Back to Build/check report for BioC 3.18 experimental data
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This page was generated on 2023-12-07 14:52:03 -0500 (Thu, 07 Dec 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.2 LTS)x86_644.3.2 Patched (2023-11-13 r85521) -- "Eye Holes" 4688
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 145/429HostnameOS / ArchINSTALLBUILDCHECK
geneLenDataBase 1.38.0  (landing page)
Matthew Young , Nadia Davidson
Snapshot Date: 2023-12-07 07:30:02 -0500 (Thu, 07 Dec 2023)
git_url: https://git.bioconductor.org/packages/geneLenDataBase
git_branch: RELEASE_3_18
git_last_commit: cbe2fbd
git_last_commit_date: 2023-10-24 08:56:17 -0500 (Tue, 24 Oct 2023)
nebbiolo2Linux (Ubuntu 22.04.2 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published

CHECK results for geneLenDataBase on nebbiolo2


To the developers/maintainers of the geneLenDataBase package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: geneLenDataBase
Version: 1.38.0
Command: /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD check --install=check:geneLenDataBase.install-out.txt --library=/home/biocbuild/bbs-3.18-bioc/R/site-library --timings geneLenDataBase_1.38.0.tar.gz
StartedAt: 2023-12-07 11:28:06 -0500 (Thu, 07 Dec 2023)
EndedAt: 2023-12-07 11:37:07 -0500 (Thu, 07 Dec 2023)
EllapsedTime: 540.4 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: geneLenDataBase.Rcheck
Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD check --install=check:geneLenDataBase.install-out.txt --library=/home/biocbuild/bbs-3.18-bioc/R/site-library --timings geneLenDataBase_1.38.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.18-data-experiment/meat/geneLenDataBase.Rcheck’
* using R version 4.3.2 Patched (2023-11-13 r85521)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
    GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.3 LTS
* using session charset: UTF-8
* checking for file ‘geneLenDataBase/DESCRIPTION’ ... OK
* this is package ‘geneLenDataBase’ version ‘1.38.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘geneLenDataBase’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 100.4Mb
  sub-directories of 1Mb or more:
    data  99.8Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
':::' call which should be '::': ‘GenomicFeatures:::supportedUCSCtables’
  See the note in ?`:::` about the use of this operator.
Unexported object imported by a ':::' call: ‘GenomicFeatures:::.UCSC_TXNAME2GENEID_MAPDEFS’
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... WARNING
Missing link or links in documentation object 'anoCar1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoCar1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoCar1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'aplCal1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'braFlo1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeJap1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caePb1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caePb2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeRem2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeRem3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cb1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cb3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.vegaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.vegaPseudoGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.nscanPasaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droEre1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droEre1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droGri1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droGri1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droPer1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droPer1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSec1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSec1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'gasAcu1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'gasAcu1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.acescan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.vegaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.vegaPseudoGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.acescan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.knownGeneOld3.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.sibGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'loxAfr3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.sibGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'petMar1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'priPac1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'sacCer1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'sacCer2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

See section 'Cross-references' in the 'Writing R Extensions' manual.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.18-data-experiment/meat/geneLenDataBase.Rcheck/00check.log’
for details.



