Back to Multiple platform build/check report for BioC 3.19: simplified long |
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This page was generated on 2024-07-12 17:42 -0400 (Fri, 12 Jul 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4741 |
palomino7 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4483 |
merida1 | macOS 12.7.4 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4512 |
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4461 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 987/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
HPiP 1.10.0 (landing page) Matineh Rahmatbakhsh
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 12.7.4 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | ![]() | ||||||||
To the developers/maintainers of the HPiP package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: HPiP |
Version: 1.10.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HPiP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HPiP_1.10.0.tar.gz |
StartedAt: 2024-07-11 22:35:04 -0400 (Thu, 11 Jul 2024) |
EndedAt: 2024-07-11 22:40:46 -0400 (Thu, 11 Jul 2024) |
EllapsedTime: 342.6 seconds |
RetCode: 0 |
Status: OK |
CheckDir: HPiP.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HPiP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HPiP_1.10.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.19-bioc/meat/HPiP.Rcheck’ * using R version 4.4.1 (2024-06-14) * using platform: aarch64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Ventura 13.6.6 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘HPiP/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘HPiP’ version ‘1.10.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘HPiP’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE License stub is invalid DCF. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE checkRd: (-1) getHPI.Rd:29: Lost braces 29 | then the Kronecker product is the code{(pm × qn)} block matrix | ^ * checking Rd metadata ... OK * checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: ‘ftrCOOL’ * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking R/sysdata.rda ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed var_imp 54.267 1.969 56.272 corr_plot 52.664 1.950 54.685 FSmethod 52.177 1.886 54.172 pred_ensembel 16.154 0.353 13.716 enrichfindP 0.501 0.076 9.592 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘runTests.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 3 NOTEs See ‘/Users/biocbuild/bbs-3.19-bioc/meat/HPiP.Rcheck/00check.log’ for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’ * installing *source* package ‘HPiP’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R version 4.4.1 (2024-06-14) -- "Race for Your Life" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: aarch64-apple-darwin20 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > BiocGenerics:::testPackage('HPiP') No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE avNNet Loading required package: ggplot2 Loading required package: lattice Fitting Repeat 1 # weights: 103 initial value 101.074099 final value 94.052910 converged Fitting Repeat 2 # weights: 103 initial value 99.448800 final value 94.052910 converged Fitting Repeat 3 # weights: 103 initial value 97.863726 final value 94.052910 converged Fitting Repeat 4 # weights: 103 initial value 94.051691 iter 10 value 90.582049 iter 20 value 85.812728 iter 30 value 85.287405 iter 40 value 85.278291 final value 85.278094 converged Fitting Repeat 5 # weights: 103 initial value 101.081295 final value 94.052910 converged Fitting Repeat 1 # weights: 305 initial value 101.229538 final value 94.052910 converged Fitting Repeat 2 # weights: 305 initial value 113.168726 final value 94.052911 converged Fitting Repeat 3 # weights: 305 initial value 104.136376 iter 10 value 93.992007 final value 93.976471 converged Fitting Repeat 4 # weights: 305 initial value 103.092918 final value 94.052910 converged Fitting Repeat 5 # weights: 305 initial value 113.797758 final value 94.052910 converged Fitting Repeat 1 # weights: 507 initial value 102.412767 final value 94.052910 converged Fitting Repeat 2 # weights: 507 initial value 102.012404 iter 10 value 85.374435 iter 20 value 85.224592 final value 85.220334 converged Fitting Repeat 3 # weights: 507 initial value 129.310606 final value 94.052910 converged Fitting Repeat 4 # weights: 507 initial value 105.866809 final value 94.052910 converged Fitting Repeat 5 # weights: 507 initial value 108.296518 final value 94.008696 converged Fitting Repeat 1 # weights: 103 initial value 99.298829 iter 10 value 94.054874 iter 20 value 93.545846 iter 30 value 93.489785 iter 40 value 92.660620 iter 50 value 90.398687 iter 60 value 90.189871 iter 70 value 88.874147 iter 80 value 86.542545 iter 90 value 84.834861 iter 100 value 84.358522 final value 84.358522 stopped after 100 iterations Fitting Repeat 2 # weights: 103 initial value 102.015616 iter 10 value 94.056787 iter 20 value 93.223007 iter 30 value 93.065054 iter 40 value 90.051619 iter 50 value 88.727944 iter 60 value 86.878612 iter 70 value 86.301361 iter 80 value 86.151310 iter 90 value 86.098022 iter 100 value 86.066287 final value 86.066287 stopped after 100 iterations Fitting Repeat 3 # weights: 103 initial value 99.441249 iter 10 value 94.055449 iter 20 value 91.549609 iter 30 value 88.606918 iter 40 value 86.695616 iter 50 value 86.097213 iter 60 value 86.061936 iter 70 value 86.049437 final value 86.049422 converged Fitting Repeat 4 # weights: 103 initial value 101.471218 iter 10 value 94.109020 iter 20 value 94.055125 iter 30 value 94.023731 iter 40 value 92.472256 iter 50 value 88.786061 iter 60 value 88.317476 iter 70 value 86.612655 iter 80 value 84.035621 iter 90 value 83.766099 iter 100 value 83.559894 final value 83.559894 stopped after 100 iterations Fitting Repeat 5 # weights: 103 initial value 99.314409 iter 10 value 94.094223 iter 20 value 94.054847 iter 30 value 93.601856 iter 40 value 92.197088 iter 50 value 88.593380 iter 60 value 84.607373 iter 70 value 83.291154 iter 80 value 83.102644 iter 90 value 82.839528 iter 100 value 82.802823 final value 82.802823 stopped after 100 iterations Fitting Repeat 1 # weights: 305 initial value 106.041722 iter 10 value 91.811120 iter 20 value 85.590641 iter 30 value 84.341625 iter 40 value 83.864214 iter 50 value 83.586727 iter 60 value 83.242598 iter 70 value 82.945497 iter 80 value 82.250834 iter 90 value 81.294616 iter 100 value 81.210239 final value 81.210239 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 99.850542 iter 10 value 94.289903 iter 20 value 91.019988 iter 30 value 89.270740 iter 40 value 86.674309 iter 50 value 85.930305 iter 60 value 84.027566 iter 70 value 83.311855 iter 80 value 