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This page was generated on 2024-04-16 14:51:28 -0400 (Tue, 16 Apr 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.3.3 (2024-02-29) -- "Angel Food Cake" 4676
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 145/429HostnameOS / ArchINSTALLBUILDCHECK
geneLenDataBase 1.38.0  (landing page)
Matthew Young , Nadia Davidson
Snapshot Date: 2024-04-16 07:30:02 -0400 (Tue, 16 Apr 2024)
git_url: https://git.bioconductor.org/packages/geneLenDataBase
git_branch: RELEASE_3_18
git_last_commit: cbe2fbd
git_last_commit_date: 2023-10-24 08:56:17 -0400 (Tue, 24 Oct 2023)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published

CHECK results for geneLenDataBase on nebbiolo2


To the developers/maintainers of the geneLenDataBase package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: geneLenDataBase
Version: 1.38.0
Command: /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD check --install=check:geneLenDataBase.install-out.txt --library=/home/biocbuild/bbs-3.18-bioc/R/site-library --timings geneLenDataBase_1.38.0.tar.gz
StartedAt: 2024-04-16 11:33:51 -0400 (Tue, 16 Apr 2024)
EndedAt: 2024-04-16 11:42:57 -0400 (Tue, 16 Apr 2024)
EllapsedTime: 545.8 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: geneLenDataBase.Rcheck
Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD check --install=check:geneLenDataBase.install-out.txt --library=/home/biocbuild/bbs-3.18-bioc/R/site-library --timings geneLenDataBase_1.38.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.18-data-experiment/meat/geneLenDataBase.Rcheck’
* using R version 4.3.3 (2024-02-29)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
    GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.4 LTS
* using session charset: UTF-8
* checking for file ‘geneLenDataBase/DESCRIPTION’ ... OK
* this is package ‘geneLenDataBase’ version ‘1.38.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘geneLenDataBase’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 100.5Mb
  sub-directories of 1Mb or more:
    data  99.9Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
':::' call which should be '::': ‘GenomicFeatures:::supportedUCSCtables’
  See the note in ?`:::` about the use of this operator.
Unexported object imported by a ':::' call: ‘GenomicFeatures:::.UCSC_TXNAME2GENEID_MAPDEFS’
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... WARNING
Missing link or links in documentation object 'anoCar1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoCar1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoCar1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'aplCal1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'braFlo1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeJap1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caePb1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caePb2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeRem2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeRem3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cb1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cb3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.vegaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.vegaPseudoGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.nscanPasaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droEre1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droEre1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droGri1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droGri1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droPer1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droPer1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSec1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSec1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'gasAcu1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'gasAcu1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.acescan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.vegaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.vegaPseudoGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.acescan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.knownGeneOld3.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.sibGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'loxAfr3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.sibGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'petMar1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'priPac1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'sacCer1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'sacCer2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

See section 'Cross-references' in the 'Writing R Extensions' manual.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                  user system elapsed
supportedGeneIDs 2.334  0.256   5.138
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.18-data-experiment/meat/geneLenDataBase.Rcheck/00check.log’
for details.



