRd: (-1) Normalization.Rd:47: Escaped LaTeX specials: \& * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed PEPSNMR-package 301.968 18.655 324.287 PreprocessingChain 295.506 18.765 317.418 Warping 16.676 1.553 18.456 * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/Users/biocbuild/bbs-3.19-bioc/meat/PepsNMR.Rcheck/00check.log’ for details.
PepsNMR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL PepsNMR ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’ * installing *source* package ‘PepsNMR’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (PepsNMR)
PepsNMR.Rcheck/PepsNMR-Ex.timings
name | user | system | elapsed | |
Apodization | 0.589 | 0.064 | 0.663 | |
BaselineCorrection | 0.531 | 0.093 | 0.657 | |
Bucketing | 0.048 | 0.003 | 0.051 | |
Draw | 0.992 | 0.065 | 1.071 | |
DrawPCA | 0.826 | 0.032 | 0.863 | |
DrawSignal | 0.523 | 0.021 | 0.550 | |
FirstOrderPhaseCorrection | 0.037 | 0.004 | 0.041 | |
FourierTransform | 0.024 | 0.003 | 0.028 | |
GroupDelayCorrection | 0.046 | 0.015 | 0.062 | |
InternalReferencing | 0.027 | 0.005 | 0.032 | |
NegativeValuesZeroing | 0.014 | 0.002 | 0.016 | |
Normalization | 0.012 | 0.001 | 0.013 | |
PEPSNMR-package | 301.968 | 18.655 | 324.287 | |
PreprocessingChain | 295.506 | 18.765 | 317.418 | |
ReadFids | 0.279 | 0.056 | 0.338 | |
RegionRemoval | 0.013 | 0.002 | 0.015 | |
SolventSuppression | 0.107 | 0.047 | 0.158 | |
Warping | 16.676 | 1.553 | 18.456 | |
WindowSelection | 0.030 | 0.001 | 0.032 | |
ZeroFilling | 0.075 | 0.002 | 0.078 | |
ZeroOrderPhaseCorrection | 0.105 | 0.031 | 0.138 | |
ZoneAggregation | 0.250 | 0.015 | 0.268 | |