82.834117 iter 90 value 82.120111 iter 100 value 81.941838 final value 81.941838 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 115.592885 iter 10 value 93.773600 iter 20 value 93.544116 iter 30 value 90.865301 iter 40 value 84.839562 iter 50 value 84.451052 iter 60 value 84.180392 iter 70 value 83.385025 iter 80 value 82.677427 iter 90 value 82.303998 iter 100 value 82.232531 final value 82.232531 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 104.333428 iter 10 value 94.057284 iter 20 value 93.988539 iter 30 value 86.329736 iter 40 value 85.916038 iter 50 value 85.269373 iter 60 value 84.839197 iter 70 value 84.572339 iter 80 value 84.227587 iter 90 value 83.392316 iter 100 value 82.400995 final value 82.400995 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 100.945769 iter 10 value 94.012340 iter 20 value 90.209308 iter 30 value 87.826556 iter 40 value 85.972176 iter 50 value 83.213639 iter 60 value 82.931455 iter 70 value 82.510757 iter 80 value 81.557262 iter 90 value 81.301144 iter 100 value 81.116798 final value 81.116798 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 124.922388 iter 10 value 94.219144 iter 20 value 92.794489 iter 30 value 87.376633 iter 40 value 85.410255 iter 50 value 83.914243 iter 60 value 82.554587 iter 70 value 81.851091 iter 80 value 81.120289 iter 90 value 80.992548 iter 100 value 80.957268 final value 80.957268 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 111.539978 iter 10 value 93.580729 iter 20 value 93.485176 iter 30 value 92.704461 iter 40 value 90.839480 iter 50 value 86.618278 iter 60 value 84.415222 iter 70 value 83.260829 iter 80 value 82.272172 iter 90 value 81.934019 iter 100 value 81.796353 final value 81.796353 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 113.412968 iter 10 value 93.891315 iter 20 value 88.573757 iter 30 value 86.810882 iter 40 value 86.436877 iter 50 value 86.041020 iter 60 value 85.627284 iter 70 value 85.188455 iter 80 value 84.551129 iter 90 value 83.623100 iter 100 value 83.182157 final value 83.182157 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 118.441744 iter 10 value 97.071220 iter 20 value 96.814923 iter 30 value 93.992460 iter 40 value 91.103010 iter 50 value 87.930484 iter 60 value 85.215798 iter 70 value 84.165775 iter 80 value 83.106144 iter 90 value 82.618142 iter 100 value 82.266132 final value 82.266132 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 116.217327 iter 10 value 94.147160 iter 20 value 91.215378 iter 30 value 86.594531 iter 40 value 85.208947 iter 50 value 84.769409 iter 60 value 84.678196 iter 70 value 83.374929 iter 80 value 82.247503 iter 90 value 81.549625 iter 100 value 81.414100 final value 81.414100 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 104.135472 final value 94.054486 converged Fitting Repeat 2 # weights: 103 initial value 98.922436 iter 10 value 94.054671 iter 20 value 93.869730 iter 30 value 89.801951 final value 89.801035 converged Fitting Repeat 3 # weights: 103 initial value 96.796899 final value 94.054633 converged Fitting Repeat 4 # weights: 103 initial value 107.419525 iter 10 value 94.054458 iter 20 value 94.052954 iter 30 value 87.882893 iter 40 value 87.364247 iter 50 value 86.798426 iter 60 value 86.689880 iter 70 value 86.687336 final value 86.687331 converged Fitting Repeat 5 # weights: 103 initial value 101.112662 final value 94.010322 converged Fitting Repeat 1 # weights: 305 initial value 104.891601 iter 10 value 92.622406 iter 20 value 92.568498 iter 30 value 92.567273 iter 40 value 89.170422 iter 50 value 86.210731 iter 60 value 86.062263 iter 70 value 85.508452 iter 80 value 85.272774 iter 90 value 85.272471 iter 100 value 85.271917 final value 85.271917 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 102.299565 iter 10 value 94.013435 iter 20 value 94.009250 iter 30 value 90.646200 iter 40 value 86.121713 iter 50 value 83.832817 iter 60 value 82.614413 iter 70 value 81.681379 iter 80 value 81.040482 iter 90 value 81.039367 iter 100 value 80.996306 final value 80.996306 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 99.600821 iter 10 value 93.996436 iter 20 value 93.935106 iter 30 value 93.192637 iter 40 value 85.794821 iter 50 value 83.357425 iter 60 value 82.303506 final value 82.267420 converged Fitting Repeat 4 # weights: 305 initial value 95.786983 iter 10 value 94.013851 iter 20 value 93.478825 iter 30 value 93.476231 iter 40 value 93.342285 iter 50 value 89.043543 iter 60 value 89.010821 iter 70 value 89.010709 iter 80 value 89.010486 iter 90 value 89.010385 iter 100 value 89.010274 final value 89.010274 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 101.209670 iter 10 value 93.947490 iter 20 value 93.944675 iter 30 value 93.702943 iter 40 value 92.972425 final value 92.971242 converged Fitting Repeat 1 # weights: 507 initial value 101.072580 iter 10 value 93.297517 iter 20 value 92.175546 iter 30 value 85.388707 iter 40 value 85.367262 iter 50 value 85.366279 iter 60 value 85.332289 iter 70 value 85.229435 iter 80 value 85.210818 final value 85.210775 converged Fitting Repeat 2 # weights: 507 initial value 102.966821 iter 10 value 94.061096 iter 20 value 94.008400 iter 30 value 93.522241 iter 40 value 93.366002 iter 50 value 93.353442 final value 93.353425 converged Fitting Repeat 3 # weights: 507 initial value 112.314690 iter 10 value 94.061822 iter 20 value 94.053701 iter 30 value 93.615628 iter 40 value 93.536828 iter 50 value 93.519048 iter 50 value 93.519048 iter 50 value 93.519048 final value 93.519048 converged Fitting Repeat 4 # weights: 507 initial value 100.275410 iter 10 value 93.952655 iter 20 value 93.564553 iter 30 value 93.387758 final value 93.387729 converged Fitting Repeat 5 # weights: 507 initial value 111.502321 iter 10 value 94.061079 iter 20 value 94.053179 iter 30 value 93.390893 iter 40 value 90.119632 iter 50 value 85.437370 iter 60 value 85.365163 iter 70 value 85.308921 final value 85.226069 converged Fitting Repeat 1 # weights: 103 initial value 100.554641 final value 94.052910 converged Fitting Repeat 2 # weights: 103 initial value 96.927454 iter 10 value 88.454941 iter 20 value 86.449982 iter 30 value 86.446450 final value 86.446402 converged Fitting Repeat 3 # weights: 103 initial value 94.259548 final value 93.915746 converged Fitting Repeat 4 # weights: 103 initial value 94.444851 final value 94.052910 converged Fitting Repeat 5 # weights: 103 initial value 95.744749 final value 94.052910 converged Fitting Repeat 1 # weights: 305 initial value 104.411971 final value 94.052910 converged Fitting Repeat 2 # weights: 305 initial value 100.744885 final value 93.915746 converged Fitting Repeat 3 # weights: 305 initial value 102.683805 final value 94.052910 converged Fitting Repeat 4 # weights: 305 initial value 95.742140 final value 94.052910 converged Fitting Repeat 5 # weights: 305 initial value 117.732708 final value 94.052910 converged Fitting Repeat 1 # weights: 507 initial value 115.379288 final value 93.915746 converged Fitting Repeat 2 # weights: 507 initial value 98.221152 final value 93.915746 converged Fitting Repeat 3 # weights: 507 initial value 94.585438 iter 10 value 94.022599 iter 10 value 94.022599 iter 10 value 94.022599 final value 94.022599 converged Fitting Repeat 4 # weights: 507 initial value 95.180397 iter 10 value 93.280127 final value 93.264439 converged Fitting Repeat 5 # weights: 507 initial value 98.062933 iter 10 value 91.554445 iter 20 value 91.183289 iter 30 value 91.182375 iter 40 value 90.460304 iter 50 value 90.122794 final value 90.062323 converged Fitting Repeat 1 # weights: 103 initial value 102.974765 iter 10 value 90.363335 iter 20 value 85.840884 iter 30 value 85.320457 iter 40 value 85.232815 iter 50 value 84.728782 iter 60 value 84.609287 iter 70 value 84.605030 final value 84.603601 converged Fitting Repeat 2 # weights: 103 initial value 96.237950 iter 10 value 94.030814 iter 20 value 93.859388 iter 30 value 91.974235 iter 40 value 91.568973 iter 50 value 91.124814 iter 60 value 91.043744 iter 70 value 91.023405 iter 80 value 90.755921 iter 90 value 88.965114 iter 100 value 85.218410 final value 85.218410 stopped after 100 iterations Fitting Repeat 3 # weights: 103 initial value 104.232714 iter 10 value 94.048450 iter 20 value 89.883619 iter 30 value 87.296766 iter 40 value 84.619570 iter 50 value 83.990923 iter 60 value 83.572897 iter 70 value 83.405803 iter 80 value 83.309859 iter 90 value 83.272191 iter 100 value 83.198330 final value 83.198330 stopped after 100 iterations Fitting Repeat 4 # weights: 103 initial value 96.340856 iter 10 value 90.605773 iter 20 value 86.044031 iter 30 value 83.770212 iter 40 value 83.694596 iter 50 value 83.593313 iter 60 value 83.307016 iter 70 value 83.280538 iter 80 value 83.218096 iter 90 value 83.185075 final value 83.184910 converged Fitting Repeat 5 # weights: 103 initial value 101.195571 iter 10 value 94.056796 iter 20 value 93.585204 iter 30 value 88.469495 iter 40 value 86.768367 iter 50 value 84.687878 iter 60 value 84.258656 iter 70 value 84.226668 final value 84.226623 converged Fitting Repeat 1 # weights: 305 initial value 109.521166 iter 10 value 94.157259 iter 20 value 93.892329 iter 30 value 93.696370 iter 40 value 93.362398 iter 50 value 89.924282 iter 60 value 87.251556 iter 70 value 86.838392 iter 80 value 85.739654 iter 90 value 83.367713 iter 100 value 82.923502 final value 82.923502 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 101.236417 iter 10 value 93.724433 iter 20 value 86.140436 iter 30 value 85.282366 iter 40 value 84.682356 iter 50 value 84.297639 iter 60 value 84.225502 iter 70 value 84.108098 iter 80 value 82.191220 iter 90 value 82.049360 iter 100 value 81.961702 final value 81.961702 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 108.805183 iter 10 value 94.066655 iter 20 value 94.018340 iter 30 value 92.964193 iter 40 value 87.422442 iter 50 value 86.270988 iter 60 value 83.868071 iter 70 value 83.029200 iter 80 value 82.024526 iter 90 value 81.695671 iter 100 value 81.443779 final value 81.443779 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 110.625968 iter 10 value 93.888178 iter 20 value 87.766657 iter 30 value 83.370037 iter 40 value 82.487441 iter 50 value 81.943384 iter 60 value 81.458036 iter 70 value 80.946239 iter 80 value 80.858633 iter 90 value 80.800439 iter 100 value 80.669836 final value 80.669836 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 105.599589 iter 10 value 93.968221 iter 20 value 91.861932 iter 30 value 90.557046 iter 40 value 89.107182 iter 50 value 88.892473 iter 60 value 88.806319 iter 70 value 88.720131 iter 80 value 86.329025 iter 90 value 83.275740 iter 100 value 82.216165 final value 82.216165 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 124.254558 iter 10 value 93.811188 iter 20 value 89.880186 iter 30 value 86.994463 iter 40 value 86.376052 iter 50 value 85.971620 iter 60 value 85.532383 iter 70 value 84.308383 iter 80 value 83.585468 iter 90 value 82.673007 iter 100 value 82.034717 final value 82.034717 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 113.370222 iter 10 value 94.183997 iter 20 value 92.859796 iter 30 value 89.586131 iter 40 value 88.915250 iter 50 value 86.687562 iter 60 value 83.424444 iter 70 value 82.770749 iter 80 value 82.525866 iter 90 value 81.952259 iter 100 value 81.901026 final value 81.901026 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 104.347927 iter 10 value 93.921364 iter 20 value 90.775982 iter 30 value 88.651789 iter 40 value 87.980892 iter 50 value 86.252765 iter 60 value 85.759909 iter 70 value 84.962627 iter 80 value 83.687913 iter 90 value 81.522762 iter 100 value 81.056970 final value 81.056970 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 118.290283 iter 10 value 94.369176 iter 20 value 85.651219 iter 30 value 84.940673 iter 40 value 83.549271 iter 50 value 82.186158 iter 60 value 81.102527 iter 70 value 80.767750 iter 80 value 80.459478 iter 90 value 80.437258 iter 100 value 80.404503 final value 80.404503 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 136.860769 iter 10 value 94.134116 iter 20 value 87.079273 iter 30 value 84.690426 iter 40 value 84.377912 iter 50 value 83.661551 iter 60 value 83.348853 iter 70 value 83.247842 iter 80 value 82.810502 iter 90 value 81.970397 iter 100 value 81.263843 final value 81.263843 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 103.566016 iter 10 value 94.054911 iter 20 value 94.042088 iter 30 value 89.660909 iter 40 value 86.292482 iter 50 value 86.203674 iter 60 value 84.139108 iter 70 value 84.076219 iter 80 value 83.541609 iter 90 value 82.829414 iter 100 value 82.820995 final value 82.820995 stopped after 100 iterations Fitting Repeat 2 # weights: 103 initial value 101.056902 iter 10 value 94.059722 iter 20 value 94.057199 iter 30 value 94.050983 iter 40 value 87.534338 iter 50 value 87.399603 iter 60 value 87.399198 iter 70 value 86.657002 iter 80 value 86.315390 final value 86.315388 converged Fitting Repeat 3 # weights: 103 initial value 95.858869 final value 94.054574 converged Fitting Repeat 4 # weights: 103 initial value 104.798374 final value 94.054653 converged Fitting Repeat 5 # weights: 103 initial value 97.428540 final value 94.054721 converged Fitting Repeat 1 # weights: 305 initial value 96.815796 iter 10 value 94.056168 iter 20 value 93.926278 iter 30 value 93.697135 iter 40 value 87.943332 iter 50 value 87.942278 iter 60 value 87.938497 iter 70 value 86.438679 iter 80 value 86.338509 iter 