Installation output

geneLenDataBase.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD INSTALL geneLenDataBase
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.18-bioc/R/site-library’
* installing *source* package ‘geneLenDataBase’ ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (geneLenDataBase)

Tests output


Example timings

geneLenDataBase.Rcheck/geneLenDataBase-Ex.timings

nameusersystemelapsed
anoCar1.ensGene.LENGTH0.0810.0000.081
anoCar1.genscan.LENGTH0.050.000.05
anoCar1.xenoRefGene.LENGTH0.8050.0030.808
anoGam1.ensGene.LENGTH0.0630.0000.063
anoGam1.geneid.LENGTH0.0460.0000.046
anoGam1.genscan.LENGTH0.0440.0000.044
apiMel1.genscan.LENGTH0.0380.0000.038
apiMel2.ensGene.LENGTH0.0960.0000.096
apiMel2.geneid.LENGTH0.1160.0040.119
apiMel2.genscan.LENGTH0.0320.0000.032
aplCal1.xenoRefGene.LENGTH0.4400.0080.448
bosTau2.geneSymbol.LENGTH0.0420.0000.042
bosTau2.geneid.LENGTH0.2500.0040.255
bosTau2.genscan.LENGTH0.0920.0000.092
bosTau2.refGene.LENGTH0.0440.0000.044
bosTau2.sgpGene.LENGTH0.1600.0120.171
bosTau3.ensGene.LENGTH0.1040.0000.103
bosTau3.geneSymbol.LENGTH0.0360.0000.035
bosTau3.geneid.LENGTH0.1130.0000.113
bosTau3.genscan.LENGTH0.0680.0040.072
bosTau3.refGene.LENGTH0.0340.0000.034
bosTau3.sgpGene.LENGTH0.0890.0080.097
bosTau4.ensGene.LENGTH0.1010.0000.100
bosTau4.geneSymbol.LENGTH0.0330.0000.034
bosTau4.genscan.LENGTH0.0690.0000.069
bosTau4.nscanGene.LENGTH0.0270.0040.030
bosTau4.refGene.LENGTH0.0330.0000.032
braFlo1.xenoRefGene.LENGTH0.3850.0080.393
caeJap1.xenoRefGene.LENGTH0.3360.0040.339
caePb1.xenoRefGene.LENGTH0.4450.0000.445
caePb2.xenoRefGene.LENGTH0.4540.0000.454
caeRem2.xenoRefGene.LENGTH0.3840.0000.384
caeRem3.xenoRefGene.LENGTH0.3440.0080.351
calJac1.genscan.LENGTH0.090.000.09
calJac1.nscanGene.LENGTH0.1070.0000.108
calJac1.xenoRefGene.LENGTH0.7790.0000.779
canFam1.ensGene.LENGTH0.1050.0000.106
canFam1.geneSymbol.LENGTH0.0050.0000.005
canFam1.genscan.LENGTH0.0670.0000.067
canFam1.nscanGene.LENGTH0.0670.0000.067
canFam1.refGene.LENGTH0.0050.0000.005
canFam1.xenoRefGene.LENGTH0.5610.0040.564
canFam2.ensGene.LENGTH0.2150.0070.223
canFam2.geneSymbol.LENGTH0.0050.0000.005
canFam2.genscan.LENGTH0.0580.0040.061
canFam2.nscanGene.LENGTH0.0670.0000.066
canFam2.refGene.LENGTH0.0060.0000.005
canFam2.xenoRefGene.LENGTH0.5830.0030.588
cavPor3.ensGene.LENGTH0.2430.0040.247
cavPor3.genscan.LENGTH0.0980.0000.097
cavPor3.nscanGene.LENGTH0.0690.0000.069
cavPor3.xenoRefGene.LENGTH0.6360.0000.636
cb1.xenoRefGene.LENGTH0.4340.0000.434
cb3.xenoRefGene.LENGTH0.3450.0040.348
ce2.geneSymbol.LENGTH0.0670.0040.071
ce2.geneid.LENGTH0.0530.0080.061
ce2.refGene.LENGTH0.0670.0000.067