Installation output

geneLenDataBase.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD INSTALL geneLenDataBase
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.18-bioc/R/site-library’
* installing *source* package ‘geneLenDataBase’ ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (geneLenDataBase)

Tests output


Example timings

geneLenDataBase.Rcheck/geneLenDataBase-Ex.timings

nameusersystemelapsed
anoCar1.ensGene.LENGTH0.0790.0040.083
anoCar1.genscan.LENGTH0.0470.0050.051
anoCar1.xenoRefGene.LENGTH0.8800.0050.884
anoGam1.ensGene.LENGTH0.0590.0070.067
anoGam1.geneid.LENGTH0.0480.0000.048
anoGam1.genscan.LENGTH0.0370.0080.045
apiMel1.genscan.LENGTH0.040.000.04
apiMel2.ensGene.LENGTH0.0960.0040.100
apiMel2.geneid.LENGTH0.1200.0040.124
apiMel2.genscan.LENGTH0.0330.0000.033
aplCal1.xenoRefGene.LENGTH0.4390.0190.459
bosTau2.geneSymbol.LENGTH0.0410.0000.041
bosTau2.geneid.LENGTH0.2680.0280.296
bosTau2.genscan.LENGTH0.0780.0000.079
bosTau2.refGene.LENGTH0.0390.0000.039
bosTau2.sgpGene.LENGTH0.1070.0000.107
bosTau3.ensGene.LENGTH0.1030.0000.102
bosTau3.geneSymbol.LENGTH0.0350.0000.035
bosTau3.geneid.LENGTH0.1210.0000.121
bosTau3.genscan.LENGTH0.0700.0080.077
bosTau3.refGene.LENGTH0.0340.0000.033
bosTau3.sgpGene.LENGTH0.0950.0000.095
bosTau4.ensGene.LENGTH0.1020.0010.104
bosTau4.geneSymbol.LENGTH0.0310.0020.033
bosTau4.genscan.LENGTH0.0690.0000.070
bosTau4.nscanGene.LENGTH0.0290.0000.030
bosTau4.refGene.LENGTH0.0330.0010.033
braFlo1.xenoRefGene.LENGTH0.3970.0000.397
caeJap1.xenoRefGene.LENGTH0.3560.0000.356
caePb1.xenoRefGene.LENGTH0.4630.0000.462
caePb2.xenoRefGene.LENGTH0.4550.0030.459
caeRem2.xenoRefGene.LENGTH0.4010.0010.401
caeRem3.xenoRefGene.LENGTH0.4710.0000.472
calJac1.genscan.LENGTH0.0920.0000.092
calJac1.nscanGene.LENGTH0.1140.0000.115
calJac1.xenoRefGene.LENGTH0.7700.0070.778
canFam1.ensGene.LENGTH0.2520.0080.259
canFam1.geneSymbol.LENGTH0.0060.0000.006
canFam1.genscan.LENGTH0.0640.0000.064
canFam1.nscanGene.LENGTH0.0610.0040.065
canFam1.refGene.LENGTH0.0050.0000.005
canFam1.xenoRefGene.LENGTH0.7240.0160.740
canFam2.ensGene.LENGTH0.0920.0000.092
canFam2.geneSymbol.LENGTH0.0050.0000.006
canFam2.genscan.LENGTH0.0620.0000.062
canFam2.nscanGene.LENGTH0.0680.0000.068
canFam2.refGene.LENGTH0.0010.0040.005
canFam2.xenoRefGene.LENGTH0.5530.0000.553
cavPor3.ensGene.LENGTH0.0840.0000.085
cavPor3.genscan.LENGTH0.1000.0000.101
cavPor3.nscanGene.LENGTH0.0660.0000.066
cavPor3.xenoRefGene.LENGTH0.5640.0110.575
cb1.xenoRefGene.LENGTH0.3860.0150.402
cb3.xenoRefGene.LENGTH0.3530.0040.357
ce2.geneSymbol.LENGTH0.0670.0030.071
ce2.geneid.LENGTH0.0500.0110.062
ce2.refGene.LENGTH0.0640.0040.069