90 value 83.778391 iter 100 value 81.641781 final value 81.641781 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 106.870026 iter 10 value 93.919961 iter 20 value 93.783551 iter 30 value 88.058419 final value 88.058340 converged Fitting Repeat 3 # weights: 305 initial value 104.047537 iter 10 value 93.701705 iter 20 value 93.698311 iter 30 value 93.697335 iter 40 value 89.581039 iter 50 value 86.583759 iter 60 value 85.669461 iter 70 value 84.020405 iter 80 value 83.738632 iter 90 value 83.517384 iter 100 value 83.329603 final value 83.329603 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 105.465804 iter 10 value 94.057951 iter 20 value 93.840752 iter 30 value 85.818959 iter 40 value 85.133560 iter 50 value 85.133170 iter 60 value 84.475262 iter 70 value 84.088661 iter 80 value 83.757087 iter 90 value 83.736489 iter 100 value 83.735068 final value 83.735068 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 97.142603 iter 10 value 92.322856 iter 20 value 92.310830 iter 30 value 92.308565 iter 40 value 92.287966 iter 50 value 92.256307 iter 60 value 92.252655 iter 70 value 92.178932 final value 92.173720 converged Fitting Repeat 1 # weights: 507 initial value 109.324559 iter 10 value 93.924399 iter 20 value 93.918353 iter 30 value 93.915899 iter 40 value 93.810812 iter 50 value 89.513282 iter 60 value 87.930272 iter 70 value 82.774286 iter 80 value 80.929807 iter 90 value 80.750689 iter 100 value 80.718899 final value 80.718899 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 97.166221 iter 10 value 93.805839 final value 92.831529 converged Fitting Repeat 3 # weights: 507 initial value 129.680220 iter 10 value 88.642137 iter 20 value 88.622972 iter 30 value 87.706802 iter 40 value 87.567979 iter 50 value 87.564765 final value 87.564654 converged Fitting Repeat 4 # weights: 507 initial value 114.860615 iter 10 value 93.924082 iter 20 value 93.916705 iter 30 value 93.697518 final value 93.697478 converged Fitting Repeat 5 # weights: 507 initial value 101.135309 iter 10 value 93.900455 iter 20 value 93.895890 iter 30 value 88.602293 iter 40 value 86.102004 iter 50 value 85.943981 final value 85.943831 converged Fitting Repeat 1 # weights: 103 initial value 95.888625 final value 94.484211 converged Fitting Repeat 2 # weights: 103 initial value 96.959467 iter 10 value 86.092617 iter 20 value 82.148107 final value 82.147604 converged Fitting Repeat 3 # weights: 103 initial value 95.745718 final value 94.484211 converged Fitting Repeat 4 # weights: 103 initial value 95.166803 final value 94.484211 converged Fitting Repeat 5 # weights: 103 initial value 100.720918 final value 94.484211 converged Fitting Repeat 1 # weights: 305 initial value 97.755846 final value 94.484211 converged Fitting Repeat 2 # weights: 305 initial value 96.183493 final value 94.484211 converged Fitting Repeat 3 # weights: 305 initial value 103.029410 iter 10 value 94.148355 iter 20 value 94.147192 final value 94.147188 converged Fitting Repeat 4 # weights: 305 initial value 96.119101 final value 94.484211 converged Fitting Repeat 5 # weights: 305 initial value 105.271674 final value 94.484211 converged Fitting Repeat 1 # weights: 507 initial value 109.005125 final value 93.109890 converged Fitting Repeat 2 # weights: 507 initial value 109.924584 final value 94.467391 converged Fitting Repeat 3 # weights: 507 initial value 110.518029 final value 94.423530 converged Fitting Repeat 4 # weights: 507 initial value 103.228239 final value 94.484211 converged Fitting Repeat 5 # weights: 507 initial value 96.511505 final value 94.484211 converged Fitting Repeat 1 # weights: 103 initial value 105.517532 iter 10 value 90.225657 iter 20 value 84.079807 iter 30 value 82.683961 iter 40 value 82.254159 iter 50 value 82.141222 iter 60 value 82.022651 iter 70 value 81.531368 iter 80 value 81.131535 iter 90 value 81.055776 final value 81.055751 converged Fitting Repeat 2 # weights: 103 initial value 111.039630 iter 10 value 94.489228 iter 20 value 85.281911 iter 30 value 84.211702 iter 40 value 82.201439 iter 50 value 82.060677 iter 60 value 81.905414 iter 70 value 81.532695 iter 80 value 81.336927 iter 90 value 81.188900 final value 81.188882 converged Fitting Repeat 3 # weights: 103 initial value 106.880105 iter 10 value 94.488594 iter 20 value 94.125720 iter 30 value 91.337625 iter 40 value 91.040663 iter 50 value 90.824084 iter 60 value 82.939584 iter 70 value 81.313739 iter 80 value 80.858012 iter 90 value 80.775165 final value 80.774654 converged Fitting Repeat 4 # weights: 103 initial value 104.740568 iter 10 value 94.455342 iter 20 value 92.563305 iter 30 value 92.450378 iter 40 value 92.003505 iter 50 value 84.271291 iter 60 value 82.326263 iter 70 value 82.123033 iter 80 value 81.585784 iter 90 value 81.173930 iter 100 value 81.055755 final value 81.055755 stopped after 100 iterations Fitting Repeat 5 # weights: 103 initial value 110.731504 iter 10 value 94.330539 iter 20 value 86.122879 iter 30 value 82.786443 iter 40 value 82.479323 iter 50 value 82.240511 iter 60 value 81.789397 iter 70 value 81.268136 iter 80 value 81.210520 final value 81.198068 converged Fitting Repeat 1 # weights: 305 initial value 122.624430 iter 10 value 94.414246 iter 20 value 91.961797 iter 30 value 84.259167 iter 40 value 82.107839 iter 50 value 80.347858 iter 60 value 79.402427 iter 70 value 79.101252 iter 80 value 79.073843 iter 90 value 79.034768 iter 100 value 78.343136 final value 78.343136 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 121.584174 iter 10 value 94.489970 iter 20 value 92.297428 iter 30 value 88.643926 iter 40 value 88.300805 iter 50 value 85.313332 iter 60 value 83.865783 iter 70 value 83.164831 iter 80 value 79.681495 iter 90 value 78.105221 iter 100 value 77.502850 final value 77.502850 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 104.854095 iter 10 value 92.122144 iter 20 value 86.017623 iter 30 value 85.696466 iter 40 value 85.559264 iter 50 value 83.237994 iter 60 value 81.492739 iter 70 value 81.034627 iter 80 value 80.938784 iter 90 value 80.912010 iter 100 value 80.879005 final value 80.879005 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 108.205231 iter 10 value 94.495802 iter 20 value 90.681919 iter 30 value 85.928448 iter 40 value 83.743070 iter 50 value 83.148734 iter 60 value 82.506407 iter 70 value 81.722124 iter 80 value 81.448827 iter 90 value 81.160310 iter 100 value 80.967022 final value 80.967022 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 98.201159 iter 10 value 91.801133 iter 20 value 83.895427 iter 30 value 79.863444 iter 40 value 78.892066 iter 50 value 78.295313 iter 60 value 78.041792 iter 70 value 77.870523 iter 80 value 77.827481 iter 90 value 77.819910 final value 77.819637 converged Fitting