ce4.geneSymbol.LENGTH0.070.000.07
ce4.refGene.LENGTH0.0640.0000.065
ce4.xenoRefGene.LENGTH0.0810.0000.082
ce6.ensGene.LENGTH0.0930.0000.093
ce6.geneSymbol.LENGTH0.0650.0040.068
ce6.refGene.LENGTH0.0640.0000.064
ce6.xenoRefGene.LENGTH0.0910.0000.090
ci1.geneSymbol.LENGTH0.0050.0000.006
ci1.refGene.LENGTH0.0040.0000.005
ci1.xenoRefGene.LENGTH0.1600.0040.164
ci2.ensGene.LENGTH0.0680.0000.068
ci2.geneSymbol.LENGTH0.0050.0000.005
ci2.refGene.LENGTH0.0050.0000.004
ci2.xenoRefGene.LENGTH0.2670.0040.270
danRer3.ensGene.LENGTH0.1020.0000.101
danRer3.geneSymbol.LENGTH0.0550.0000.055
danRer3.refGene.LENGTH0.0500.0010.051
danRer4.ensGene.LENGTH0.1120.0030.114
danRer4.geneSymbol.LENGTH0.0540.0000.053
danRer4.genscan.LENGTH0.1770.0040.180
danRer4.nscanGene.LENGTH0.0910.0000.090
danRer4.refGene.LENGTH0.050.000.05
danRer5.ensGene.LENGTH0.1090.0040.113
danRer5.geneSymbol.LENGTH0.0500.0000.049
danRer5.refGene.LENGTH0.0440.0000.044
danRer5.vegaGene.LENGTH0.0480.0000.048
danRer5.vegaPseudoGene.LENGTH0.0020.0000.002
danRer6.ensGene.LENGTH0.1070.0000.107
danRer6.geneSymbol.LENGTH0.050.000.05
danRer6.refGene.LENGTH0.0480.0000.048
danRer6.xenoRefGene.LENGTH0.4930.0030.497
dm1.geneSymbol.LENGTH0.0650.0000.065
dm1.genscan.LENGTH0.0260.0000.025
dm1.refGene.LENGTH0.0590.0000.060
dm2.geneSymbol.LENGTH0.0650.0000.065
dm2.geneid.LENGTH0.0380.0000.037
dm2.genscan.LENGTH0.0240.0000.025
dm2.nscanGene.LENGTH0.0490.0000.050
dm2.refGene.LENGTH0.0580.0000.058
dm3.geneSymbol.LENGTH0.070.000.07
dm3.nscanPasaGene.LENGTH0.0480.0040.052
dm3.refGene.LENGTH0.0650.0000.065
dp2.genscan.LENGTH0.0330.0000.032
dp2.xenoRefGene.LENGTH0.1920.0000.192
dp3.geneid.LENGTH0.0410.0000.040
dp3.genscan.LENGTH0.0270.0000.027
dp3.xenoRefGene.LENGTH0.1070.0000.107
droAna1.geneid.LENGTH0.2630.0080.271
droAna1.genscan.LENGTH0.0220.0000.022
droAna1.xenoRefGene.LENGTH0.1820.0000.182
droAna2.genscan.LENGTH0.0460.0000.046
droAna2.xenoRefGene.LENGTH0.2330.0080.240
droEre1.genscan.LENGTH0.0290.0000.030
droEre1.xenoRefGene.LENGTH0.2450.0000.246
droGri1.genscan.LENGTH0.0350.0040.039
droGri1.xenoRefGene.LENGTH0.2720.0000.273
droMoj1.geneid.LENGTH0.1210.0000.122
droMoj1.genscan.LENGTH0.0550.0000.056
droMoj1.xenoRefGene.LENGTH0.2030.0000.203
droMoj2.genscan.LENGTH0.0370.0000.036
droMoj2.xenoRefGene.LENGTH0.2630.0010.265
droPer1.genscan.LENGTH0.0400.0020.041
droPer1.xenoRefGene.LENGTH0.2610.0040.264
droSec1.genscan.LENGTH0.0290.0000.030
droSec1.xenoRefGene.LENGTH0.2660.0000.266
droSim1.geneid.LENGTH0.0380.0000.038
droSim1.genscan.LENGTH0.0240.0000.025
droSim1.xenoRefGene.LENGTH0.2200.0030.225
droVir1.geneid.LENGTH0.1940.0040.198
droVir1.genscan.LENGTH0.0440.0000.044
