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This page was generated on 2024-03-28 11:37:33 -0400 (Thu, 28 Mar 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_64R Under development (unstable) (2024-03-18 r86148) -- "Unsuffered Consequences" 4708
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2024-03-16 r86144 ucrt) -- "Unsuffered Consequences" 4446
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2024-03-18 r86148) -- "Unsuffered Consequences" 4471
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch64R Under development (unstable) (2024-03-19 r86153) -- "Unsuffered Consequences" 4426
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 476/2270HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CTexploreR 0.99.5  (landing page)
Axelle Loriot
Snapshot Date: 2024-03-27 14:00:18 -0400 (Wed, 27 Mar 2024)
git_url: https://git.bioconductor.org/packages/CTexploreR
git_branch: devel
git_last_commit: ee97824
git_last_commit_date: 2023-11-10 10:17:01 -0400 (Fri, 10 Nov 2023)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    ERROR  skipped
palomino3Windows Server 2022 Datacenter / x64  ERROR    OK    ERROR    OK  
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    ERROR  skipped

CHECK results for CTexploreR on palomino3


To the developers/maintainers of the CTexploreR package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CTexploreR.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: CTexploreR
Version: 0.99.5
Command: F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:CTexploreR.install-out.txt --library=F:\biocbuild\bbs-3.19-bioc\R\library --no-vignettes --timings CTexploreR_0.99.5.tar.gz
StartedAt: 2024-03-28 00:59:00 -0400 (Thu, 28 Mar 2024)
EndedAt: 2024-03-28 00:59:05 -0400 (Thu, 28 Mar 2024)
EllapsedTime: 4.9 seconds
RetCode: 1
Status:   ERROR  
CheckDir: CTexploreR.Rcheck
Warnings: NA

Command output

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###
### Running command:
###
###   F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:CTexploreR.install-out.txt --library=F:\biocbuild\bbs-3.19-bioc\R\library --no-vignettes --timings CTexploreR_0.99.5.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'F:/biocbuild/bbs-3.19-bioc/meat/CTexploreR.Rcheck'
* using R Under development (unstable) (2024-03-16 r86144 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'CTexploreR/DESCRIPTION' ... OK
* this is package 'CTexploreR' version '0.99.5'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'CTexploreR' can be installed ... ERROR
Installation failed.
See 'F:/biocbuild/bbs-3.19-bioc/meat/CTexploreR.Rcheck/00install.out' for details.
* DONE

Status: 1 ERROR
See
  'F:/biocbuild/bbs-3.19-bioc/meat/CTexploreR.Rcheck/00check.log'
for details.


Installation output

CTexploreR.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD INSTALL CTexploreR
###
##############################################################################
##############################################################################


* installing to library 'F:/biocbuild/bbs-3.19-bioc/R/library'
* installing *source* package 'CTexploreR' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
see ?CTdata and browseVignettes('CTdata') for documentation
loading from cache
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
Error: package or namespace load failed for 'CTdata':
 .onLoad failed in loadNamespace() for 'CTdata', details:
  call: h(simpleError(msg, call))
  error: error in evaluating the argument 'x' in selecting a method for function 'query': failed to connect
  reason: Scanner error: mapping values are not allowed in this context at line 3, column 13
  Consider rerunning with 'localHub=TRUE'
Error : package 'CTdata' could not be loaded
Error: loading failed
Execution halted
ERROR: loading failed
* removing 'F:/biocbuild/bbs-3.19-bioc/R/library/CTexploreR'
* restoring previous 'F:/biocbuild/bbs-3.19-bioc/R/library/CTexploreR'

Tests output


Example timings