ce4.geneSymbol.LENGTH0.0700.0000.071
ce4.refGene.LENGTH0.0600.0030.065
ce4.xenoRefGene.LENGTH0.0830.0010.084
ce6.ensGene.LENGTH0.2260.0110.237
ce6.geneSymbol.LENGTH0.070.000.07
ce6.refGene.LENGTH0.0660.0000.066
ce6.xenoRefGene.LENGTH0.0820.0000.082
ci1.geneSymbol.LENGTH0.0050.0000.005
ci1.refGene.LENGTH0.0050.0000.004
ci1.xenoRefGene.LENGTH0.1730.0000.172
ci2.ensGene.LENGTH0.0670.0000.067
ci2.geneSymbol.LENGTH0.0050.0000.005
ci2.refGene.LENGTH0.0040.0000.004
ci2.xenoRefGene.LENGTH0.2890.0000.288
danRer3.ensGene.LENGTH0.1000.0030.104
danRer3.geneSymbol.LENGTH0.0560.0000.056
danRer3.refGene.LENGTH0.0520.0000.051
danRer4.ensGene.LENGTH0.1220.0030.127
danRer4.geneSymbol.LENGTH0.0530.0040.057
danRer4.genscan.LENGTH0.0660.0000.066
danRer4.nscanGene.LENGTH0.0970.0000.097
danRer4.refGene.LENGTH0.0530.0000.054
danRer5.ensGene.LENGTH0.1390.0000.139
danRer5.geneSymbol.LENGTH0.0570.0000.057
danRer5.refGene.LENGTH0.0480.0000.048
danRer5.vegaGene.LENGTH0.0530.0000.052
danRer5.vegaPseudoGene.LENGTH0.0030.0000.002
danRer6.ensGene.LENGTH0.1330.0000.133
danRer6.geneSymbol.LENGTH0.0570.0000.057
danRer6.refGene.LENGTH0.2400.0070.247
danRer6.xenoRefGene.LENGTH0.5740.0000.574
dm1.geneSymbol.LENGTH0.0660.0000.067
dm1.genscan.LENGTH0.0260.0000.026
dm1.refGene.LENGTH0.0630.0000.063
dm2.geneSymbol.LENGTH0.0660.0010.067
dm2.geneid.LENGTH0.0340.0020.036
dm2.genscan.LENGTH0.0250.0000.025
dm2.nscanGene.LENGTH0.0510.0000.052
dm2.refGene.LENGTH0.0620.0000.062
dm3.geneSymbol.LENGTH0.0730.0020.074
dm3.nscanPasaGene.LENGTH0.0500.0030.052
dm3.refGene.LENGTH0.0680.0000.069
dp2.genscan.LENGTH0.0330.0000.033
dp2.xenoRefGene.LENGTH0.1980.0030.202
dp3.geneid.LENGTH0.0390.0000.040
dp3.genscan.LENGTH0.0260.0000.027
dp3.xenoRefGene.LENGTH0.1110.0000.112
droAna1.geneid.LENGTH0.0670.0010.067
droAna1.genscan.LENGTH0.0220.0000.022
droAna1.xenoRefGene.LENGTH0.2070.0000.207
droAna2.genscan.LENGTH0.0510.0000.050
droAna2.xenoRefGene.LENGTH0.2720.0000.271
droEre1.genscan.LENGTH0.0310.0000.031
droEre1.xenoRefGene.LENGTH0.2670.0000.268
droGri1.genscan.LENGTH0.0410.0000.041
droGri1.xenoRefGene.LENGTH0.2840.0150.299
droMoj1.geneid.LENGTH0.2430.0110.255
droMoj1.genscan.LENGTH0.0570.0000.057
droMoj1.xenoRefGene.LENGTH0.2150.0010.215
droMoj2.genscan.LENGTH0.0370.0000.037
droMoj2.xenoRefGene.LENGTH0.2570.0000.257
droPer1.genscan.LENGTH0.0360.0040.040
droPer1.xenoRefGene.LENGTH0.2590.0000.259
droSec1.genscan.LENGTH0.0300.0000.031
droSec1.xenoRefGene.LENGTH0.2590.0000.259
droSim1.geneid.LENGTH0.0400.0000.039
droSim1.genscan.LENGTH0.0260.0000.025
droSim1.xenoRefGene.LENGTH0.2160.0090.224
droVir1.geneid.LENGTH0.1070.0020.109
droVir1.genscan.LENGTH0.0440.0000.043