Repeat 1 # weights: 507 initial value 126.557060 iter 10 value 94.553465 iter 20 value 84.826465 iter 30 value 83.101036 iter 40 value 81.707374 iter 50 value 80.986289 iter 60 value 80.863437 iter 70 value 80.823109 iter 80 value 80.702164 iter 90 value 80.184280 iter 100 value 79.292614 final value 79.292614 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 112.076183 iter 10 value 94.410758 iter 20 value 86.717262 iter 30 value 82.795451 iter 40 value 78.944948 iter 50 value 78.272168 iter 60 value 78.097094 iter 70 value 77.602234 iter 80 value 77.226907 iter 90 value 77.026884 iter 100 value 76.863194 final value 76.863194 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 143.027060 iter 10 value 94.322313 iter 20 value 88.432270 iter 30 value 86.324789 iter 40 value 81.104297 iter 50 value 79.658691 iter 60 value 79.407958 iter 70 value 79.036767 iter 80 value 78.315277 iter 90 value 77.986277 iter 100 value 77.395852 final value 77.395852 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 106.359212 iter 10 value 89.197638 iter 20 value 84.375040 iter 30 value 82.535223 iter 40 value 81.963647 iter 50 value 78.839204 iter 60 value 77.926054 iter 70 value 77.542171 iter 80 value 77.296999 iter 90 value 77.105211 iter 100 value 77.021556 final value 77.021556 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 109.744568 iter 10 value 97.550028 iter 20 value 94.471737 iter 30 value 86.472714 iter 40 value 84.308402 iter 50 value 82.413114 iter 60 value 82.171086 iter 70 value 82.068939 iter 80 value 81.068219 iter 90 value 79.884304 iter 100 value 79.516581 final value 79.516581 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 95.244212 final value 94.485930 converged Fitting Repeat 2 # weights: 103 initial value 98.976352 final value 94.486037 converged Fitting Repeat 3 # weights: 103 initial value 108.038378 final value 94.485868 converged Fitting Repeat 4 # weights: 103 initial value 99.424046 final value 94.485926 converged Fitting Repeat 5 # weights: 103 initial value 104.129616 final value 94.485836 converged Fitting Repeat 1 # weights: 305 initial value 103.784578 iter 10 value 94.668154 iter 20 value 94.487043 iter 30 value 94.403506 iter 40 value 93.121322 iter 50 value 93.114615 iter 60 value 89.396185 iter 70 value 85.016960 iter 80 value 82.858596 iter 90 value 81.801991 iter 100 value 81.650245 final value 81.650245 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 117.008659 iter 10 value 94.489044 iter 20 value 94.466547 iter 30 value 82.338835 iter 40 value 81.074523 final value 81.058879 converged Fitting Repeat 3 # weights: 305 initial value 92.976760 iter 10 value 91.077165 iter 20 value 91.016779 iter 30 value 89.468354 iter 40 value 80.368706 iter 50 value 80.214275 final value 80.213425 converged Fitting Repeat 4 # weights: 305 initial value 98.552162 iter 10 value 94.489340 iter 20 value 94.465407 iter 30 value 91.019050 iter 40 value 82.876709 iter 50 value 82.674544 iter 60 value 82.673218 iter 70 value 82.672661 iter 80 value 81.471557 iter 90 value 81.449196 final value 81.449107 converged Fitting Repeat 5 # weights: 305 initial value 98.581781 iter 10 value 94.472412 iter 20 value 94.434796 iter 30 value 82.795077 iter 40 value 79.710054 iter 50 value 79.373993 iter 60 value 78.492762 iter 70 value 78.301384 iter 80 value 78.299911 iter 90 value 78.298555 iter 100 value 78.298268 final value 78.298268 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 97.675534 iter 10 value 94.492619 iter 20 value 94.481683 final value 94.467464 converged Fitting Repeat 2 # weights: 507 initial value 105.780146 iter 10 value 94.492713 iter 20 value 94.279296 iter 30 value 82.276830 iter 40 value 80.709447 iter 50 value 80.154889 iter 60 value 80.086672 iter 70 value 79.918240 iter 80 value 79.686167 iter 90 value 79.644501 final value 79.644455 converged Fitting Repeat 3 # weights: 507 initial value 97.858257 iter 10 value 94.492274 iter 20 value 90.646670 iter 30 value 83.439361 iter 40 value 83.404647 iter 50 value 83.400626 iter 60 value 83.400330 iter 70 value 83.230333 iter 80 value 82.095704 iter 90 value 81.779542 iter 100 value 81.768967 final value 81.768967 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 102.382869 iter 10 value 94.492565 iter 20 value 92.626702 iter 30 value 82.104551 iter 40 value 80.911644 iter 50 value 77.116486 iter 60 value 76.474204 iter 70 value 76.431559 iter 80 value 76.400764 iter 90 value 76.201389 iter 100 value 76.166492 final value 76.166492 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 99.538755 iter 10 value 94.436314 iter 20 value 94.435612 iter 30 value 94.428362 iter 40 value 84.311961 iter 50 value 81.999204 iter 60 value 81.949180 iter 70 value 81.879582 iter 80 value 81.719000 iter 90 value 81.663130 iter 100 value 81.550260 final value 81.550260 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 95.593879 final value 94.484211 converged Fitting Repeat 2 # weights: 103 initial value 97.269958 iter 10 value 93.693786 iter 20 value 93.669297 final value 93.663124 converged Fitting Repeat 3 # weights: 103 initial value 101.931130 final value 94.484211 converged Fitting Repeat 4 # weights: 103 initial value 109.611888 final value 94.484211 converged Fitting Repeat 5 # weights: 103 initial value 100.558991 final value 94.484211 converged Fitting Repeat 1 # weights: 305 initial value 95.729208 final value 94.484211 converged Fitting Repeat 2 # weights: 305 initial value 96.454075 final value 94.484211 converged Fitting Repeat 3 # weights: 305 initial value 108.499049 final value 94.484211 converged Fitting Repeat 4 # weights: 305 initial value 100.835854 final value 94.275362 converged Fitting Repeat 5 # weights: 305 initial value 105.918169 iter 10 value 94.381476 final value 94.381462 converged Fitting Repeat 1 # weights: 507 initial value 112.539259 final value 94.275362 converged Fitting Repeat 2 # weights: 507 initial value 103.363581 iter 10 value 94.318030 final value 94.315791 converged Fitting Repeat 3 # weights: 507 initial value 95.834942 iter 10 value 91.545444 iter 20 value 89.793017 iter 30 value 82.280578 iter 40 value 82.042577 final value 82.042213 converged Fitting Repeat 4 # weights: 507 initial value 96.093998 final value 94.214007 converged Fitting Repeat 5 # weights: 507 initial value 96.978309 final value 94.484211 converged Fitting Repeat 1 # weights: 103 initial value 100.558583 iter 10 value 94.510590 iter 20 value 88.375791 iter 30 value 86.514861 iter 40 value 82.892803 iter 50 value 82.153246 iter 60 value 82.083172 iter 70 value 82.024817 iter 80 value 82.016318 iter 80 value 82.016317 iter 80 value 82.016317 final value 82.016317 converged Fitting Repeat 2 # weights: 103 initial value 99.213115 iter 10 