droVir1.xenoRefGene.LENGTH0.2420.0000.242
droVir2.genscan.LENGTH0.0330.0040.037
droVir2.xenoRefGene.LENGTH0.2760.0000.276
droYak1.geneid.LENGTH0.0450.0000.045
droYak1.genscan.LENGTH0.0270.0040.030
droYak1.xenoRefGene.LENGTH0.2120.0000.212
droYak2.genscan.LENGTH0.0240.0040.028
droYak2.xenoRefGene.LENGTH0.2380.0030.243
equCab1.geneSymbol.LENGTH0.0050.0000.005
equCab1.geneid.LENGTH0.0830.0040.087
equCab1.nscanGene.LENGTH0.0400.0000.039
equCab1.refGene.LENGTH0.0050.0000.004
equCab1.sgpGene.LENGTH0.0620.0040.065
equCab2.ensGene.LENGTH0.0880.0080.095
equCab2.geneSymbol.LENGTH0.0070.0000.006
equCab2.nscanGene.LENGTH0.0520.0000.051
equCab2.refGene.LENGTH0.0070.0000.006
equCab2.xenoRefGene.LENGTH0.5430.0000.543
felCat3.ensGene.LENGTH0.9380.2071.147
felCat3.geneSymbol.LENGTH0.0030.0000.004
felCat3.geneid.LENGTH0.4560.0000.456
felCat3.genscan.LENGTH0.1090.0000.109
felCat3.nscanGene.LENGTH0.0830.0040.086
felCat3.refGene.LENGTH0.0040.0000.003
felCat3.sgpGene.LENGTH0.1400.0000.139
felCat3.xenoRefGene.LENGTH1.0310.0081.039
fr1.ensGene.LENGTH0.0750.0000.075
fr1.genscan.LENGTH0.060.000.06
fr2.ensGene.LENGTH0.1260.0000.127
galGal2.ensGene.LENGTH0.0560.0000.057
galGal2.geneSymbol.LENGTH0.0160.0000.016
galGal2.geneid.LENGTH0.0400.0000.039
galGal2.genscan.LENGTH0.0530.0000.053
galGal2.refGene.LENGTH0.0150.0000.016
galGal2.sgpGene.LENGTH0.0440.0000.045
galGal3.ensGene.LENGTH0.0760.0000.077
galGal3.geneSymbol.LENGTH0.0160.0000.017
galGal3.genscan.LENGTH0.050.000.05
galGal3.nscanGene.LENGTH0.0690.0040.074
galGal3.refGene.LENGTH0.0140.0000.014
galGal3.xenoRefGene.LENGTH0.4530.0040.456
gasAcu1.ensGene.LENGTH0.0890.0040.093
gasAcu1.nscanGene.LENGTH0.1010.0040.104
hg16.acembly.LENGTH0.3980.0000.398
hg16.ensGene.LENGTH0.0710.0080.078
hg16.exoniphy.LENGTH0.2590.0160.274
hg16.geneSymbol.LENGTH0.3520.0200.371
hg16.geneid.LENGTH0.0510.0000.052
hg16.genscan.LENGTH0.0650.0000.065
hg16.knownGene.LENGTH0.1220.0000.122
hg16.refGene.LENGTH0.10.00.1
hg16.sgpGene.LENGTH0.0530.0040.057
hg17.acembly.LENGTH0.6090.0080.618
hg17.acescan.LENGTH0.0100.0000.011
hg17.ccdsGene.LENGTH0.0180.0040.023
hg17.ensGene.LENGTH0.1040.0000.104
hg17.exoniphy.LENGTH0.3870.0000.387
hg17.geneSymbol.LENGTH0.0990.0000.098
hg17.geneid.LENGTH0.0870.0000.087
hg17.genscan.LENGTH0.0600.0040.064
hg17.knownGene.LENGTH0.1160.0160.131
hg17.refGene.LENGTH0.1010.0040.104
hg17.sgpGene.LENGTH0.0670.0120.079
hg17.vegaGene.LENGTH0.0460.0000.045
hg17.vegaPseudoGene.LENGTH0.0180.0000.019
hg17.xenoRefGene.LENGTH0.1860.0040.190
hg18.acembly.LENGTH0.5630.0270.591
hg18.acescan.LENGTH0.010.000.01
hg18.ccdsGene.LENGTH0.0340.0000.034
hg18.ensGene.LENGTH0.1810.0000.181
hg18.exoniphy.LENGTH0.4330.0000.433