droVir1.xenoRefGene.LENGTH0.2290.0000.229
droVir2.genscan.LENGTH0.0330.0040.037
droVir2.xenoRefGene.LENGTH1.1430.1151.259
droYak1.geneid.LENGTH0.0420.0000.042
droYak1.genscan.LENGTH0.0290.0010.029
droYak1.xenoRefGene.LENGTH0.2060.0000.205
droYak2.genscan.LENGTH0.0260.0000.026
droYak2.xenoRefGene.LENGTH0.2460.0040.250
equCab1.geneSymbol.LENGTH0.0050.0000.005
equCab1.geneid.LENGTH0.0810.0000.082
equCab1.nscanGene.LENGTH0.0390.0000.039
equCab1.refGene.LENGTH0.0050.0000.004
equCab1.sgpGene.LENGTH0.0640.0030.067
equCab2.ensGene.LENGTH0.0920.0000.092
equCab2.geneSymbol.LENGTH0.0060.0000.007
equCab2.nscanGene.LENGTH0.0440.0040.048
equCab2.refGene.LENGTH0.0070.0000.006
equCab2.xenoRefGene.LENGTH0.5390.0030.543
felCat3.ensGene.LENGTH0.1090.0010.109
felCat3.geneSymbol.LENGTH0.0040.0000.004
felCat3.geneid.LENGTH0.5050.0070.512
felCat3.genscan.LENGTH0.1180.0000.118
felCat3.nscanGene.LENGTH0.0900.0030.095
felCat3.refGene.LENGTH0.0030.0000.004
felCat3.sgpGene.LENGTH0.1440.0000.144
felCat3.xenoRefGene.LENGTH1.1250.0121.136
fr1.ensGene.LENGTH0.0770.0000.077
fr1.genscan.LENGTH0.0610.0000.060
fr2.ensGene.LENGTH0.1340.0040.137
galGal2.ensGene.LENGTH0.0560.0040.061
galGal2.geneSymbol.LENGTH0.0170.0000.017
galGal2.geneid.LENGTH0.0410.0010.040
galGal2.genscan.LENGTH0.0550.0000.054
galGal2.refGene.LENGTH0.0160.0000.016
galGal2.sgpGene.LENGTH0.0450.0040.048
galGal3.ensGene.LENGTH0.0780.0000.078
galGal3.geneSymbol.LENGTH0.0170.0000.017
galGal3.genscan.LENGTH0.0460.0030.050
galGal3.nscanGene.LENGTH0.0760.0000.075
galGal3.refGene.LENGTH0.0110.0040.014
galGal3.xenoRefGene.LENGTH0.7150.0040.718
gasAcu1.ensGene.LENGTH0.0970.0080.105
gasAcu1.nscanGene.LENGTH0.1010.0000.102
hg16.acembly.LENGTH0.3700.0040.374
hg16.ensGene.LENGTH0.0680.0060.073
hg16.exoniphy.LENGTH0.2490.0020.252
hg16.geneSymbol.LENGTH0.1040.0000.105
hg16.geneid.LENGTH0.0520.0000.052
hg16.genscan.LENGTH0.0670.0000.068
hg16.knownGene.LENGTH0.3460.0130.358
hg16.refGene.LENGTH0.0910.0070.098
hg16.sgpGene.LENGTH0.0550.0040.059
hg17.acembly.LENGTH0.5740.0080.583
hg17.acescan.LENGTH0.0100.0000.011
hg17.ccdsGene.LENGTH0.0230.0000.024
hg17.ensGene.LENGTH0.1120.0010.112
hg17.exoniphy.LENGTH0.4440.0110.456
hg17.geneSymbol.LENGTH0.1090.0000.109
hg17.geneid.LENGTH0.0750.0040.078
hg17.genscan.LENGTH0.0630.0010.062
hg17.knownGene.LENGTH0.1050.0030.108
hg17.refGene.LENGTH0.10.00.1
hg17.sgpGene.LENGTH0.0710.0000.071
hg17.vegaGene.LENGTH0.0440.0000.044
hg17.vegaPseudoGene.LENGTH0.0180.0010.018
hg17.xenoRefGene.LENGTH0.6450.0150.660
hg18.acembly.LENGTH0.4360.0040.440
hg18.acescan.LENGTH0.010.000.01
hg18.ccdsGene.LENGTH0.0330.0000.034
hg18.ensGene.LENGTH0.190.000.19
hg18.exoniphy.LENGTH0.4740.0000.474