value 94.495459 iter 20 value 90.083313 iter 30 value 88.635226 iter 40 value 87.134267 iter 50 value 86.452683 iter 60 value 85.850595 iter 70 value 83.424201 iter 80 value 82.831759 iter 90 value 82.726837 iter 100 value 82.253141 final value 82.253141 stopped after 100 iterations Fitting Repeat 3 # weights: 103 initial value 96.848363 iter 10 value 92.331533 iter 20 value 83.090370 iter 30 value 82.214767 iter 40 value 82.083881 final value 82.083079 converged Fitting Repeat 4 # weights: 103 initial value 104.260775 iter 10 value 94.485100 iter 20 value 93.674687 iter 30 value 89.485921 iter 40 value 85.199181 iter 50 value 84.382147 iter 60 value 81.200216 iter 70 value 80.431771 iter 80 value 80.256749 final value 80.255540 converged Fitting Repeat 5 # weights: 103 initial value 107.599159 iter 10 value 94.508714 iter 20 value 94.487374 iter 30 value 94.240843 iter 40 value 93.781865 iter 50 value 85.756819 iter 60 value 83.218499 iter 70 value 82.819041 iter 80 value 82.589208 iter 90 value 82.512084 final value 82.512071 converged Fitting Repeat 1 # weights: 305 initial value 118.130838 iter 10 value 93.347415 iter 20 value 85.291176 iter 30 value 83.149279 iter 40 value 82.444503 iter 50 value 82.292037 iter 60 value 82.213234 iter 70 value 82.082774 iter 80 value 82.060228 iter 90 value 82.046156 iter 100 value 81.959409 final value 81.959409 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 129.273554 iter 10 value 94.049885 iter 20 value 84.239220 iter 30 value 82.761296 iter 40 value 82.212418 iter 50 value 81.219790 iter 60 value 80.471497 iter 70 value 79.984341 iter 80 value 79.772659 iter 90 value 79.639076 iter 100 value 79.492134 final value 79.492134 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 104.375649 iter 10 value 94.476991 iter 20 value 85.923417 iter 30 value 84.711548 iter 40 value 82.948511 iter 50 value 82.119593 iter 60 value 81.171654 iter 70 value 80.838933 iter 80 value 80.764734 iter 90 value 80.579963 iter 100 value 80.488076 final value 80.488076 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 99.419472 iter 10 value 94.147737 iter 20 value 84.669748 iter 30 value 83.964992 iter 40 value 82.667974 iter 50 value 82.127466 iter 60 value 81.964275 iter 70 value 81.533280 iter 80 value 80.325427 iter 90 value 79.771057 iter 100 value 79.737685 final value 79.737685 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 116.637382 iter 10 value 94.433628 iter 20 value 93.277312 iter 30 value 85.510161 iter 40 value 83.413823 iter 50 value 82.525889 iter 60 value 81.426844 iter 70 value 80.649446 iter 80 value 79.926563 iter 90 value 79.645891 iter 100 value 79.606551 final value 79.606551 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 107.728360 iter 10 value 94.721709 iter 20 value 93.074593 iter 30 value 86.520247 iter 40 value 81.512997 iter 50 value 80.806631 iter 60 value 80.322960 iter 70 value 79.238810 iter 80 value 79.035958 iter 90 value 78.812080 iter 100 value 78.739043 final value 78.739043 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 117.548442 iter 10 value 94.473917 iter 20 value 85.237210 iter 30 value 84.942931 iter 40 value 84.293649 iter 50 value 81.111646 iter 60 value 80.216071 iter 70 value 80.013785 iter 80 value 79.524989 iter 90 value 79.435993 iter 100 value 79.323097 final value 79.323097 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 112.451780 iter 10 value 93.040691 iter 20 value 91.194124 iter 30 value 89.903077 iter 40 value 85.657548 iter 50 value 82.114187 iter 60 value 80.723272 iter 70 value 80.469668 iter 80 value 80.360120 iter 90 value 80.063485 iter 100 value 79.957396 final value 79.957396 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 146.929924 iter 10 value 100.395046 iter 20 value 92.362548 iter 30 value 89.917846 iter 40 value 84.942390 iter 50 value 84.101705 iter 60 value 82.248007 iter 70 value 80.246989 iter 80 value 79.705779 iter 90 value 79.398820 iter 100 value 79.168465 final value 79.168465 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 114.391443 iter 10 value 95.178372 iter 20 value 94.489858 iter 30 value 84.837061 iter 40 value 83.388749 iter 50 value 82.469968 iter 60 value 80.825007 iter 70 value 80.348850 iter 80 value 80.095939 iter 90 value 79.871725 iter 100 value 79.682137 final value 79.682137 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 96.267327 iter 10 value 94.485738 iter 20 value 94.463027 iter 30 value 85.515906 iter 40 value 85.193676 iter 50 value 85.024662 iter 60 value 84.379733 iter 70 value 84.366220 iter 80 value 84.353596 iter 90 value 84.264973 iter 100 value 84.261735 final value 84.261735 stopped after 100 iterations Fitting Repeat 2 # weights: 103 initial value 102.480111 final value 94.485937 converged Fitting Repeat 3 # weights: 103 initial value 97.617510 iter 10 value 94.277021 iter 20 value 94.275618 iter 30 value 94.206616 iter 40 value 84.876372 iter 50 value 84.870976 iter 60 value 84.793476 iter 70 value 84.769816 final value 84.769565 converged Fitting Repeat 4 # weights: 103 initial value 100.363665 iter 10 value 94.486054 iter 20 value 94.481315 iter 30 value 92.101756 iter 40 value 89.003446 iter 50 value 88.839040 iter 60 value 88.830585 iter 70 value 88.788331 iter 80 value 88.753243 iter 90 value 88.334203 iter 100 value 88.211458 final value 88.211458 stopped after 100 iterations Fitting Repeat 5 # weights: 103 initial value 109.208137 final value 94.485691 converged Fitting Repeat 1 # weights: 305 initial value 99.052674 iter 10 value 94.280483 iter 20 value 94.275556 iter 30 value 93.804102 iter 40 value 87.687845 iter 50 value 86.784792 iter 60 value 83.695408 iter 70 value 81.963232 iter 80 value 81.917968 iter 90 value 81.910437 iter 100 value 81.903231 final value 81.903231 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 116.132155 iter 10 value 94.488624 iter 20 value 91.086511 iter 30 value 91.010428 iter 40 value 90.994457 iter 50 value 90.458901 iter 60 value 90.215323 final value 90.214852 converged Fitting Repeat 3 # weights: 305 initial value 94.637433 iter 10 value 94.486645 iter 20 value 94.051402 iter 20 value 94.051402 final value 94.051402 converged Fitting Repeat 4 # weights: 305 initial value 107.791195 iter 10 value 94.280499 iter 20 value 94.276851 iter 30 value 83.805508 iter 40 value 81.541812 iter 50 value 80.785849 iter 60 value 80.785209 iter 70 value 80.717054 iter 80 value 80.701695 final value 80.701683 converged Fitting Repeat 5 # weights: 305 initial value 117.091180 iter 10 value 94.280256 iter 20 value 94.125498 iter 30 value 84.871112 iter 40 value 84.870449 iter 50 value 84.771968 iter 60 value 83.541698 final value 83.541399 converged Fitting Repeat 1 # weights: 507 initial value 108.853128 iter 