hg18.geneSymbol.LENGTH0.1010.0000.101
hg18.geneid.LENGTH0.0770.0000.078
hg18.genscan.LENGTH0.0640.0000.065
hg18.knownGene.LENGTH0.1520.0000.152
hg18.knownGeneOld3.LENGTH0.0630.0040.066
hg18.refGene.LENGTH0.0980.0000.098
hg18.sgpGene.LENGTH0.0780.0000.078
hg18.sibGene.LENGTH0.8090.0120.821
hg18.xenoRefGene.LENGTH0.360.000.36
hg19.ccdsGene.LENGTH0.0420.0000.041
hg19.ensGene.LENGTH0.2970.0040.301
hg19.exoniphy.LENGTH0.4320.0000.432
hg19.geneSymbol.LENGTH0.1050.0000.104
hg19.knownGene.LENGTH0.1710.0000.171
hg19.nscanGene.LENGTH0.1450.0040.149
hg19.refGene.LENGTH0.0940.0030.098
hg19.xenoRefGene.LENGTH0.3470.0000.348
loxAfr3.xenoRefGene.LENGTH1.7990.1681.967
mm7.ensGene.LENGTH0.1030.0000.102
mm7.geneSymbol.LENGTH0.0880.0000.088
mm7.geneid.LENGTH0.0730.0000.074
mm7.genscan.LENGTH0.0610.0000.062
mm7.knownGene.LENGTH0.0910.0000.092
mm7.refGene.LENGTH0.0840.0000.084
mm7.sgpGene.LENGTH0.0710.0000.070
mm7.xenoRefGene.LENGTH0.320.000.32
mm8.ccdsGene.LENGTH0.0210.0000.021
mm8.ensGene.LENGTH0.0740.0000.074
mm8.geneSymbol.LENGTH0.0880.0000.088
mm8.geneid.LENGTH0.0700.0000.069
mm8.genscan.LENGTH0.0540.0030.057
mm8.knownGene.LENGTH0.0920.0000.091
mm8.nscanGene.LENGTH0.0590.0010.058
mm8.refGene.LENGTH0.0820.0000.082
mm8.sgpGene.LENGTH0.070.000.07
mm8.sibGene.LENGTH0.2400.0080.249
mm8.xenoRefGene.LENGTH0.3460.0040.350
mm9.acembly.LENGTH0.3030.0040.307
mm9.ccdsGene.LENGTH0.0290.0000.029
mm9.ensGene.LENGTH0.1470.0000.147
mm9.exoniphy.LENGTH0.4080.0080.416
mm9.geneSymbol.LENGTH0.090.000.09
mm9.geneid.LENGTH0.0830.0000.083
mm9.genscan.LENGTH0.0580.0040.062
mm9.knownGene.LENGTH0.1050.0000.105
mm9.nscanGene.LENGTH0.0610.0000.060
mm9.refGene.LENGTH0.0870.0000.086
mm9.sgpGene.LENGTH0.0770.0030.080
mm9.xenoRefGene.LENGTH0.3760.0040.380
monDom1.genscan.LENGTH0.0650.0000.065
monDom4.ensGene.LENGTH0.0690.0040.072
monDom4.geneSymbol.LENGTH0.0040.0000.004
monDom4.genscan.LENGTH0.0550.0000.054
monDom4.nscanGene.LENGTH0.0500.0030.053
monDom4.refGene.LENGTH0.0040.0010.003
monDom4.xenoRefGene.LENGTH0.4010.0240.425
monDom5.ensGene.LENGTH0.1100.0070.119
monDom5.geneSymbol.LENGTH0.0030.0000.004
monDom5.genscan.LENGTH0.0530.0040.058
monDom5.nscanGene.LENGTH0.1060.0080.114
monDom5.refGene.LENGTH0.0040.0000.003
monDom5.xenoRefGene.LENGTH0.6090.0050.613
ornAna1.ensGene.LENGTH0.0940.0020.096
ornAna1.geneSymbol.LENGTH0.0030.0010.002
ornAna1.refGene.LENGTH0.0020.0000.002
ornAna1.xenoRefGene.LENGTH0.5670.0040.572
oryLat2.ensGene.LENGTH0.0830.0000.083
oryLat2.geneSymbol.LENGTH0.0040.0000.004
oryLat2.refGene.LENGTH0.0030.0000.004
oryLat2.xenoRefGene.LENGTH0.5100.0030.515
panTro1.ensGene.LENGTH0.1030.0000.103
panTro1.geneid.LENGTH0.0480.0000.048