hg18.geneSymbol.LENGTH0.1110.0000.111
hg18.geneid.LENGTH0.0790.0000.080
hg18.genscan.LENGTH0.0610.0000.062
hg18.knownGene.LENGTH0.1480.0000.148
hg18.knownGeneOld3.LENGTH0.0660.0000.067
hg18.refGene.LENGTH0.0970.0000.097
hg18.sgpGene.LENGTH0.0820.0000.081
hg18.sibGene.LENGTH1.4260.1111.538
hg18.xenoRefGene.LENGTH0.3260.0000.327
hg19.ccdsGene.LENGTH0.0380.0000.039
hg19.ensGene.LENGTH0.2840.0030.288
hg19.exoniphy.LENGTH0.4090.0040.412
hg19.geneSymbol.LENGTH0.0960.0040.099
hg19.knownGene.LENGTH0.1690.0040.173
hg19.nscanGene.LENGTH0.1430.0010.143
hg19.refGene.LENGTH0.0910.0030.095
hg19.xenoRefGene.LENGTH0.3410.0000.341
loxAfr3.xenoRefGene.LENGTH0.7410.0000.740
mm7.ensGene.LENGTH0.1040.0040.108
mm7.geneSymbol.LENGTH0.0870.0000.088
mm7.geneid.LENGTH0.0800.0000.081
mm7.genscan.LENGTH0.0620.0000.063
mm7.knownGene.LENGTH0.0920.0040.096
mm7.refGene.LENGTH0.0930.0000.092
mm7.sgpGene.LENGTH0.0690.0040.073
mm7.xenoRefGene.LENGTH0.2930.0000.293
mm8.ccdsGene.LENGTH0.0220.0000.022
mm8.ensGene.LENGTH0.0790.0000.078
mm8.geneSymbol.LENGTH0.0940.0080.101
mm8.geneid.LENGTH0.0730.0000.073
mm8.genscan.LENGTH0.0590.0000.059
mm8.knownGene.LENGTH0.0910.0000.090
mm8.nscanGene.LENGTH0.0590.0040.064
mm8.refGene.LENGTH0.0830.0000.084
mm8.sgpGene.LENGTH0.0710.0010.071
mm8.sibGene.LENGTH0.2420.0110.253
mm8.xenoRefGene.LENGTH0.3530.0000.353
mm9.acembly.LENGTH0.3210.0080.329
mm9.ccdsGene.LENGTH0.030.000.03
mm9.ensGene.LENGTH0.1460.0030.151
mm9.exoniphy.LENGTH0.4400.0040.444
mm9.geneSymbol.LENGTH0.0940.0000.094
mm9.geneid.LENGTH0.0840.0000.084
mm9.genscan.LENGTH0.0650.0000.065
mm9.knownGene.LENGTH0.1130.0000.114
mm9.nscanGene.LENGTH0.0660.0000.066
mm9.refGene.LENGTH0.0870.0000.087
mm9.sgpGene.LENGTH0.0820.0000.082
mm9.xenoRefGene.LENGTH0.3590.0110.372
monDom1.genscan.LENGTH0.0620.0120.075
monDom4.ensGene.LENGTH0.0790.0000.080
monDom4.geneSymbol.LENGTH0.0030.0000.004
monDom4.genscan.LENGTH0.0550.0000.056
monDom4.nscanGene.LENGTH0.0580.0000.059
monDom4.refGene.LENGTH0.0030.0000.004
monDom4.xenoRefGene.LENGTH0.6610.0030.665
monDom5.ensGene.LENGTH0.1160.0000.116
monDom5.geneSymbol.LENGTH0.0030.0000.003
monDom5.genscan.LENGTH0.0550.0000.055
monDom5.nscanGene.LENGTH0.1120.0010.112
monDom5.refGene.LENGTH0.0030.0000.003
monDom5.xenoRefGene.LENGTH0.5960.0000.596
ornAna1.ensGene.LENGTH0.0940.0000.094
ornAna1.geneSymbol.LENGTH0.0020.0000.003
ornAna1.refGene.LENGTH0.0020.0000.002
ornAna1.xenoRefGene.LENGTH0.5290.0000.528
oryLat2.ensGene.LENGTH0.0790.0040.082
oryLat2.geneSymbol.LENGTH0.0040.0000.004
oryLat2.refGene.LENGTH0.0030.0000.004
oryLat2.xenoRefGene.LENGTH0.5020.0000.503
panTro1.ensGene.LENGTH0.110.000.11
panTro1.geneid.LENGTH0.0490.0040.052