10 value 93.993062 iter 20 value 93.939733 iter 30 value 93.933094 iter 40 value 93.725683 iter 50 value 93.628182 iter 60 value 85.220107 iter 70 value 80.812187 iter 80 value 80.701127 iter 90 value 80.700888 iter 100 value 80.700758 final value 80.700758 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 98.609384 iter 10 value 94.321245 iter 20 value 94.281640 iter 30 value 94.269305 iter 40 value 82.400266 iter 50 value 81.903455 iter 60 value 81.823372 iter 70 value 81.819007 final value 81.818984 converged Fitting Repeat 3 # weights: 507 initial value 120.076633 iter 10 value 94.492360 iter 20 value 94.399965 iter 30 value 92.305972 final value 92.305852 converged Fitting Repeat 4 # weights: 507 initial value 97.583707 iter 10 value 94.314103 iter 20 value 94.237700 iter 30 value 94.204597 iter 40 value 84.255207 iter 50 value 84.106877 iter 60 value 84.101703 final value 84.101686 converged Fitting Repeat 5 # weights: 507 initial value 95.205259 iter 10 value 94.283517 iter 20 value 94.276220 final value 94.275966 converged Fitting Repeat 1 # weights: 103 initial value 97.062683 final value 94.484211 converged Fitting Repeat 2 # weights: 103 initial value 103.567068 final value 94.484211 converged Fitting Repeat 3 # weights: 103 initial value 97.261445 final value 94.484211 converged Fitting Repeat 4 # weights: 103 initial value 98.267446 final value 94.484211 converged Fitting Repeat 5 # weights: 103 initial value 96.995399 final value 94.484211 converged Fitting Repeat 1 # weights: 305 initial value 102.145066 final value 94.484211 converged Fitting Repeat 2 # weights: 305 initial value 98.978110 iter 10 value 86.518625 iter 20 value 86.440814 final value 86.440679 converged Fitting Repeat 3 # weights: 305 initial value 120.575206 final value 94.484211 converged Fitting Repeat 4 # weights: 305 initial value 96.383757 final value 93.976244 converged Fitting Repeat 5 # weights: 305 initial value 100.661831 final value 94.484211 converged Fitting Repeat 1 # weights: 507 initial value 118.926609 final value 94.026542 converged Fitting Repeat 2 # weights: 507 initial value 110.632362 iter 10 value 93.012417 iter 20 value 88.748698 iter 30 value 87.088161 iter 40 value 85.439931 iter 50 value 85.132198 iter 60 value 85.128815 iter 70 value 84.928321 iter 80 value 84.541180 final value 84.541148 converged Fitting Repeat 3 # weights: 507 initial value 99.164357 iter 10 value 88.816006 iter 20 value 88.754271 iter 30 value 88.674124 iter 40 value 88.672432 final value 88.672429 converged Fitting Repeat 4 # weights: 507 initial value 98.106681 final value 94.443243 converged Fitting Repeat 5 # weights: 507 initial value 108.169065 final value 94.484212 converged Fitting Repeat 1 # weights: 103 initial value 100.980190 iter 10 value 94.488485 iter 20 value 91.513235 iter 30 value 87.518826 iter 40 value 86.938945 iter 50 value 86.479569 iter 60 value 86.131545 iter 70 value 85.173096 iter 80 value 84.189676 iter 90 value 83.689616 iter 100 value 83.136252 final value 83.136252 stopped after 100 iterations Fitting Repeat 2 # weights: 103 initial value 99.752643 iter 10 value 94.431919 iter 20 value 92.626014 iter 30 value 92.353402 iter 40 value 92.256725 final value 92.256679 converged Fitting Repeat 3 # weights: 103 initial value 100.818974 iter 10 value 94.477232 iter 20 value 94.187864 iter 30 value 94.015046 iter 40 value 92.522190 iter 50 value 87.026023 iter 60 value 85.594994 iter 70 value 85.213447 iter 80 value 84.641558 iter 90 value 84.098054 iter 100 value 83.633456 final value 83.633456 stopped after 100 iterations Fitting Repeat 4 # weights: 103 initial value 97.934816 iter 10 value 94.486518 iter 20 value 94.259978 iter 30 value 94.021135 iter 40 value 93.282657 iter 50 value 88.209282 iter 60 value 87.748643 iter 70 value 86.549080 iter 80 value 85.727505 iter 90 value 85.699955 final value 85.699952 converged Fitting Repeat 5 # weights: 103 initial value 100.399380 iter 10 value 92.496043 iter 20 value 86.285346 iter 30 value 86.095817 iter 40 value 85.454976 iter 50 value 85.233830 iter 60 value 85.116779 iter 70 value 85.041687 final value 85.040381 converged Fitting Repeat 1 # weights: 305 initial value 105.801325 iter 10 value 94.750517 iter 20 value 93.051836 iter 30 value 92.672088 iter 40 value 92.247860 iter 50 value 85.966434 iter 60 value 82.969519 iter 70 value 82.022560 iter 80 value 81.743148 iter 90 value 81.702023 iter 100 value 81.643905 final value 81.643905 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 123.323413 iter 10 value 94.488083 iter 20 value 93.967580 iter 30 value 91.588948 iter 40 value 89.665133 iter 50 value 89.515756 iter 60 value 86.446637 iter 70 value 84.441315 iter 80 value 82.558922 iter 90 value 82.168210 iter 100 value 81.764692 final value 81.764692 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 108.002910 iter 10 value 94.554672 iter 20 value 94.383895 iter 30 value 93.883652 iter 40 value 90.062932 iter 50 value 87.057688 iter 60 value 86.452406 iter 70 value 86.176743 iter 80 value 85.918433 iter 90 value 85.313927 iter 100 value 82.929076 final value 82.929076 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 104.356400 iter 10 value 94.542968 iter 20 value 93.341802 iter 30 value 93.038068 iter 40 value 90.684892 iter 50 value 88.226259 iter 60 value 84.923308 iter 70 value 82.783455 iter 80 value 82.251744 iter 90 value 81.969928 iter 100 value 81.854898 final value 81.854898 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 113.878594 iter 10 value 94.545027 iter 20 value 90.419150 iter 30 value 88.796059 iter 40 value 86.371360 iter 50 value 85.953871 iter 60 value 84.391311 iter 70 value 82.955363 iter 80 value 82.359576 iter 90 value 82.192975 iter 100 value 82.132220 final value 82.132220 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 104.014392 iter 10 value 93.421266 iter 20 value 88.875101 iter 30 value 87.620182 iter 40 value 86.116152 iter 50 value 83.585386 iter 60 value 83.303690 iter 70 value 82.432674 iter 80 value 81.642500 iter 90 value 81.587247 iter 100 value 81.419355 final value 81.419355 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 119.113355 iter 10 value 92.934241 iter 20 value 87.754341 iter 30 value 84.916347 iter 40 value 83.379438 iter 50 value 81.978346 iter 60 value 81.642367 iter 70 value 81.446880 iter 80 value 81.335850 iter 90 value 81.324870 iter 100 value 81.321658 final value 81.321658 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 122.444503 iter 10 value 94.582860 iter 20 value 94.424459 iter 30 value 93.914341 iter 40 value 90.207580 iter 50 value 86.518543 iter 60 value 86.184592 iter 70 value 85.736084 iter 80 value 85.305155 iter 90 value 85.074141 iter 100 value 84.197818 final