panTro1.genscan.LENGTH0.0610.0000.062
panTro1.xenoRefGene.LENGTH0.1120.0040.115
panTro2.ensGene.LENGTH0.1130.0000.112
panTro2.geneSymbol.LENGTH0.0980.0080.105
panTro2.genscan.LENGTH0.0610.0000.062
panTro2.nscanGene.LENGTH0.0640.0000.064
panTro2.refGene.LENGTH0.3310.0000.331
panTro2.xenoRefGene.LENGTH0.4910.0040.496
petMar1.xenoRefGene.LENGTH0.2660.0000.266
ponAbe2.ensGene.LENGTH0.0850.0000.084
ponAbe2.geneSymbol.LENGTH0.0130.0000.013
ponAbe2.genscan.LENGTH0.0620.0000.063
ponAbe2.nscanGene.LENGTH0.0570.0040.061
ponAbe2.refGene.LENGTH0.0120.0000.012
ponAbe2.xenoRefGene.LENGTH0.6170.0030.620
priPac1.xenoRefGene.LENGTH0.3520.0000.351
rheMac2.ensGene.LENGTH0.1280.0000.128
rheMac2.geneSymbol.LENGTH0.0050.0000.005
rheMac2.geneid.LENGTH0.0740.0000.073
rheMac2.nscanGene.LENGTH0.0600.0000.059
rheMac2.refGene.LENGTH0.0050.0000.005
rheMac2.sgpGene.LENGTH0.0710.0040.075
rheMac2.xenoRefGene.LENGTH0.4730.0000.473
rn3.ensGene.LENGTH0.0960.0000.096
rn3.geneSymbol.LENGTH0.0550.0000.056
rn3.geneid.LENGTH0.0530.0000.052
rn3.genscan.LENGTH0.0630.0000.063
rn3.knownGene.LENGTH0.0240.0000.024
rn3.nscanGene.LENGTH0.0600.0000.059
rn3.refGene.LENGTH0.0520.0000.051
rn3.sgpGene.LENGTH0.0560.0000.056
rn3.xenoRefGene.LENGTH0.5450.0000.546
rn4.ensGene.LENGTH0.1310.0040.135
rn4.geneSymbol.LENGTH0.0540.0000.054
rn4.geneid.LENGTH0.0840.0000.085
rn4.genscan.LENGTH0.0610.0000.061
rn4.knownGene.LENGTH0.0250.0000.024
rn4.nscanGene.LENGTH0.0540.0000.054
rn4.refGene.LENGTH0.050.000.05
rn4.sgpGene.LENGTH0.0800.0000.079
rn4.xenoRefGene.LENGTH0.3380.0000.337
sacCer1.ensGene.LENGTH0.0190.0000.018
sacCer2.ensGene.LENGTH0.0170.0000.016
strPur1.geneSymbol.LENGTH0.0000.0040.004
strPur1.genscan.LENGTH0.0640.0000.064
strPur1.refGene.LENGTH0.0040.0000.004
strPur1.xenoRefGene.LENGTH0.4920.0000.492
strPur2.geneSymbol.LENGTH0.0040.0000.004
strPur2.genscan.LENGTH0.1090.0000.108
strPur2.refGene.LENGTH0.0040.0000.004
strPur2.xenoRefGene.LENGTH0.6490.0000.649
supportedGeneIDs0.4490.0714.435
supportedGenomes0.4920.0361.659
taeGut1.ensGene.LENGTH0.0690.0120.081
taeGut1.geneSymbol.LENGTH0.0030.0000.003
taeGut1.genscan.LENGTH0.0380.0000.038
taeGut1.nscanGene.LENGTH0.0220.0080.029
taeGut1.refGene.LENGTH0.0030.0000.003
taeGut1.xenoRefGene.LENGTH0.4410.0160.457
tetNig1.ensGene.LENGTH0.0880.0040.092
tetNig1.geneid.LENGTH0.0640.0040.068
tetNig1.genscan.LENGTH0.0520.0000.052
tetNig1.nscanGene.LENGTH0.0690.0000.070
tetNig2.ensGene.LENGTH0.0670.0040.071
unfactor0.0040.0000.004
xenTro1.genscan.LENGTH0.0820.0040.085
xenTro2.ensGene.LENGTH0.0880.0000.088
xenTro2.geneSymbol.LENGTH0.0330.0000.033
xenTro2.genscan.LENGTH0.0740.0000.074
xenTro2.refGene.LENGTH0.0320.0000.032