panTro1.genscan.LENGTH0.0640.0000.064
panTro1.xenoRefGene.LENGTH0.1080.0030.112
panTro2.ensGene.LENGTH0.1060.0080.113
panTro2.geneSymbol.LENGTH0.0980.0050.101
panTro2.genscan.LENGTH0.0620.0030.065
panTro2.nscanGene.LENGTH0.0640.0010.063
panTro2.refGene.LENGTH0.1000.0000.099
panTro2.xenoRefGene.LENGTH0.4910.0030.494
petMar1.xenoRefGene.LENGTH0.2820.0010.281
ponAbe2.ensGene.LENGTH0.0900.0000.089
ponAbe2.geneSymbol.LENGTH0.0130.0000.013
ponAbe2.genscan.LENGTH0.0640.0000.065
ponAbe2.nscanGene.LENGTH0.0640.0000.064
ponAbe2.refGene.LENGTH0.0120.0000.012
ponAbe2.xenoRefGene.LENGTH0.6320.0000.632
priPac1.xenoRefGene.LENGTH0.3450.0000.344
rheMac2.ensGene.LENGTH0.1200.0110.132
rheMac2.geneSymbol.LENGTH0.0050.0000.005
rheMac2.geneid.LENGTH0.0640.0110.076
rheMac2.nscanGene.LENGTH0.0620.0000.063
rheMac2.refGene.LENGTH0.0050.0000.005
rheMac2.sgpGene.LENGTH0.0730.0000.072
rheMac2.xenoRefGene.LENGTH0.4840.0080.491
rn3.ensGene.LENGTH0.1070.0000.107
rn3.geneSymbol.LENGTH0.0540.0040.058
rn3.geneid.LENGTH0.0540.0000.054
rn3.genscan.LENGTH0.2790.0040.284
rn3.knownGene.LENGTH0.0250.0000.026
rn3.nscanGene.LENGTH0.0630.0000.063
rn3.refGene.LENGTH0.0520.0000.052
rn3.sgpGene.LENGTH0.0590.0000.059
rn3.xenoRefGene.LENGTH0.5390.0000.539
rn4.ensGene.LENGTH0.1350.0030.139
rn4.geneSymbol.LENGTH0.0520.0000.053
rn4.geneid.LENGTH0.0870.0000.087
rn4.genscan.LENGTH0.060.000.06
rn4.knownGene.LENGTH0.0250.0000.026
rn4.nscanGene.LENGTH0.0570.0000.057
rn4.refGene.LENGTH0.0500.0000.049
rn4.sgpGene.LENGTH0.0830.0000.082
rn4.xenoRefGene.LENGTH0.3120.0030.315
sacCer1.ensGene.LENGTH0.0150.0040.019
sacCer2.ensGene.LENGTH0.0160.0000.017
strPur1.geneSymbol.LENGTH0.0000.0030.005
strPur1.genscan.LENGTH0.0630.0000.063
strPur1.refGene.LENGTH0.0050.0000.004
strPur1.xenoRefGene.LENGTH0.4820.0000.481
strPur2.geneSymbol.LENGTH0.0040.0000.004
strPur2.genscan.LENGTH0.1100.0010.109
strPur2.refGene.LENGTH0.0040.0000.003
strPur2.xenoRefGene.LENGTH0.6160.0000.616
supportedGeneIDs2.3340.2565.138
supportedGenomes0.2810.0161.126
taeGut1.ensGene.LENGTH0.0610.0040.066
taeGut1.geneSymbol.LENGTH0.0020.0000.002
taeGut1.genscan.LENGTH0.0310.0000.032
taeGut1.nscanGene.LENGTH0.0250.0000.025
taeGut1.refGene.LENGTH0.0030.0000.002
taeGut1.xenoRefGene.LENGTH0.4130.0120.425
tetNig1.ensGene.LENGTH0.0870.0000.087
tetNig1.geneid.LENGTH0.0600.0040.064
tetNig1.genscan.LENGTH0.0520.0080.060
tetNig1.nscanGene.LENGTH0.0680.0040.072
tetNig2.ensGene.LENGTH0.070.000.07
unfactor0.0050.0000.004
xenTro1.genscan.LENGTH0.0810.0000.081
xenTro2.ensGene.LENGTH0.0830.0000.083
xenTro2.geneSymbol.LENGTH0.030.000.03
xenTro2.genscan.LENGTH0.070.000.07
xenTro2.refGene.LENGTH0.0290.0010.031