value 84.197818 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 102.970472 iter 10 value 94.303294 iter 20 value 87.737055 iter 30 value 87.416953 iter 40 value 86.453346 iter 50 value 82.204107 iter 60 value 81.745513 iter 70 value 81.570970 iter 80 value 81.331996 iter 90 value 81.235850 iter 100 value 81.215559 final value 81.215559 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 131.943796 iter 10 value 98.351014 iter 20 value 96.320277 iter 30 value 96.191077 iter 40 value 93.698149 iter 50 value 90.499256 iter 60 value 85.035391 iter 70 value 84.070150 iter 80 value 83.779140 iter 90 value 82.746448 iter 100 value 82.047075 final value 82.047075 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 105.491679 iter 10 value 94.485520 final value 94.484318 converged Fitting Repeat 2 # weights: 103 initial value 101.317955 iter 10 value 94.486119 iter 20 value 94.483682 final value 94.027230 converged Fitting Repeat 3 # weights: 103 initial value 106.149367 final value 94.485689 converged Fitting Repeat 4 # weights: 103 initial value 96.383216 final value 94.485699 converged Fitting Repeat 5 # weights: 103 initial value 99.668250 final value 94.485720 converged Fitting Repeat 1 # weights: 305 initial value 98.120840 iter 10 value 93.374334 iter 20 value 93.330507 final value 93.330090 converged Fitting Repeat 2 # weights: 305 initial value 108.694133 iter 10 value 94.489768 iter 20 value 94.484623 iter 30 value 94.460514 iter 40 value 93.852936 iter 50 value 93.851969 final value 93.851959 converged Fitting Repeat 3 # weights: 305 initial value 104.901548 iter 10 value 94.310916 iter 20 value 94.193565 final value 94.026802 converged Fitting Repeat 4 # weights: 305 initial value 100.912232 iter 10 value 94.484941 iter 20 value 94.484398 iter 20 value 94.484397 iter 20 value 94.484397 final value 94.484397 converged Fitting Repeat 5 # weights: 305 initial value 103.469042 iter 10 value 94.488602 iter 20 value 94.484254 final value 94.484212 converged Fitting Repeat 1 # weights: 507 initial value 105.866251 iter 10 value 94.034954 iter 20 value 93.995088 iter 30 value 93.763155 iter 40 value 93.763034 iter 50 value 93.758781 iter 60 value 93.505380 iter 70 value 92.112561 iter 80 value 90.872317 iter 90 value 84.792145 iter 100 value 83.854579 final value 83.854579 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 106.957817 iter 10 value 94.491474 iter 20 value 93.721858 iter 30 value 88.244006 iter 40 value 88.243345 iter 50 value 88.129295 iter 60 value 88.128883 iter 70 value 87.835029 iter 80 value 87.242368 iter 90 value 87.149332 final value 87.147690 converged Fitting Repeat 3 # weights: 507 initial value 111.595093 iter 10 value 94.060797 iter 20 value 93.889124 iter 30 value 93.873195 final value 93.851709 converged Fitting Repeat 4 # weights: 507 initial value 100.731330 iter 10 value 94.320463 iter 20 value 94.311241 iter 30 value 93.859424 final value 93.822517 converged Fitting Repeat 5 # weights: 507 initial value 103.601377 iter 10 value 88.585853 iter 20 value 86.227690 iter 30 value 83.928737 iter 40 value 83.586524 iter 50 value 83.460537 iter 60 value 83.202445 iter 70 value 83.158955 iter 80 value 83.121915 iter 90 value 83.116776 iter 90 value 83.116775 final value 83.116775 converged Fitting Repeat 1 # weights: 305 initial value 133.996068 iter 10 value 117.921426 iter 20 value 108.371252 iter 30 value 105.424588 iter 40 value 102.919766 iter 50 value 101.787010 iter 60 value 101.369690 iter 70 value 101.199135 iter 80 value 101.091214 iter 90 value 101.076402 iter 100 value 100.952559 final value 100.952559 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 123.795330 iter 10 value 118.065401 iter 20 value 105.293078 iter 30 value 103.152953 iter 40 value 102.614862 iter 50 value 101.853357 iter 60 value 101.229391 iter 70 value 100.986616 iter 80 value 100.944425 iter 90 value 100.499515 iter 100 value 100.333842 final value 100.333842 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 127.091161 iter 10 value 118.378413 iter 20 value 117.424540 iter 30 value 113.083976 iter 40 value 112.228460 iter 50 value 109.391440 iter 60 value 106.761120 iter 70 value 105.802912 iter 80 value 102.961480 iter 90 value 101.339054 iter 100 value 101.102537 final value 101.102537 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 143.727698 iter 10 value 117.869384 iter 20 value 113.972565 iter 30 value 107.105610 iter 40 value 105.360428 iter 50 value 104.416021 iter 60 value 102.170959 iter 70 value 101.254562 iter 80 value 100.915039 iter 90 value 100.866553 iter 100 value 100.810479 final value 100.810479 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 158.760649 iter 10 value 117.916160 iter 20 value 115.914819 iter 30 value 108.921288 iter 40 value 106.362667 iter 50 value 105.115617 iter 60 value 104.358112 iter 70 value 102.170302 iter 80 value 101.221585 iter 90 value 100.938269 iter 100 value 100.696558 final value 100.696558 stopped after 100 iterations svmRadial ranger Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases RUNIT TEST PROTOCOL -- Thu Jul 11 22:40:36 2024 *********************************************** Number of test functions: 7 Number of errors: 0 Number of failures: 0 1 Test Suite : HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures Number of test functions: 7 Number of errors: 0 Number of failures: 0 Warning messages: 1: `repeats` has no meaning for this resampling method. 2: executing %dopar% sequentially: no parallel backend registered > > > > > proc.time() user system elapsed 45.287 1.168 50.637
HPiP.Rcheck/HPiP-Ex.timings
name | user | system | elapsed | |
FSmethod | 52.177 | 1.886 | 54.172 | |
FreqInteractors | 0.265 | 0.021 | 0.286 | |
calculateAAC | 0.045 | 0.007 | 0.052 | |
calculateAutocor | 0.408 | 0.036 | 0.443 | |
calculateCTDC | 0.085 | 0.004 | 0.088 | |
calculateCTDD | 0.568 | 0.013 | 0.580 | |
calculateCTDT | 0.244 | 0.006 | 0.250 | |
calculateCTriad | 0.446 | 0.015 | 0.461 | |
calculateDC | 0.098 | 0.009 | 0.107 | |
calculateF | 0.318 | 0.008 | 0.327 | |
calculateKSAAP | 0.096 | 0.007 | 0.103 | |
calculateQD_Sm | 1.951 | 0.094 | 2.045 | |
calculateTC | 1.686 | 0.170 | 1.856 | |
calculateTC_Sm | 0.319 | 0.018 | 0.337 | |
corr_plot | 52.664 | 1.950 | 54.685 | |
enrichfindP | 0.501 | 0.076 | 9.592 | |
enrichfind_hp | 0.072 | 0.015 | 1.043 | |
enrichplot | 0.382 | 0.010 | 0.392 | |
filter_missing_values | 0.001 | 0.000 | 0.001 | |
getFASTA | 0.089 | 0.014 | 0.924 | |
getHPI | 0.001 | 0.000 | 0.001 | |
get_negativePPI | 0.002 | 0.000 | 0.001 | |
get_positivePPI | 0 | 0 | 0 | |
impute_missing_data | 0.001 | 0.001 | 0.002 | |
plotPPI | 0.077 | 0.003 | 0.079 | |
pred_ensembel | 16.154 | 0.353 | 13.716 | |
var_imp | 54.267 | 1.969 | 56.272 | |