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This page was generated on 2024-04-16 14:51:29 -0400 (Tue, 16 Apr 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.3.3 (2024-02-29) -- "Angel Food Cake" 4676
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 279/429HostnameOS / ArchINSTALLBUILDCHECK
optimalFlowData 1.14.0  (landing page)
Hristo Inouzhe
Snapshot Date: 2024-04-16 07:30:02 -0400 (Tue, 16 Apr 2024)
git_url: https://git.bioconductor.org/packages/optimalFlowData
git_branch: RELEASE_3_18
git_last_commit: 11b8946
git_last_commit_date: 2023-10-24 09:20:58 -0400 (Tue, 24 Oct 2023)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published

CHECK results for optimalFlowData on nebbiolo2


To the developers/maintainers of the optimalFlowData package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: optimalFlowData
Version: 1.14.0
Command: /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD check --install=check:optimalFlowData.install-out.txt --library=/home/biocbuild/bbs-3.18-bioc/R/site-library --timings optimalFlowData_1.14.0.tar.gz
StartedAt: 2024-04-16 12:04:05 -0400 (Tue, 16 Apr 2024)
EndedAt: 2024-04-16 12:05:16 -0400 (Tue, 16 Apr 2024)
EllapsedTime: 71.3 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: optimalFlowData.Rcheck
Warnings: 1

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD check --install=check:optimalFlowData.install-out.txt --library=/home/biocbuild/bbs-3.18-bioc/R/site-library --timings optimalFlowData_1.14.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.18-data-experiment/meat/optimalFlowData.Rcheck’
* using R version 4.3.3 (2024-02-29)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
    GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.4 LTS
* using session charset: UTF-8
* checking for file ‘optimalFlowData/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘optimalFlowData’ version ‘1.14.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘optimalFlowData’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 101.0Mb
  sub-directories of 1Mb or more:
    data  100.8Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... WARNING
  LazyData DB of 100.8 MB without LazyDataCompression set
  See §1.1.6 of 'Writing R Extensions'
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘optimalFlowData_vignette.Rmd’ using ‘UTF-8’... OK
 OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 1 NOTE
See
  ‘/home/biocbuild/bbs-3.18-data-experiment/meat/optimalFlowData.Rcheck/00check.log’
for details.



Installation output

optimalFlowData.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD INSTALL optimalFlowData
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.18-bioc/R/site-library’
* installing *source* package ‘optimalFlowData’ ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (optimalFlowData)

Tests output


Example timings

optimalFlowData.Rcheck/optimalFlowData-Ex.timings

nameusersystemelapsed
Cytometry10.0470.0000.047
Cytometry100.0270.0110.040
Cytometry110.0320.0080.040
Cytometry120.0280.0120.040
Cytometry130.0350.0120.047
Cytometry140.0440.0160.059
Cytometry150.0210.0000.021
Cytometry160.0130.0090.021
Cytometry170.0820.0110.094
Cytometry180.0630.0160.079
Cytometry190.0290.0090.038
Cytometry20.0730.0000.074
Cytometry200.0560.0070.064
Cytometry210.0770.0050.081
Cytometry220.0320.0030.036
Cytometry230.0320.0000.033
Cytometry240.0310.0040.035
Cytometry250.0330.0000.032
Cytometry260.0340.0010.034
Cytometry270.0900.0110.101
Cytometry280.0980.0090.106
Cytometry290.0910.0160.107
Cytometry30.020.000.02
Cytometry300.0740.0150.090
Cytometry310.0760.0010.075
Cytometry320.0840.0000.084
Cytometry330.0450.0000.045
Cytometry340.1230.0080.130
Cytometry350.0670.0000.067
Cytometry360.0160.0030.019
Cytometry370.0140.0040.017
Cytometry380.0170.0000.017
Cytometry390.0140.0040.017
Cytometry40.0190.0000.019
Cytometry400.0450.0000.045
Cytometry50.0200.0010.020
Cytometry60.0180.0000.018
Cytometry70.0180.0000.018
Cytometry80.020.000.02
Cytometry90.0290.0040.033
buildDatabase0.6450.0230.669
cytometry.diagnosis0.0010.0000.002
noise.types0.0010.0000.002